6-3255425-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255425
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255425
    reference: chr 6
allele count: 1
allele frequency: 5.942476824340385e-5
allele num: 16828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.215G>A
  hgvsp: ENSP00000369661.4:p.Ser72Asn
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10938G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3822
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser72Asn
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 206
  num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

6-3255434-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255434
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255434
    reference: chr 6
allele count: 1
allele frequency: 5.969436485195797e-5
allele num: 16752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.224T>G
  hgvsp: ENSP00000369661.4:p.Phe75Cys
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10947T>G
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Phe75Cys
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 492
  num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-3255436-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255436
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255436
    reference: chr 6
allele count: 2
allele frequency: 1.198897014746433e-4
allele num: 16682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10949G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.226G>C
  hgvsp: ENSP00000369661.4:p.Gly76Arg
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly76Arg
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 206
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-3255438-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255438
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255438
    reference: chr 6
allele count: 1
allele frequency: 5.995203836930456e-5
allele num: 16680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10951T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.228T>G
  hgvsp: ENST00000380306.4:c.228T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly76Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 938
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

6-3255439-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255439
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255439
    reference: chr 6
allele count: 15
allele frequency: 9.00792697573865e-4
allele num: 16652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.229G>A
  hgvsp: ENSP00000369661.4:p.Gly77Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10952G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly77Ser
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 488
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-3255440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255440
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255440
    reference: chr 6
allele count: 8
allele frequency: 4.814636494944632e-4
allele num: 16616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.230G>A
  hgvsp: ENSP00000369661.4:p.Gly77Asp
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10953G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2993
  bin: 9.75e1
  variant carriers: 8
hgvs: p.Gly77Asp
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 928
  num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

6-3255441-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255441
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255441
    reference: chr 6
allele count: 193
allele frequency: 1.161531054405392e-2
allele num: 16616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10954C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.231C>T
  hgvsp: ENST00000380306.4:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 9.75e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly77Gly
num of homozygotes: 1
population: European (Non-Finnish)
  type: Population
  allele count: 87
  allele frequency: 1.608133086876155e-2
  allele num: 5410
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

6-3255442-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255442
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255442
    reference: chr 6
allele count: 7
allele frequency: 4.215343851619896e-4
allele num: 16606
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10955A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.232A>G
  hgvsp: ENSP00000369661.4:p.Ser78Gly
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 46
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Ser78Gly
num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 4.854368932038835e-3
  allele num: 206
  num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-3255447-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255447
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255447
    reference: chr 6
allele count: 2
allele frequency: 1.206854936036688e-4
allele num: 16572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.237G>A
  hgvsp: ENST00000380306.4:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10960G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg79Arg
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 2
  allele frequency: 4.098360655737705e-3
  allele num: 488
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-3255458-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255458
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255458
    reference: chr 6
allele count: 1
allele frequency: 6.068697657482704e-5
allele num: 16478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10971A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.248A>G
  hgvsp: ENSP00000369661.4:p.Asn83Ser
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3782
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn83Ser
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 1628
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

6-3255460-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255460
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255460
    reference: chr 6
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.250T>G
  hgvsp: ENSP00000369661.4:p.Ser84Ala
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10973T>G
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 179
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser84Ala
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5326
  num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-3255461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255461
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255461
    reference: chr 6
allele count: 3
allele frequency: 1.823043266893534e-4
allele num: 16456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10974C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.251C>T
  hgvsp: ENSP00000369661.4:p.Ser84Phe
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 839
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser84Phe
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ

6-3255464-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255464
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255464
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 16434
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10977G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+1G>C
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: splice donor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 0
hgvs: c.253+1G>C
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

6-3255468-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255468
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255468
    reference: chr 6
allele count: 11
allele frequency: 6.714686851422292e-4
allele num: 16382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10981G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+5G>C
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 159
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
hgvs: c.253+5G>C
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 488
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

6-3255470-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255470
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255470
    reference: chr 6
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10983C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+7C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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hgvs: c.253+7C>T
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 908
  num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

6-3255474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255474
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255474
    reference: chr 6
allele count: 33
allele frequency: 2.022802500919456e-3
allele num: 16314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10987C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+11C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 21
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 206
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

6-3255480-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255480
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255480
    reference: chr 6
allele count: 1
allele frequency: 6.141751627564181e-5
allele num: 16282
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+17G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10993G>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5246
  num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS

6-3255486-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255486
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255486
    reference: chr 6
allele count: 1
allele frequency: 6.156119182467373e-5
allele num: 16244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+10999T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+23T>C
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 486
  num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

6-3255497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255497
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255497
    reference: chr 6
allele count: 1
allele frequency: 6.195019204559534e-5
allele num: 16142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+34C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11010C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 201
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genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 147
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genotype quality: GenotypeQuality
  all individuals: 78
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genotype quality: GenotypeQuality
  all individuals: 15
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 204
  num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

6-3255498-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255498
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255498
    reference: chr 6
allele count: 4
allele frequency: 2.477393781741608e-4
allele num: 16146
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+35A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11011A>G
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
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genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 1773
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 719
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 559
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 288
  num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-3255501-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255501
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255500
    reference: chr 6
allele count: 1
allele frequency: 6.225874735400324e-5
allele num: 16062
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+39delC
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11015delC
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 706
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 265
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genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 910
  num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: GC
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

6-3255502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255502
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255502
    reference: chr 6
allele count: 20
allele frequency: 1.249687578105474e-3
allele num: 16004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11015C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+39C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 288
  num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

6-3255502-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255502
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255500
    reference: chr 6
allele count: 1
allele frequency: 6.248437890527369e-5
allele num: 16004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+41_253+42delGT
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11017_*127+11018delGT
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 311
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genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 488
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: CTG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

6-3255510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255510
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255510
    reference: chr 6
allele count: 1
allele frequency: 6.371049949031601e-5
allele num: 15696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+47C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11023C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 766
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 254
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genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 49
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  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 488
  num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ

6-3255511-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255511
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255511
    reference: chr 6
allele count: 1
allele frequency: 6.332320162107397e-5
allele num: 15792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+48G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11024G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
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genotype depth: GenotypeDepth
  all individuals: 630
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
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genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 49
  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 159
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genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 169
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 486
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2817
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 372
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genotype quality: GenotypeQuality
  all individuals: 2082
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 78
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genotype quality: GenotypeQuality
  all individuals: 525
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  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.396258028483664e-4
  allele num: 7162
  num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-3255513-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3255513
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3255513
    reference: chr 6
allele count: 1
allele frequency: 6.360513929525506e-5
allele num: 15722
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+50G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*127+11026G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1825
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
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genotype depth: GenotypeDepth
  all individuals: 140
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genotype depth: GenotypeDepth
  all individuals: 75
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1135
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2769
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 486
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-3259210-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259210
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259210
    reference: chr 6
allele count: 2
allele frequency: 2.5e-3
allele num: 800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10540G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.-47G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.-47G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.-47G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.-47G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3747G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

6-3259228-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259228
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259228
    reference: chr 6
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.-29G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.-29G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10522G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.-29G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.-29G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3765G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.-29G>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.-29G>C
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

6-3259238-CCGGGAGCCGTGGGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259238
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259224
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 1018
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: CCGGGAGCCGTGGGG
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

6-3259239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259239
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259239
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 1050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3776C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10511C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.-18C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.-18C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.-18C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-3259252-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259252
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259252
    reference: chr 6
allele count: 1
allele frequency: 7.183908045977011e-4
allele num: 1392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.-5G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3789G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.-5G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.-5G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10498G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6752
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

6-3259280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259280
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259280
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 2174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.24C>T
  hgvsp: ENST00000473000.2:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.24C>T
  hgvsp: ENST00000438998.2:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.24C>T
  hgvsp: ENST00000451246.2:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.24C>T
  hgvsp: ENST00000419065.2:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.24C>T
  hgvsp: ENST00000324987.4:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10470C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.24C>T
  hgvsp: ENST00000380305.4:c.24C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3817C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5742
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala8Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

6-3259294-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259294
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259294
    reference: chr 6
allele count: 1
allele frequency: 3.261578604044357e-4
allele num: 3066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3831C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.38C>T
  hgvsp: ENSP00000407702.2:p.Ser13Phe
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.38C>T
  hgvsp: ENSP00000418241.2:p.Ser13Phe
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.1C>T
  hgvsp: ENST00000454610.2:c.1C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10456C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.38C>T
  hgvsp: ENSP00000369660.4:p.Ser13Phe
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.38C>T
  hgvsp: ENSP00000413353.2:p.Ser13Phe
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.38C>T
  hgvsp: ENSP00000424330.1:p.Ser13Phe
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.38C>T
  hgvsp: ENSP00000392353.2:p.Ser13Phe
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser13Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-3259296-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259296
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259296
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 3150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.40C>A
  hgvsp: ENSP00000407702.2:p.Leu14Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.40C>A
  hgvsp: ENSP00000413353.2:p.Leu14Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.40C>A
  hgvsp: ENSP00000424330.1:p.Leu14Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.3C>A
  hgvsp: ENSP00000415768.2:p.Leu2Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.40C>A
  hgvsp: ENSP00000369660.4:p.Leu14Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.40C>A
  hgvsp: ENSP00000418241.2:p.Leu14Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.40C>A
  hgvsp: ENSP00000392353.2:p.Leu14Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10454C>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3833C>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu14Met
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

6-3259296-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259296
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259296
    reference: chr 6
allele count: 23
allele frequency: 7.301587301587302e-3
allele num: 3150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.40C>G
  hgvsp: ENSP00000413353.2:p.Leu14Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.40C>G
  hgvsp: ENSP00000407702.2:p.Leu14Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.3C>G
  hgvsp: ENSP00000415768.2:p.Leu2Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10454C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.40C>G
  hgvsp: ENSP00000392353.2:p.Leu14Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.40C>G
  hgvsp: ENSP00000424330.1:p.Leu14Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.40C>G
  hgvsp: ENSP00000418241.2:p.Leu14Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.40C>G
  hgvsp: ENSP00000369660.4:p.Leu14Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3833C>G
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5399
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 6.25e1
  variant carriers: 3
hgvs: p.Leu14Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

6-3259304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259304
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259304
    reference: chr 6
allele count: 1
allele frequency: 3.004807692307692e-4
allele num: 3328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.48C>T
  hgvsp: ENST00000451246.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.48C>T
  hgvsp: ENST00000473000.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.48C>T
  hgvsp: ENST00000438998.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10446C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.48C>T
  hgvsp: ENST00000380305.4:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.11C>T
  hgvsp: ENST00000454610.2:c.11C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.48C>T
  hgvsp: ENST00000324987.4:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3841C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.48C>T
  hgvsp: ENST00000419065.2:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn16Asn
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

6-3259307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259307
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259307
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 3378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.51C>T
  hgvsp: ENST00000438998.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.51C>T
  hgvsp: ENST00000324987.4:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10443C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.51C>T
  hgvsp: ENST00000419065.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.14C>T
  hgvsp: ENST00000454610.2:c.14C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.51C>T
  hgvsp: ENST00000473000.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.51C>T
  hgvsp: ENST00000380305.4:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.51C>T
  hgvsp: ENST00000451246.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3844C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe17Phe
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

6-3259312-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259312
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259312
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 3518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.56C>T
  hgvsp: ENSP00000407702.2:p.Ala19Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.19C>T
  hgvsp: ENSP00000415768.2:p.Ala7Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3849C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.56C>T
  hgvsp: ENSP00000424330.1:p.Ala19Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10438C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.56C>T
  hgvsp: ENSP00000392353.2:p.Ala19Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.56C>T
  hgvsp: ENSP00000418241.2:p.Ala19Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.56C>T
  hgvsp: ENSP00000413353.2:p.Ala19Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.56C>T
  hgvsp: ENSP00000369660.4:p.Ala19Val
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala19Val
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

6-3259324-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259324
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259324
    reference: chr 6
allele count: 1
allele frequency: 2.628811777076761e-4
allele num: 3804
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.68A>G
  hgvsp: ENSP00000392353.2:p.Glu23Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.68A>G
  hgvsp: ENSP00000418241.2:p.Glu23Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.68A>G
  hgvsp: ENSP00000413353.2:p.Glu23Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.68A>G
  hgvsp: ENSP00000407702.2:p.Glu23Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.31A>G
  hgvsp: ENSP00000415768.2:p.Glu11Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.68A>G
  hgvsp: ENSP00000424330.1:p.Glu23Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.68A>G
  hgvsp: ENSP00000369660.4:p.Glu23Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3861A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10426A>G
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Glu23Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-3259344-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259344
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259344
    reference: chr 6
allele count: 3
allele frequency: 7.142857142857143e-4
allele num: 4200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.51G>A
  hgvsp: ENSP00000415768.2:p.Val18Ile
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3881G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.88G>A
  hgvsp: ENSP00000418241.2:p.Val30Ile
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.88G>A
  hgvsp: ENSP00000424330.1:p.Val30Ile
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.88G>A
  hgvsp: ENSP00000392353.2:p.Val30Ile
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.88G>A
  hgvsp: ENSP00000407702.2:p.Val30Ile
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.88G>A
  hgvsp: ENSP00000369660.4:p.Val30Ile
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.88G>A
  hgvsp: ENSP00000413353.2:p.Val30Ile
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10406G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4074
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Val30Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-3259347-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259347
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259347
    reference: chr 6
allele count: 1
allele frequency: 2.361832782239018e-4
allele num: 4234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.91A>C
  hgvsp: ENSP00000413353.2:p.Met31Leu
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.91A>C
  hgvsp: ENSP00000424330.1:p.Met31Leu
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.91A>C
  hgvsp: ENSP00000369660.4:p.Met31Leu
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3884A>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.91A>C
  hgvsp: ENSP00000418241.2:p.Met31Leu
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.54A>C
  hgvsp: ENSP00000415768.2:p.Met19Leu
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.91A>C
  hgvsp: ENSP00000407702.2:p.Met31Leu
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.91A>C
  hgvsp: ENSP00000392353.2:p.Met31Leu
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10403A>C
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met31Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-3259350-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259350
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259351
    reference: chr 6
allele count: 1
allele frequency: 2.39463601532567e-4
allele num: 4176
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.94_95insA
  hgvsp: ENSP00000392353.2:p.Arg32GlnfsTer63
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.94_95insA
  hgvsp: ENSP00000369660.4:p.Arg32GlnfsTer68
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.94_95insA
  hgvsp: ENSP00000424330.1:p.Arg32GlnfsTer61
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.94_95insA
  hgvsp: ENSP00000418241.2:p.Arg32GlnfsTer137
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3887_253+3888insA
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.57_58insA
  hgvsp: ENSP00000415768.2:p.Arg20GlnfsTer106
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.94_95insA
  hgvsp: ENSP00000407702.2:p.Arg32GlnfsTer31
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10400_*128-10399insA
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.94_95insA
  hgvsp: ENSP00000413353.2:p.Arg32GlnfsTer65
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg32GlnfsTer63
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

6-3259357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259357
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259357
    reference: chr 6
allele count: 4
allele frequency: 8.908685968819599e-4
allele num: 4490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10393C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.101C>T
  hgvsp: ENSP00000392353.2:p.Thr34Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3894C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.101C>T
  hgvsp: ENSP00000369660.4:p.Thr34Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.101C>T
  hgvsp: ENSP00000418241.2:p.Thr34Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.101C>T
  hgvsp: ENSP00000413353.2:p.Thr34Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.64C>T
  hgvsp: ENSP00000415768.2:p.Thr22Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.101C>T
  hgvsp: ENSP00000407702.2:p.Thr34Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.101C>T
  hgvsp: ENSP00000424330.1:p.Thr34Met
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr34Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

6-3259365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259365
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259365
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 4814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.109C>T
  hgvsp: ENST00000451246.2:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10385C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.109C>T
  hgvsp: ENST00000473000.2:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.109C>T
  hgvsp: ENST00000419065.2:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3902C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.109C>T
  hgvsp: ENST00000380305.4:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.109C>T
  hgvsp: ENST00000324987.4:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.109C>T
  hgvsp: ENST00000438998.2:c.109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.72C>T
  hgvsp: ENST00000454610.2:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu37Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-3259370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259370
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259370
    reference: chr 6
allele count: 40
allele frequency: 7.836990595611285e-3
allele num: 5104
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.114C>T
  hgvsp: ENST00000473000.2:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.114C>T
  hgvsp: ENST00000380305.4:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.77C>T
  hgvsp: ENST00000454610.2:c.77C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.114C>T
  hgvsp: ENST00000451246.2:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10380C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.114C>T
  hgvsp: ENST00000324987.4:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.114C>T
  hgvsp: ENST00000438998.2:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3907C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.114C>T
  hgvsp: ENST00000419065.2:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 1.25e1
  variant carriers: 2
hgvs: p.Phe38Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-3259400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259400
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259400
    reference: chr 6
allele count: 1
allele frequency: 1.701258931609391e-4
allele num: 5878
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.144C>T
  hgvsp: ENST00000419065.2:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.144C>T
  hgvsp: ENST00000451246.2:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.144C>T
  hgvsp: ENST00000438998.2:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.144C>T
  hgvsp: ENST00000473000.2:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10350C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.107C>T
  hgvsp: ENST00000454610.2:c.107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.144C>T
  hgvsp: ENST00000380305.4:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3937C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.144C>T
  hgvsp: ENST00000324987.4:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg48Arg
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/6-3259415-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259415
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259415
    reference: chr 6
allele count: 16
allele frequency: 2.998500749625187e-3
allele num: 5336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.159C>A
  hgvsp: ENST00000473000.2:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.159C>A
  hgvsp: ENST00000419065.2:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.159C>A
  hgvsp: ENST00000451246.2:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.159C>A
  hgvsp: ENST00000324987.4:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3952C>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10335C>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.159C>A
  hgvsp: ENST00000438998.2:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.159C>A
  hgvsp: ENST00000380305.4:c.159C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.122C>A
  hgvsp: ENST00000454610.2:c.122C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala53Ala
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

6-3259416-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259416
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259416
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 5338
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.160A>G
  hgvsp: ENSP00000392353.2:p.Met54Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.160A>G
  hgvsp: ENSP00000413353.2:p.Met54Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.160A>G
  hgvsp: ENSP00000424330.1:p.Met54Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.160A>G
  hgvsp: ENSP00000418241.2:p.Met54Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.160A>G
  hgvsp: ENSP00000407702.2:p.Met54Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3953A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.160A>G
  hgvsp: ENSP00000369660.4:p.Met54Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.123A>G
  hgvsp: ENSP00000415768.2:p.Met42Val
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10334A>G
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3674
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met54Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

6-3259425-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259425
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259425
    reference: chr 6
allele count: 1
allele frequency: 1.767408978437611e-4
allele num: 5658
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.169C>G
  hgvsp: ENSP00000392353.2:p.Arg57Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.169C>G
  hgvsp: ENSP00000407702.2:p.Arg57Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.169C>G
  hgvsp: ENSP00000369660.4:p.Arg57Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10325C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.132C>G
  hgvsp: ENSP00000415768.2:p.Arg45Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.169C>G
  hgvsp: ENSP00000418241.2:p.Arg57Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3962C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.169C>G
  hgvsp: ENSP00000413353.2:p.Arg57Gly
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.169C>G
  hgvsp: ENSP00000424330.1:p.Arg57Gly
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg57Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-3259444-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259444
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259444
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 3712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.174+14G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+14G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+14G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.174+14G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.174+14G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.174+14G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+3981G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10306G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.174+14G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

6-3259463-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259463
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259463
    reference: chr 6
allele count: 1177
allele frequency: 7.347066167290887e-1
allele num: 1602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+4000G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.174+33G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.174+33G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.174+33G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+33G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.174+33G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.174+33G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10287G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+33G>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 2.5e0
  variant carriers: 1176
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 7.5e0
  variant carriers: 1956
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 199
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 615
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.25e1
  variant carriers: 503
num of homozygotes: 414
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-3259465-GGCGGGGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259465
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259457
    reference: chr 6
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: GGCGGGGGC
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-3259473-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3259473
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3259473
    reference: chr 6
allele count: 1
allele frequency: 3.311258278145695e-3
allele num: 302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.174+43C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-10277C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.174+43C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+43C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.174+43C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.253+4010C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.174+43C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.174+43C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+43C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

6-3263870-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263870
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263870
    reference: chr 6
allele count: 39
allele frequency: 3.222607833415964e-3
allele num: 12102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4440C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5880C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-48C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-48C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-48C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-48C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3955C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3955C>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4440C>G
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-3263874-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263874
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263874
    reference: chr 6
allele count: 2
allele frequency: 1.570845114671693e-4
allele num: 12732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-44C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3951C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-44C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-44C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4444C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3951C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-44C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5876C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4444C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-3263875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263875
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263875
    reference: chr 6
allele count: 1
allele frequency: 7.79058896852602e-5
allele num: 12836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-43G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4445G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-43G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4445G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-43G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5875G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3950G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3950G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-43G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1813
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

6-3263877-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263877
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263877
    reference: chr 6
allele count: 1
allele frequency: 7.666360012266176e-5
allele num: 13044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-41G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-41G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5873G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3948G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-41G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4447G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3948G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-41G>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4447G>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3463
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

6-3263881-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263881
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263881
    reference: chr 6
allele count: 90
allele frequency: 8.622341444721212e-3
allele num: 10438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3944T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-37T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-37T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-37T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3944T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-37T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4451T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5869T>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4451T>G
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3535
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-3263888-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263888
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263888
    reference: chr 6
allele count: 1
allele frequency: 7.117437722419929e-5
allele num: 14050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3937G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-30G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-30G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-30G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-30G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5862G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4458G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3937G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4458G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP

6-3263889-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263889
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263889
    reference: chr 6
allele count: 1
allele frequency: 7.094211123723042e-5
allele num: 14096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3936C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-29C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4459C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-29C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4459C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-29C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-29C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3936C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5861C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-3263910-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263910
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263910
    reference: chr 6
allele count: 6
allele frequency: 3.573130061934254e-4
allele num: 16792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.175-8T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4480T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3915T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.175-8T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5840T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4480T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.175-8T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.175-8T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3915T>C
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
hgvs: c.175-8T>C
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-3263927-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263927
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263927
    reference: chr 6
allele count: 1
allele frequency: 5.117707267144319e-5
allele num: 19540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4497C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.184C>T
  hgvsp: ENSP00000392353.2:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3898C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.184C>T
  hgvsp: ENSP00000424330.1:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4497C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.184C>T
  hgvsp: ENSP00000413353.2:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3898C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.184C>T
  hgvsp: ENSP00000418241.2:p.Pro62Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5823C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro62Ser
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP

6-3263930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263930
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263930
    reference: chr 6
allele count: 1
allele frequency: 4.989522003792037e-5
allele num: 20042
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.187G>A
  hgvsp: ENSP00000392353.2:p.Val63Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.187G>A
  hgvsp: ENSP00000418241.2:p.Val63Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.187G>A
  hgvsp: ENSP00000413353.2:p.Val63Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5820G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4500G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4500G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3895G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.187G>A
  hgvsp: ENSP00000424330.1:p.Val63Met
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3895G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val63Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-3263936-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263936
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263936
    reference: chr 6
allele count: 12
allele frequency: 5.808325266214908e-4
allele num: 20660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.193A>G
  hgvsp: ENSP00000424330.1:p.Thr65Ala
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3889A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.193A>G
  hgvsp: ENSP00000392353.2:p.Thr65Ala
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3889A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5814A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.193A>G
  hgvsp: ENSP00000418241.2:p.Thr65Ala
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.193A>G
  hgvsp: ENSP00000413353.2:p.Thr65Ala
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4506A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4506A>G
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5369
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr65Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

6-3263965-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263965
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263965
    reference: chr 6
allele count: 1
allele frequency: 4.682963379226374e-5
allele num: 21354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.222G>A
  hgvsp: ENST00000419065.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3860G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.222G>A
  hgvsp: ENST00000438998.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3860G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.222G>A
  hgvsp: ENST00000473000.2:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.222G>A
  hgvsp: ENST00000324987.4:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4535G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5785G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4535G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr74Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

6-3263971-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263971
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263971
    reference: chr 6
allele count: 1
allele frequency: 4.679895170348185e-5
allele num: 21368
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.228T>C
  hgvsp: ENST00000419065.2:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.228T>C
  hgvsp: ENST00000438998.2:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3854T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4541T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.228T>C
  hgvsp: ENST00000324987.4:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4541T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.228T>C
  hgvsp: ENST00000473000.2:c.228T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5779T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3854T>C
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser76Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-3263987-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3263987
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3263987
    reference: chr 6
allele count: 1
allele frequency: 4.686035613870666e-5
allele num: 21340
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.244C>T
  hgvsp: ENSP00000392353.2:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3838C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5763C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4557C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.244C>T
  hgvsp: ENSP00000418241.2:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.244C>T
  hgvsp: ENSP00000424330.1:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.244C>T
  hgvsp: ENSP00000413353.2:p.Arg82Cys
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4557C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3838C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg82Cys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

6-3264000-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3264000
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3264000
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 21202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.257A>T
  hgvsp: ENSP00000418241.2:p.Tyr86Phe
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3825A>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.250+7A>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3825A>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.250+7A>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.250+7A>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4570A>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4570A>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5750A>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr86Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD

6-3264002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3264002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3264002
    reference: chr 6
allele count: 1
allele frequency: 4.734848484848485e-5
allele num: 21120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.259C>T
  hgvsp: ENSP00000418241.2:p.Pro87Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4572C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5748C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.250+9C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.250+9C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4572C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3823C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.250+9C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3823C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1330
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro87Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

6-3264018-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3264018
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3264018
    reference: chr 6
allele count: 1
allele frequency: 4.874244492103724e-5
allele num: 20516
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.250+25A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4588A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5732A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.250+25A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4588A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3807A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.250+25A>G
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.275A>G
  hgvsp: ENSP00000418241.2:p.His92Arg
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3807A>G
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6244
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His92Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

6-3264029-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3264029
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3264029
    reference: chr 6
allele count: 3
allele frequency: 1.501802162595114e-4
allele num: 19976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.286G>A
  hgvsp: ENSP00000418241.2:p.Gly96Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4599G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5721G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.250+36G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3796G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4599G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3796G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.250+36G>A
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.250+36G>A
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly96Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

6-3264045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3264045
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3264045
    reference: chr 6
allele count: 1
allele frequency: 5.221932114882507e-5
allele num: 19150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3780T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.302T>C
  hgvsp: ENSP00000418241.2:p.Leu101Ser
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4615T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000392353
  ensembl transcript: ENST00000419065
  gene symbol: PSMG4
  hgvsc: ENST00000419065.2:c.250+52T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4615T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5705T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.250+52T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.250+52T>C
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3780T>C
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu101Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

6-3264071-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3264071
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 3264071
    reference: chr 6
allele count: 3
allele frequency: 1.760150199483689e-4
allele num: 17044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000424330
  ensembl transcript: ENST00000324987
  gene symbol: PSMG4
  hgvsc: ENST00000324987.4:c.250+78C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000413353
  ensembl transcript: ENST00000438998
  gene symbol: PSMG4
  hgvsc: ENST00000438998.2:c.250+78C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000422147
  ensembl transcript: ENST00000509933
  gene symbol: PSMG4
  hgvsc: ENST00000509933.1:c.*128-5679C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000418241
  ensembl transcript: ENST00000473000
  gene symbol: PSMG4
  hgvsc: ENST00000473000.2:c.*13C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369660
  ensembl transcript: ENST00000380305
  gene symbol: PSMG4
  hgvsc: ENST00000380305.4:c.175-3754C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000369661
  ensembl transcript: ENST00000380306
  gene symbol: PSMG4
  hgvsc: ENST00000380306.4:c.254-3754C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000407702
  ensembl transcript: ENST00000451246
  gene symbol: PSMG4
  hgvsc: ENST00000451246.2:c.174+4641C>T
  variant of: http://identifiers.org/hgnc/21108
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000180822
  ensembl protein: ENSP00000415768
  ensembl transcript: ENST00000454610
  gene symbol: PSMG4
  hgvsc: ENST00000454610.2:c.137+4641C>T
  variant of: http://identifiers.org/hgnc/21108
canonical: false
consequence: 3' UTR
filter: PASS
num of homozygotes: 0
reference allele: C

South Asian
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.458e0

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 5.781e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.913e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e0

FS
type: SiteQuality
SIO_000300: 1.301e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

DP
type: SiteQuality
SIO_000300: 4.89421e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.661e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.304801670146138e-4
allele num: 7664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

FS
type: SiteQuality
SIO_000300: 2.057e0

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
type: SiteQuality
SIO_000300: 4.88273e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.125e0

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.610966057441253e-4
allele num: 7660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 940
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.87545e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.639e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.305483028720627e-4
allele num: 7660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e0

FS
type: SiteQuality
SIO_000300: 2.075e0

MQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

DP
type: SiteQuality
SIO_000300: 4.87531e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

QD
type: SiteQuality
SIO_000300: 1.542e1

VQSLOD
type: SiteQuality
SIO_000300: -4.774e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

African
type: Population
allele count: 12
allele frequency: 1.279317697228145e-2
allele num: 938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.84931506849315e-3
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.854368932038835e-3
allele num: 206
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.8859e5

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.134e0

QD
type: SiteQuality
SIO_000300: 1.171e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.044386422976501e-3
allele num: 7660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.92e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.327e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

DP
type: SiteQuality
SIO_000300: 4.869e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

FS
type: SiteQuality
SIO_000300: 1.903e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.478e0

African
type: Population
allele count: 1
allele frequency: 1.075268817204301e-3
allele num: 930
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.098360655737705e-3
allele num: 488
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 1.36986301369863e-2
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 5.521472392638037e-3
allele num: 1630
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.941747572815534e-2
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 86
allele frequency: 1.122715404699739e-2
allele num: 7660
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.11e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

DP
type: SiteQuality
SIO_000300: 4.87968e5

QD
type: SiteQuality
SIO_000300: 1.252e1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.815e0

FS
type: SiteQuality
SIO_000300: 5.97e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
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African
type: Population
allele count: 6
allele frequency: 6.46551724137931e-3
allele num: 928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.07e-2

FS
type: SiteQuality
SIO_000300: 1.767e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

DP
type: SiteQuality
SIO_000300: 4.80807e5

QD
type: SiteQuality
SIO_000300: 1.161e1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

MQ
type: SiteQuality
SIO_000300: 5.99e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

DP
type: SiteQuality
SIO_000300: 4.79587e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.876876876876877e-4
allele num: 5328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.549e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

DP
type: SiteQuality
SIO_000300: 4.76326e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e0

VQSLOD
type: SiteQuality
SIO_000300: -1.332e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 9.959e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.312335958005249e-4
allele num: 7620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.271e0

QD
type: SiteQuality
SIO_000300: 1.587e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.144e0

DP
type: SiteQuality
SIO_000300: 4.75656e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.94114555964267e-4
allele num: 7612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

DP
type: SiteQuality
SIO_000300: 4.74779e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.251e0

QD
type: SiteQuality
SIO_000300: 1.546e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.61e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5306
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

MQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

FS
type: SiteQuality
SIO_000300: 1.481e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

DP
type: SiteQuality
SIO_000300: 4.73614e5

VQSLOD
type: SiteQuality
SIO_000300: 2.49e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 5.279831045406547e-4
allele num: 7576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.324252743094968e-3
allele num: 5286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
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VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

QD
type: SiteQuality
SIO_000300: 1.566e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.63e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.70651e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.322051824431518e-4
allele num: 7564
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.659e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.62e-2

QD
type: SiteQuality
SIO_000300: 1.118e1

DP
type: SiteQuality
SIO_000300: 4.69436e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 6.896551724137931e-3
allele num: 290
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 3.41409691629956e-2
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.509e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

QD
type: SiteQuality
SIO_000300: 1.256e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 4.6816e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.329787234042553e-4
allele num: 7520
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.119e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 4.58952e5

VQSLOD
type: SiteQuality
SIO_000300: -2.336e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 4.05e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.908396946564885e-4
allele num: 5240
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

DP
type: SiteQuality
SIO_000300: 4.54906e5

FS
type: SiteQuality
SIO_000300: 1.069e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.464e0

VQSLOD
type: SiteQuality
SIO_000300: -2.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.346257404415724e-4
allele num: 7428
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.018e0

VQSLOD
type: SiteQuality
SIO_000300: -1.345e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.202e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.64e0

DP
type: SiteQuality
SIO_000300: 4.40556e5

South Asian
type: Population
allele count: 4
allele frequency: 5.387931034482759e-4
allele num: 7424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5206
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.044e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

MQ
type: SiteQuality
SIO_000300: 5.915e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

QD
type: SiteQuality
SIO_000300: 1.642e1

DP
type: SiteQuality
SIO_000300: 4.39519e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.927525057825752e-4
allele num: 5188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

MQ
type: SiteQuality
SIO_000300: 5.993e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.91e-2

QD
type: SiteQuality
SIO_000300: 1.576e1

VQSLOD
type: SiteQuality
SIO_000300: 4.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.34907e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 2.727768685215494e-3
allele num: 7332
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e0

DP
type: SiteQuality
SIO_000300: 4.34817e5

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.4e0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.34817e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.18e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.414027149321267e-4
allele num: 7072
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.41e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

DP
type: SiteQuality
SIO_000300: 4.30731e5

QD
type: SiteQuality
SIO_000300: 1.015e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5122
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.118e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.147e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.395e0

QD
type: SiteQuality
SIO_000300: 1.538e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.34e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.99e-1

DP
type: SiteQuality
SIO_000300: 4.30694e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.955416503715291e-4
allele num: 5114
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.258e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.606e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.411e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.082e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 4.30736e5

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 215
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.333333333333333e-3
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.5e-2
allele num: 40
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 1.345e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.253e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.740000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.0314e1

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

DP
type: SiteQuality
SIO_000300: 2.6535e4

GenotypeQuality
all individuals: 160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5523
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 7.352941176470588e-3
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.202e0

QD
type: SiteQuality
SIO_000300: 1.129e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.357e0

DP
type: SiteQuality
SIO_000300: 3.0371e4

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5857
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.77e0

DP
type: SiteQuality
SIO_000300: 3.3573e4

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.71e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 4.937e1

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5923
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.37e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 3.4163e4

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 333
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.091703056768559e-3
allele num: 916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.23e-2

FS
type: SiteQuality
SIO_000300: 9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.379999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.363e1

DP
type: SiteQuality
SIO_000300: 4.0828e4

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-2

QD
type: SiteQuality
SIO_000300: 2.234e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.4473e4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.219512195121951e-2
allele num: 82
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.406e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
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SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.093e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.18e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

DP
type: SiteQuality
SIO_000300: 6.7309e4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1984
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.8767e4

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

QD
type: SiteQuality
SIO_000300: 1.07e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

FS
type: SiteQuality
SIO_000300: 1.158e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 8.064516129032258e-3
allele num: 1984
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.524390243902439e-3
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 1.785714285714286e-2
allele num: 224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.0e-2
allele num: 20
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.25e-2
allele num: 16
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 1.158e0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

DP
type: SiteQuality
SIO_000300: 6.8767e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-2

QD
type: SiteQuality
SIO_000300: 1.07e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.830917874396135e-4
allele num: 2070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.414e0

DP
type: SiteQuality
SIO_000300: 7.2285e4

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.88e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.573e0

FS
type: SiteQuality
SIO_000300: 8.382999999999999e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 5.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.83e-2

MQ
type: SiteQuality
SIO_000300: 5.443e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 7.3419e4

QD
type: SiteQuality
SIO_000300: 9.56e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2126
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.74e-2

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.546e4

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
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SIO_000300: 0.0e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.027e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.533091568449683e-4
allele num: 2206
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
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MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.069e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.508566275924256e-4
allele num: 2218
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.444987775061125e-3
allele num: 818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 8.3794e4

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.049e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.46e-1

FS
type: SiteQuality
SIO_000300: 1.946e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.549590536851683e-4
allele num: 2198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.298e4

VQSLOD
type: SiteQuality
SIO_000300: -1.39e0

MQRankSum
type: SiteQuality
SIO_000300: -1.268e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 5.766e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.06e-2

QD
type: SiteQuality
SIO_000300: 1.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.63821892393321e-4
allele num: 2156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

MQRankSum
type: SiteQuality
SIO_000300: -3.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.348e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 8.3427e4

GenotypeQuality
all individuals: 4625
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.336898395721925e-3
allele num: 748
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.533783783783784e-3
allele num: 1184
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.702e0

QD
type: SiteQuality
SIO_000300: 5.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

FS
type: SiteQuality
SIO_000300: 1.4148e1

DP
type: SiteQuality
SIO_000300: 8.5151e4

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 11
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

DP
type: SiteQuality
SIO_000300: 8.7181e4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.52e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 33

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.785714285714286e-2
allele num: 112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 5.066666666666667e-2
allele num: 750
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.0358e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.64e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

QD
type: SiteQuality
SIO_000300: 1.249e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.803073967339097e-4
allele num: 2082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.021e0

DP
type: SiteQuality
SIO_000300: 9.0324e4

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e0

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 4.27807486631016e-2
allele num: 374
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.63e-2

FS
type: SiteQuality
SIO_000300: 2.856e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.3101e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3044
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.88e-2

DP
type: SiteQuality
SIO_000300: 8.295e4

FS
type: SiteQuality
SIO_000300: 3.522e0

VQSLOD
type: SiteQuality
SIO_000300: -2.125e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 5.5e0

GenotypeQuality
all individuals: 3419
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.306878306878307e-4
allele num: 3024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

DP
type: SiteQuality
SIO_000300: 7.9929e4

MQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

FS
type: SiteQuality
SIO_000300: 2.017e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 1

GenotypeQuality
all individuals: 2694
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 954
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.4278e4

VQSLOD
type: SiteQuality
SIO_000300: -1.669e0

QD
type: SiteQuality
SIO_000300: 9.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 30
bin: 7.25e1
variant carriers: 30

GenotypeQuality
all individuals: 547
bin: 2.25e1
variant carriers: 513

GenotypeQuality
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bin: 7.75e1
variant carriers: 58

GenotypeQuality
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variant carriers: 785

GenotypeQuality
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bin: 6.25e1
variant carriers: 66

GenotypeQuality
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variant carriers: 78

GenotypeQuality
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bin: 2.75e1
variant carriers: 218

GenotypeQuality
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bin: 9.25e1
variant carriers: 41

GenotypeQuality
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variant carriers: 284

GenotypeQuality
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bin: 6.75e1
variant carriers: 41

GenotypeQuality
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bin: 4.25e1
variant carriers: 63

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 68

GenotypeQuality
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variant carriers: 95

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 95

GenotypeQuality
all individuals: 71
bin: 8.25e1
variant carriers: 71

European (Non-Finnish)
type: Population
allele count: 219
allele frequency: 8.051470588235294e-1
allele num: 272
num of homozygotes: 88

East Asian
type: Population
allele count: 22
allele frequency: 7.857142857142857e-1
allele num: 28
num of homozygotes: 8

South Asian
type: Population
allele count: 883
allele frequency: 7.225859247135843e-1
allele num: 1222
num of homozygotes: 301

African
type: Population
allele count: 21
allele frequency: 5.25e-1
allele num: 40
num of homozygotes: 5

Other
type: Population
allele count: 11
allele frequency: 7.857142857142857e-1
allele num: 14
num of homozygotes: 4

Latino
type: Population
allele count: 21
allele frequency: 8.076923076923077e-1
allele num: 26
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 2.631e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.022e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.614e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 3.4743e4

GenotypeQuality
all individuals: 84
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.785515320334262e-3
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.93e-1

MQ
type: SiteQuality
SIO_000300: 5.341e1

DP
type: SiteQuality
SIO_000300: 2.5612e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.44e-2

FS
type: SiteQuality
SIO_000300: 3.283e0

VQSLOD
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

QD
type: SiteQuality
SIO_000300: 6.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
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GenotypeQuality
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GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 19
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.272727272727273e-2
allele num: 44
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.7931e4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 8.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

QD
type: SiteQuality
SIO_000300: 1.918e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.404e-1

GenotypeQuality
all individuals: 216
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1171
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1221
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 826
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 2229
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 577
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variant carriers: 2

GenotypeQuality
all individuals: 179
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variant carriers: 2

GenotypeQuality
all individuals: 751
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variant carriers: 2

GenotypeQuality
all individuals: 2298
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 987
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variant carriers: 2

GenotypeQuality
all individuals: 190
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variant carriers: 2

GenotypeQuality
all individuals: 232
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variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 4.310344827586207e-3
allele num: 5800
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 8.027522935779817e-3
allele num: 1744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.3947e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 2.10725e5

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.935e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.78e0

MQ
type: SiteQuality
SIO_000300: 5.633e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.342e0

QD
type: SiteQuality
SIO_000300: 7.7e-1

GenotypeQuality
all individuals: 2250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.75e1
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GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 386
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GenotypeQuality
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GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.0351966873706e-3
allele num: 1932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 7.858e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.541e1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.649999999999999e-1

DP
type: SiteQuality
SIO_000300: 2.01528e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
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GenotypeQuality
all individuals: 454
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GenotypeQuality
all individuals: 60
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 718
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variant carriers: 0

GenotypeQuality
all individuals: 825
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GenotypeQuality
all individuals: 103
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GenotypeQuality
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GenotypeQuality
all individuals: 377
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GenotypeQuality
all individuals: 151
bin: 9.25e1
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GenotypeQuality
all individuals: 673
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1442
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.175983436853002e-4
allele num: 1932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.02655e5

FS
type: SiteQuality
SIO_000300: 4.505e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 9.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.146e0

MQ
type: SiteQuality
SIO_000300: 5.839e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.76e-1

GenotypeQuality
all individuals: 1948
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
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GenotypeQuality
all individuals: 695
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 7.5e0
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GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 277
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1938
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 4.068348250610252e-4
allele num: 2458
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1446
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

MQ
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SIO_000300: 6.0e1

FS
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VQSLOD
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MQRankSum
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DP
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SIO_000300: 2.03312e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
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SIO_000300: 9.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 9.803921568627451e-3
allele num: 102
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

European (Non-Finnish)
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allele count: 19
allele frequency: 3.428365211115121e-3
allele num: 5542
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

European (Finnish)
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allele count: 70
allele frequency: 1.325757575757576e-1
allele num: 528
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
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FS
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VQSLOD
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QD
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DP
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BaseQRankSum
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -5.07e-2

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 3.270111183780249e-4
allele num: 3058
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 504
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 2.09576e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.10783e5

MQ
type: SiteQuality
SIO_000300: 5.89e1

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.591e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1568
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 1.26528890763391e-3
allele num: 4742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7316
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.87e-2

FS
type: SiteQuality
SIO_000300: 9.629e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.246e0

QD
type: SiteQuality
SIO_000300: 1.401e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1600
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Latino
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 1.533272002453235e-4
allele num: 6522
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QD
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8222
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European (Finnish)
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South Asian
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allele frequency: 1.45985401459854e-4
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Other
type: Population
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allele frequency: 0.0e0
allele num: 230
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 400
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East Asian
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allele frequency: 0.0e0
allele num: 610
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
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MQRankSum
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ClippingRankSum
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DP
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MQ
type: SiteQuality
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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allele frequency: 5.159474671669793e-3
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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Latino
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
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DP
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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allele frequency: 4.655493482309125e-4
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Latino
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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FS
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
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QD
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SIO_000300: 1.214e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.26e-1

DP
type: SiteQuality
SIO_000300: 2.90133e5

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.96e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

QD
type: SiteQuality
SIO_000300: 1.556e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.74e-1

DP
type: SiteQuality
SIO_000300: 2.90328e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.02e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.08e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.473e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1389
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.295672454003628e-4
allele num: 7718
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.90457e5

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 9.49e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.88709e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.07e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 8.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 2.87116e5

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

QD
type: SiteQuality
SIO_000300: 1.135e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.191327138432213e-4
allele num: 8394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.29e-2

DP
type: SiteQuality
SIO_000300: 2.76702e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.048e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

GenotypeQuality
all individuals: 130
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.884422110552764e-3
allele num: 1592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2122
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 224
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VQSLOD
type: SiteQuality
SIO_000300: -3.287e-1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

MQ
type: SiteQuality
SIO_000300: 5.911e1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

DP
type: SiteQuality
SIO_000300: 2.67348e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.297e0

FS
type: SiteQuality
SIO_000300: 3.502e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.71e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 217
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.739336492890995e-4
allele num: 2110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8046
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 1.3403e1

MQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.723e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e0

ReadPosRankSum
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SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 1.641e1