2-240061416-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061416
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061416
    reference: chr 2
allele count: 44
allele frequency: 3.644797879390325e-4
allele num: 120720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.605C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.849C>T
  hgvsp: ENST00000541256.1:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-307C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1394C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.942C>T
  hgvsp: ENST00000345617.3:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1414C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.304C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.173C>T
  hgvsp: ENST00000445704.1:c.173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1285C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4754
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn314Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

2-240061422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061422
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061422
    reference: chr 2
allele count: 30
allele frequency: 2.484677820109326e-4
allele num: 120740
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.936G>A
  hgvsp: ENST00000345617.3:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1388G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1408G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.298G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.167G>A
  hgvsp: ENST00000445704.1:c.167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-313G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.599G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.843G>A
  hgvsp: ENST00000541256.1:c.843G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1279G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1651
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala312Ala
num of homozygotes: 1
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

2-240061423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061423
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061423
    reference: chr 2
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.842C>T
  hgvsp: ENSP00000443057.1:p.Ala281Val
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1407C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1387C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.166C>T
  hgvsp: ENSP00000391226.1:p.Ala56Val
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.598C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.935C>T
  hgvsp: ENSP00000264606.3:p.Ala312Val
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-314C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1278C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.297C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19088
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala312Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

2-240061424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061424
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061424
    reference: chr 2
allele count: 123
allele frequency: 1.018515451624656e-3
allele num: 120764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.841G>A
  hgvsp: ENSP00000443057.1:p.Ala281Thr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-315G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.296G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1406G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.597G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1277G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1386G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.934G>A
  hgvsp: ENSP00000264606.3:p.Ala312Thr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.165G>A
  hgvsp: ENSP00000391226.1:p.Ala56Thr
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19089
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala312Thr
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-240061430-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061430
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061430
    reference: chr 2
allele count: 4
allele frequency: 3.311477581296774e-5
allele num: 120792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1271G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.159G>A
  hgvsp: ENSP00000391226.1:p.Val54Ile
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.928G>A
  hgvsp: ENSP00000264606.3:p.Val310Ile
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.835G>A
  hgvsp: ENSP00000443057.1:p.Val279Ile
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.591G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1400G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-321G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.290G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1380G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val310Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-240061431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061431
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061431
    reference: chr 2
allele count: 3
allele frequency: 2.483813813316554e-5
allele num: 120782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1270C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.158C>T
  hgvsp: ENST00000445704.1:c.158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-322C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1399C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.590C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.927C>T
  hgvsp: ENST00000345617.3:c.927C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.289C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.834C>T
  hgvsp: ENST00000541256.1:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1379C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26485
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser309Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum

2-240061432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061432
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061432
    reference: chr 2
allele count: 2
allele frequency: 1.655519502019734e-5
allele num: 120808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.589G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.288G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.833G>A
  hgvsp: ENSP00000443057.1:p.Ser278Asn
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1378G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.157G>A
  hgvsp: ENSP00000391226.1:p.Ser53Asn
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.926G>A
  hgvsp: ENSP00000264606.3:p.Ser309Asn
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1269G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1398G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-323G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser309Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

2-240061436-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061436
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061436
    reference: chr 2
allele count: 3
allele frequency: 2.483155925637757e-5
allele num: 120814
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.922G>A
  hgvsp: ENSP00000264606.3:p.Gly308Arg
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-327G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1394G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.829G>A
  hgvsp: ENSP00000443057.1:p.Gly277Arg
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.153G>A
  hgvsp: ENSP00000391226.1:p.Gly52Arg
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1265G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1374G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.585G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.284G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7843
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9394
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly308Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

2-240061437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061437
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061437
    reference: chr 2
allele count: 3
allele frequency: 2.482868209355447e-5
allele num: 120828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-328C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1393C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.921C>T
  hgvsp: ENST00000345617.3:c.921C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.152C>T
  hgvsp: ENST00000445704.1:c.152C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.828C>T
  hgvsp: ENST00000541256.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1264C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.584C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1373C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.283C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7934
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser307Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-240061443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061443
    reference: chr 2
allele count: 2
allele frequency: 1.655026314918407e-5
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-334C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.822C>T
  hgvsp: ENST00000541256.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1258C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.578C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1387C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.915C>T
  hgvsp: ENST00000345617.3:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.277C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.146C>T
  hgvsp: ENST00000445704.1:c.146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1367C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn305Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

2-240061446-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061446
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061446
    reference: chr 2
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.575C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.912C>A
  hgvsp: ENSP00000264606.3:p.Asn304Lys
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.819C>A
  hgvsp: ENSP00000443057.1:p.Asn273Lys
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1384C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.274C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.143C>A
  hgvsp: ENSP00000391226.1:p.Asn48Lys
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-337C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1364C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1255C>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn304Lys
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

2-240061455-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061455
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061455
    reference: chr 2
allele count: 1
allele frequency: 8.277186418792524e-6
allele num: 120814
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.566C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.903C>T
  hgvsp: ENST00000345617.3:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1246C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1375C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.134C>T
  hgvsp: ENST00000445704.1:c.134C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.810C>T
  hgvsp: ENST00000541256.1:c.810C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-346C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.265C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1355C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9391
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser301Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS

2-240061463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061463
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061463
    reference: chr 2
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.558G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1238G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1367G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.802G>A
  hgvsp: ENSP00000443057.1:p.Gly268Arg
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.126G>A
  hgvsp: ENSP00000391226.1:p.Gly43Arg
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.257G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.895G>A
  hgvsp: ENSP00000264606.3:p.Gly299Arg
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-354G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1347G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26484
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly299Arg
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

2-240061464-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061464
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061464
    reference: chr 2
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-355C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.256C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.801C>T
  hgvsp: ENST00000541256.1:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.894C>T
  hgvsp: ENST00000345617.3:c.894C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.557C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1346C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1237C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.125C>T
  hgvsp: ENST00000445704.1:c.125C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1366C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9396
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser298Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-240061473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061473
    reference: chr 2
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1357C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.548C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.116C>T
  hgvsp: ENST00000445704.1:c.116C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.792C>T
  hgvsp: ENST00000541256.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1228C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.885C>T
  hgvsp: ENST00000345617.3:c.885C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1337C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-364C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.247C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala295Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/2-240061475-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061475
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061475
    reference: chr 2
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1226G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.114G>T
  hgvsp: ENSP00000391226.1:p.Ala39Ser
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.790G>T
  hgvsp: ENSP00000443057.1:p.Ala264Ser
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.245G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.546G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1335G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.883G>T
  hgvsp: ENSP00000264606.3:p.Ala295Ser
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-366G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1355G>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala295Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-240061482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061482
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061482
    reference: chr 2
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.238C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1328C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-373C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1219C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.107C>T
  hgvsp: ENST00000445704.1:c.107C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1348C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.876C>T
  hgvsp: ENST00000345617.3:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.539C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.783C>T
  hgvsp: ENST00000541256.1:c.783C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19072
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7915
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Cys292Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-240061485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061485
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061485
    reference: chr 2
allele count: 3
allele frequency: 2.489006886252385e-5
allele num: 120530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.235G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.873G>A
  hgvsp: ENST00000345617.3:c.873G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.536G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.104G>A
  hgvsp: ENST00000445704.1:c.104G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.780G>A
  hgvsp: ENST00000541256.1:c.780G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-376G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1345G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1216G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1325G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7830
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala291Ala
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ

2-240061487-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061487
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061487
    reference: chr 2
allele count: 5
allele frequency: 4.154963519420299e-5
allele num: 120338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.778G>A
  hgvsp: ENSP00000443057.1:p.Ala260Thr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1343G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1214G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.534G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.871G>A
  hgvsp: ENSP00000264606.3:p.Ala291Thr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.102G>A
  hgvsp: ENSP00000391226.1:p.Ala35Thr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1323G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-378G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.233G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9171
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2486
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala291Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

2-240061488-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061488
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061488
    reference: chr 2
allele count: 132
allele frequency: 1.096819224249676e-3
allele num: 120348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.870C>T
  hgvsp: ENST00000345617.3:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1213C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.101C>T
  hgvsp: ENST00000445704.1:c.101C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.777C>T
  hgvsp: ENST00000541256.1:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.533C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-379C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.232C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1342C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1322C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18898
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser290Ser
num of homozygotes: 5
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-240061496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061496
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061496
    reference: chr 2
allele count: 18
allele frequency: 1.498052531708779e-4
allele num: 120156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-4G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-4G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16835
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18820
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2482
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
hgvs: c.866-4G>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/2-240061496-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061496
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061496
    reference: chr 2
allele count: 1
allele frequency: 8.32251406504877e-6
allele num: 120156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-4G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-4G>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
hgvs: c.866-4G>T
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

2-240061497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061497
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061497
    reference: chr 2
allele count: 1
allele frequency: 8.323761008173934e-6
allele num: 120138
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-5C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-5C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
hgvs: c.866-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum

2-240061502-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061502
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061502
    reference: chr 2
allele count: 1
allele frequency: 8.354637659364713e-6
allele num: 119694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-10G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-10G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16735
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7780
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

2-240061513-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061513
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061512
    reference: chr 2
allele count: 2750
allele frequency: 2.300446704923792e-2
allele num: 119542
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-22delC
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-22delC
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 4.75e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 6.25e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16339
  bin: 3.25e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 5.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 17955
  bin: 2.75e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 2.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 7671
  bin: 3.75e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 4603
  bin: 4.25e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.75e1
  variant carriers: 213
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 8.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 23167
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 319
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: TG
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

2-240061514-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061514
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061514
    reference: chr 2
allele count: 1
allele frequency: 8.721893697559614e-6
allele num: 114654
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-22C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-22C>G
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3635
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2375
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

2-240061517-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061517
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061517
    reference: chr 2
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-25C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-25C>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

2-240061519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061519
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061519
    reference: chr 2
allele count: 1
allele frequency: 8.381667616588997e-6
allele num: 119308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-27C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-27C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16431
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7834
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3571
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8665
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

2-240061520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061520
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061520
    reference: chr 2
allele count: 1
allele frequency: 8.395882659143956e-6
allele num: 119106
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-28A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-28A>G
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

2-240061522-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061522
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061522
    reference: chr 2
allele count: 1
allele frequency: 8.395741679819996e-6
allele num: 119108
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-30A>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-30A>G
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7992
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-240061528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061528
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061528
    reference: chr 2
allele count: 2
allele frequency: 1.686084742619164e-5
allele num: 118618
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-36G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-36G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14415
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

2-240061532-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061532
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061532
    reference: chr 2
allele count: 7
allele frequency: 5.920062245225893e-5
allele num: 118242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-40G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-40G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14744
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13031
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17079
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

2-240061533-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061533
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061533
    reference: chr 2
allele count: 2
allele frequency: 1.693193362682018e-5
allele num: 118120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-41C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-240061537-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061537
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061537
    reference: chr 2
allele count: 1
allele frequency: 8.507163031272332e-6
allele num: 117548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-45C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-45C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7091
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9007
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3413
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

2-240061540-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061540
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061540
    reference: chr 2
allele count: 1
allele frequency: 8.538251366120219e-6
allele num: 117120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-48C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-48C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6574
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7793
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4116
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-240061542-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061542
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061542
    reference: chr 2
allele count: 2
allele frequency: 1.708759099142203e-5
allele num: 117044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-50C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-50C>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4113
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4405
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

2-240061543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061543
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061543
    reference: chr 2
allele count: 1
allele frequency: 8.56384345294168e-6
allele num: 116770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-51G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-51G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4774
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4337
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

2-240061544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240061544
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240061544
    reference: chr 2
allele count: 2
allele frequency: 1.711683954674609e-5
allele num: 116844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.97-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-52G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-52G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10698
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1597
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

2-240062524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062524
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062524
    reference: chr 2
allele count: 7
allele frequency: 7.572479446127218e-4
allele num: 9244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1032G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1032G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1032G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1032G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1032G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+50G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1032G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1032G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1032G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1967
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-240062541-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062541
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062541
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 9574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1049G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1049G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1049G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1049G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1049G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1049G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1049G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+33G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1049G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3080
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

2-240062542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062542
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062542
    reference: chr 2
allele count: 3
allele frequency: 3.073140749846343e-4
allele num: 9762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1050C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1050C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1050C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1050C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1050C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1050C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1050C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+32C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1050C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

2-240062547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062547
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062547
    reference: chr 2
allele count: 1
allele frequency: 1.012350678274954e-4
allele num: 9878
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1055G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+27G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-240062548-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062548
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062548
    reference: chr 2
allele count: 2
allele frequency: 1.99203187250996e-4
allele num: 10040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1056C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1056C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1056C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1056C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1056C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1056C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1056C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+26C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1056C>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-240062550-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062550
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062550
    reference: chr 2
allele count: 1
allele frequency: 9.815469179426777e-5
allele num: 10188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1058T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1058T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1058T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+24T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1058T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1058T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1058T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1058T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1058T>G
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-240062555-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062555
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062555
    reference: chr 2
allele count: 1
allele frequency: 9.558401835213153e-5
allele num: 10462
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1063G>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+19G>C
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

2-240062558-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062558
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062558
    reference: chr 2
allele count: 1
allele frequency: 9.281603861147207e-5
allele num: 10774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1066T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1066T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1066T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1066T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+16T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1066T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1066T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1066T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1066T>C
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

2-240062567-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062567
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062567
    reference: chr 2
allele count: 3
allele frequency: 2.590226213089276e-4
allele num: 11582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1075C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+7C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1075C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1075C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1075C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1075C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1075C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1075C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1075C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2644
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3133
  bin: 7.5e0
  variant carriers: 0
hgvs: c.96+7C>T
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/2-240062572-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062572
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062572
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 12060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.96+2T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1080T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1080T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1080T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1080T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1080T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1080T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1080T>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1080T>G
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: splice donor
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 3.25e1
  variant carriers: 0
hgvs: c.96+2T>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

2-240062584-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062584
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062584
    reference: chr 2
allele count: 2
allele frequency: 1.514463122822959e-4
allele num: 13206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1092G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1092G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.86G>A
  hgvsp: ENST00000445704.1:c.86G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1092G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1092G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1092G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1092G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1092G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1092G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala29Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

2-240062585-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062585
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062585
    reference: chr 2
allele count: 4
allele frequency: 2.997601918465228e-4
allele num: 13344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1093C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1093C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1093C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1093C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1093C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.85C>T
  hgvsp: ENSP00000391226.1:p.Ala29Val
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1093C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1093C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1093C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1948
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala29Val
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

2-240062586-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062586
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062586
    reference: chr 2
allele count: 1
allele frequency: 7.440476190476191e-5
allele num: 13440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1094G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1094G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1094G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.84G>A
  hgvsp: ENSP00000391226.1:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1094G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1094G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1094G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1094G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1094G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3092
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala29Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

2-240062593-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062593
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062593
    reference: chr 2
allele count: 1
allele frequency: 7.227522405319457e-5
allele num: 13836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1101C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1101C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1101C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1101C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1101C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.77C>T
  hgvsp: ENST00000445704.1:c.77C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1101C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1101C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1101C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu26Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

2-240062614-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062614
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062614
    reference: chr 2
allele count: 5
allele frequency: 3.5780735651925e-4
allele num: 13974
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1122A>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1122A>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1122A>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1122A>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1122A>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1122A>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.56A>C
  hgvsp: ENST00000445704.1:c.56A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1122A>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1122A>C
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu19Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS

2-240062620-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062620
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062620
    reference: chr 2
allele count: 4
allele frequency: 2.901073397156948e-4
allele num: 13788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1128G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1128G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1128G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1128G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1128G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1128G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1128G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.50G>A
  hgvsp: ENST00000445704.1:c.50G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1128G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4238
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser17Ser
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-240062627-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062627
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062627
    reference: chr 2
allele count: 1
allele frequency: 7.164350193437455e-5
allele num: 13958
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1135G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1135G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1135G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1135G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1135G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1135G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.43G>A
  hgvsp: ENSP00000391226.1:p.Cys15Tyr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1135G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1135G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys15Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

2-240062631-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062631
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062631
    reference: chr 2
allele count: 1
allele frequency: 7.37354372511429e-5
allele num: 13562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1139C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1139C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1139C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1139C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1139C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1139C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1139C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.39C>T
  hgvsp: ENSP00000391226.1:p.His14Tyr
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1139C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3068
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
hgvs: p.His14Tyr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

2-240062643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062643
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062643
    reference: chr 2
allele count: 2
allele frequency: 1.517450682852807e-4
allele num: 13180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1151C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.27C>T
  hgvsp: ENSP00000391226.1:p.Pro10Ser
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1151C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1151C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1151C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1151C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1151C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1151C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1151C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3578
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro10Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

2-240062653-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062653
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062653
    reference: chr 2
allele count: 2
allele frequency: 1.600256040966555e-4
allele num: 12498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.17C>G
  hgvsp: ENSP00000391226.1:p.Phe6Leu
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1161C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1161C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1161C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1161C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1161C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1161C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1161C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1161C>G
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe6Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-240062660-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062660
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062660
    reference: chr 2
allele count: 1
allele frequency: 8.525149190110827e-5
allele num: 11730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1168A>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.10A>T
  hgvsp: ENSP00000391226.1:p.Tyr4Phe
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1168A>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1168A>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1168A>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1168A>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1168A>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1168A>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1168A>T
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr4Phe
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP

2-240062668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062668
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062668
    reference: chr 2
allele count: 1
allele frequency: 9.37031484257871e-5
allele num: 10672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1176G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1176G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1176G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1176G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1176G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1176G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1176G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000391226
  ensembl transcript: ENST00000445704
  gene symbol: HDAC4
  hgvsc: ENST00000445704.1:c.2G>A
  hgvsp: ENST00000445704.1:c.2G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1176G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: false
consequence: coding sequence
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3614
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ter1Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

2-240062692-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062692
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062692
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 8372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1200T>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1200T>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1200T>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1200T>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1200T>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1200T>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1200T>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1200T>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ

2-240062703-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240062703
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240062703
    reference: chr 2
allele count: 4
allele frequency: 5.320563979781857e-4
allele num: 7518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.773-1211T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.228-1211T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1318-1211T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1209-1211T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.529-1211T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.866-1211T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-383-1211T>C
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1338-1211T>C
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

2-240066238-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066238
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066238
    reference: chr 2
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+41C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+41C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2821
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2774
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2463
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

2-240066242-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066242
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066242
    reference: chr 2
allele count: 12
allele frequency: 9.892338383921653e-5
allele num: 121306
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+37C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+37C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+37C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+37C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+37C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+37C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+37C>G
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+37C>G
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-240066245-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066245
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066245
    reference: chr 2
allele count: 1
allele frequency: 8.244023083264634e-6
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+34G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+34G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+34G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+34G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+34G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+34G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+34G>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+34G>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7102
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-240066248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066248
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066248
    reference: chr 2
allele count: 3
allele frequency: 2.472880741204788e-5
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+31G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+31G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+31G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+31G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+31G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+31G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+31G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+31G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6459
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

2-240066249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066249
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066249
    reference: chr 2
allele count: 25
allele frequency: 2.060496167477129e-4
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+30C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+30C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+30C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+30C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+30C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+30C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+30C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+30C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

2-240066253-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066253
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066253
    reference: chr 2
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+26G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+26G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+26G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+26G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+26G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+26G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+26G>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+26G>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2858
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6285
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

2-240066254-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066254
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066254
    reference: chr 2
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+25C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+25C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+25C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+25C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+25C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+25C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+25C>T
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+25C>T
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5089
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1508
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

2-240066255-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 240066255
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 240066255
    reference: chr 2
allele count: 27
allele frequency: 2.22485909225749e-4
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000443057
  ensembl transcript: ENST00000541256
  gene symbol: HDAC4
  hgvsc: ENST00000541256.1:c.772+24C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000264606
  ensembl transcript: ENST00000345617
  gene symbol: HDAC4
  hgvsc: ENST00000345617.3:c.865+24C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000463007
  gene symbol: HDAC4
  hgvsc: ENST00000463007.1:n.1317+24C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000461113
  gene symbol: HDAC4
  hgvsc: ENST00000461113.1:n.528+24C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000493582
  gene symbol: HDAC4
  hgvsc: ENST00000493582.1:n.1337+24C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl protein: ENSP00000440481
  ensembl transcript: ENST00000543185
  gene symbol: HDAC4
  hgvsc: ENST00000543185.1:c.-384+24C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000535493
  gene symbol: HDAC4
  hgvsc: ENST00000535493.1:n.1208+24C>A
  variant of: http://identifiers.org/hgnc/14063
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000068024
  ensembl transcript: ENST00000553145
  gene symbol: HDAC4
  hgvsc: ENST00000553145.1:n.227+24C>A
  variant of: http://identifiers.org/hgnc/14063
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2859
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46229
  bin: 9.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 26398
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2479
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8110
bin: 9.75e1
variant carriers: 44

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9377
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.035731530661516e-5
allele num: 66272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 40
allele frequency: 3.461405330564209e-3
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

QD
type: SiteQuality
SIO_000300: 1.246e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.952e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.51e0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 2.051947e6

GenotypeQuality
all individuals: 9383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8067
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 3455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26406
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 17
allele frequency: 1.653696498054475e-3
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.32396002788752e-4
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.055966209081309e-4
allele num: 66290
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.33e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.046452e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 3455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2485
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26482
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508523155830442e-5
allele num: 66290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.167e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.366e0

QD
type: SiteQuality
SIO_000300: 1.281e1

DP
type: SiteQuality
SIO_000300: 2.043966e6

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8048
bin: 9.75e1
variant carriers: 121

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2483
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9390
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 120
allele frequency: 7.271845836868259e-3
allele num: 16502
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.29e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.15e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 2.049606e6

GenotypeQuality
all individuals: 345
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3669
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4776
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7939
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.523249502442555e-5
allele num: 66324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

DP
type: SiteQuality
SIO_000300: 2.039446e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 4778
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7935
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9394
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.487561032318065e-4
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.602e0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

DP
type: SiteQuality
SIO_000300: 2.039215e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.587e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7933
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3670
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.0282e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.728e0

MQRankSum
type: SiteQuality
SIO_000300: 6.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.234e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.205e1

DP
type: SiteQuality
SIO_000300: 2.038952e6

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7933
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3458
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507295309296997e-5
allele num: 66344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.451e1

FS
type: SiteQuality
SIO_000300: 5.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.26e0

DP
type: SiteQuality
SIO_000300: 2.039316e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3672
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26632
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.909231962761831e-4
allele num: 10312
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.37e-1

DP
type: SiteQuality
SIO_000300: 2.039149e6

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 7.457e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 1.497e1

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4775
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7930
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2493
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 1.731601731601732e-4
allele num: 11550
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: -2.77e-1

VQSLOD
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MQRankSum
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FS
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.46e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

DP
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MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
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allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

MQRankSum
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QD
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.028e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.328e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

ReadPosRankSum
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SIO_000300: -5.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.58e-1

DP
type: SiteQuality
SIO_000300: 2.037486e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8600
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66270
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East Asian
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Latino
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European (Finnish)
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African
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Other
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Non-Finnish)
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African
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Latino
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European (Finnish)
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Other
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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Other
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 5.157e0

DP
type: SiteQuality
SIO_000300: 2.030528e6

VQSLOD
type: SiteQuality
SIO_000300: -4.323e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

MQ
type: SiteQuality
SIO_000300: 5.684e1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7911
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1642
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.944012441679627e-4
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512996641147457e-5
allele num: 66094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.328288707799767e-4
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

DP
type: SiteQuality
SIO_000300: 2.023411e6

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3636
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7916
bin: 9.75e1
variant carriers: 127

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
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variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25847
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2483
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 131
allele frequency: 7.94517224648229e-3
allele num: 16488
num of homozygotes: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51308821304282e-5
allele num: 66090
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.62e-2

QD
type: SiteQuality
SIO_000300: 1.469e1

DP
type: SiteQuality
SIO_000300: 2.023083e6

FS
type: SiteQuality
SIO_000300: 8.05e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4678
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7810
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 3365
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.950838860710105e-4
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.121855107608366e-4
allele num: 65980
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213297743266198e-4
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.011179e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

GenotypeQuality
all individuals: 25631
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9119
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 3365
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 4678
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.011179e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 2481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9106
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 3637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7789
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 293
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

DP
type: SiteQuality
SIO_000300: 2.00888e6

FS
type: SiteQuality
SIO_000300: 4.755e0

QD
type: SiteQuality
SIO_000300: 1.534e1

MQRankSum
type: SiteQuality
SIO_000300: -1.138e0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3625
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.39e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.016e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.84e-1

DP
type: SiteQuality
SIO_000300: 1.997509e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.999e0

QD
type: SiteQuality
SIO_000300: 1.132e1

GenotypeQuality
all individuals: 540
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 138
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8423
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3150
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 164
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3475
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2395
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 9943
bin: 9.75e1
variant carriers: 2339

GenotypeQuality
all individuals: 4386
bin: 7.75e1
variant carriers: 12

Latino
type: Population
allele count: 123
allele frequency: 1.071988844343734e-2
allele num: 11474
num of homozygotes: 2

African
type: Population
allele count: 2548
allele frequency: 2.490713587487781e-1
allele num: 10230
num of homozygotes: 317

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 9.304453935326418e-4
allele num: 65560
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.249635745507528e-4
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 1.235955056179775e-2
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.755e1

MQ
type: SiteQuality
SIO_000300: 6.005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.887e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.962293e6

GenotypeQuality
all individuals: 23212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8402
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65408
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.13e0

VQSLOD
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

DP
type: SiteQuality
SIO_000300: 1.851511e6

MQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

GenotypeQuality
all individuals: 1626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3576
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2280
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.527557130636686e-5
allele num: 65464
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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DP
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MQ
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ReadPosRankSum
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SIO_000300: -1.43e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

East Asian
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allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
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QD
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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SIO_000300: 1.96e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.531628120692296e-5
allele num: 65290
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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FS
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BaseQRankSum
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SIO_000300: -3.59e0

ClippingRankSum
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MQ
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SIO_000300: 6.0e1

InbreedingCoeff
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SIO_000300: 2.1e-3

ReadPosRankSum
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QD
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VQSLOD
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DP
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SIO_000300: 1.883029e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531675039823551e-5
allele num: 65288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
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QD
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MQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.194e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.076923076923077e-5
allele num: 65000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6234
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10088
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.661e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.863e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.088898498795329e-5
allele num: 64748
num of homozygotes: 0

East Asian
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allele num: 8510
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Other
type: Population
allele count: 1
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allele num: 878
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South Asian
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allele count: 3
allele frequency: 1.825039542523421e-4
allele num: 16438
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
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Latino
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allele frequency: 8.756567425569177e-5
allele num: 11420
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ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 6.084945843981989e-5
allele num: 16434
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European (Finnish)
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East Asian
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allele frequency: 0.0e0
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Latino
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African
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allele frequency: 9.964129135113592e-5
allele num: 10036
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European (Non-Finnish)
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allele count: 0
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.53e-1

MQ
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BaseQRankSum
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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South Asian
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Other
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European (Finnish)
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East Asian
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FS
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MQ
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Latino
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allele num: 11356
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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MQ
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VQSLOD
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FS
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DP
type: SiteQuality
SIO_000300: 1.74315e6

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.142e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.219e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.905e0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7792
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8771
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2439
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.002204850671477e-4
allele num: 9978
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.196e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

QD
type: SiteQuality
SIO_000300: 6.92e0

VQSLOD
type: SiteQuality
SIO_000300: -1.252e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 5.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.739806e6

GenotypeQuality
all individuals: 1602
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2721
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GenotypeQuality
all individuals: 3507
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006036217303823e-4
allele num: 9940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.651e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.596e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.737406e6

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

GenotypeQuality
all individuals: 4679
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7796
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3512
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variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.191043353978085e-4
allele num: 8396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563428285544542e-5
allele num: 63962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.942e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

FS
type: SiteQuality
SIO_000300: 3.17e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

MQRankSum
type: SiteQuality
SIO_000300: 7.65e-1

DP
type: SiteQuality
SIO_000300: 1.737536e6

QD
type: SiteQuality
SIO_000300: 5.97e0

GenotypeQuality
all individuals: 87
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1262
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 996
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 165
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GenotypeQuality
all individuals: 111
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.90424374319913e-3
allele num: 3676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

FS
type: SiteQuality
SIO_000300: 1.052e0

DP
type: SiteQuality
SIO_000300: 1.47581e5

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeQuality
all individuals: 312
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 856
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 986
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GenotypeQuality
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GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
all individuals: 424
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variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.754e0

VQSLOD
type: SiteQuality
SIO_000300: -2.327e0

DP
type: SiteQuality
SIO_000300: 1.52363e5

GenotypeQuality
all individuals: 132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 988
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.450980392156863e-4
allele num: 4080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.032520325203252e-3
allele num: 984
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 7.71e-1

DP
type: SiteQuality
SIO_000300: 1.53666e5

QD
type: SiteQuality
SIO_000300: 1.127e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.25e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.271e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 222
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 92
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 984
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.400384061449832e-4
allele num: 4166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3868
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.23e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.57016e5

VQSLOD
type: SiteQuality
SIO_000300: -9.693000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 991
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2979
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 987
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GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4248
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.004008016032064e-3
allele num: 998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.906e1

VQSLOD
type: SiteQuality
SIO_000300: -2.554e0

FS
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 5.891e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

DP
type: SiteQuality
SIO_000300: 1.58306e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
all individuals: 196
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 104
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GenotypeQuality
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GenotypeQuality
all individuals: 744
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
bin: 7.75e1
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GenotypeQuality
all individuals: 81
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Latino
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allele frequency: 4.032258064516129e-3
allele num: 248
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

VQSLOD
type: SiteQuality
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FS
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SIO_000300: 1.955e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

QD
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SIO_000300: 1.431e1

DP
type: SiteQuality
SIO_000300: 1.60878e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.106e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 2.215330084182543e-4
allele num: 4514
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 4048
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.888e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.11e-2

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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SIO_000300: -3.54e-1

DP
type: SiteQuality
SIO_000300: 1.65405e5

ClippingRankSum
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SIO_000300: 7.099999999999999e-2

MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.12e-1

QD
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MQRankSum
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SIO_000300: -1.202e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 1046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 2.120441051738762e-4
allele num: 4716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.642e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

MQRankSum
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VQSLOD
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DP
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SIO_000300: 1.68221e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

QD
type: SiteQuality
SIO_000300: 7.86e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

South Asian
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allele frequency: 5.749329244921426e-4
allele num: 5218
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4350
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.192e0

QD
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SIO_000300: 7.23e0

BaseQRankSum
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SIO_000300: -1.089e0

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

DP
type: SiteQuality
SIO_000300: 1.79251e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1114
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 1.85424e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

QD
type: SiteQuality
SIO_000300: 1.343e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.79e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 2
allele frequency: 1.727115716753022e-3
allele num: 1158
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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FS
type: SiteQuality
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DP
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VQSLOD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.139717425431711e-4
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European (Finnish)
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African
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European (Non-Finnish)
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allele frequency: 4.123711340206186e-4
allele num: 4850
num of homozygotes: 0

DP
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InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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FS
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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African
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South Asian
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Latino
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European (Non-Finnish)
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FS
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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European (Non-Finnish)
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Latino
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East Asian
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Other
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European (Finnish)
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 7.290755322251386e-4
allele num: 6858
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

DP
type: SiteQuality
SIO_000300: 2.10767e5

VQSLOD
type: SiteQuality
SIO_000300: -1.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.08e-2

FS
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeQuality
all individuals: 1181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.024291497975709e-3
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.029220779220779e-4
allele num: 4928
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.925687536571094e-4
allele num: 6836
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.11634e5

FS
type: SiteQuality
SIO_000300: 9.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.366e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.64e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

QD
type: SiteQuality
SIO_000300: 1.261e1

GenotypeQuality
all individuals: 1538
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.984126984126984e-4
allele num: 5040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.16e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.1e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.088e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.697e0

FS
type: SiteQuality
SIO_000300: 7.44e-1

DP
type: SiteQuality
SIO_000300: 2.1111e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 986
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.054231717337716e-4
allele num: 4868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

DP
type: SiteQuality
SIO_000300: 2.05746e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 9.07e0

VQSLOD
type: SiteQuality
SIO_000300: -8.102e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 113
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.487666034155598e-4
allele num: 1054
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.565435190983093e-4
allele num: 6388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.99147e5

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 4.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.556e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.38e-2

GenotypeQuality
all individuals: 286
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
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GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 145
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1046
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.678415575696542e-4
allele num: 5958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.193944712593243e-4
allele num: 4558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.87631e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.115e0

FS
type: SiteQuality
SIO_000300: 7.543e0

VQSLOD
type: SiteQuality
SIO_000300: -1.129e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.21e-2

QD
type: SiteQuality
SIO_000300: 9.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.31696014828545e-4
allele num: 4316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e0

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.636e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.32e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.241e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.75507e5

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 985
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GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4808
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.054852320675105e-3
allele num: 948
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.686e0

MQRankSum
type: SiteQuality
SIO_000300: -7.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.47e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

DP
type: SiteQuality
SIO_000300: 1.61277e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.03e-2

DP
type: SiteQuality
SIO_000300: 1.42185e5

VQSLOD
type: SiteQuality
SIO_000300: 3.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.248e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 4.728132387706856e-3
allele num: 846
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South Asian
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allele frequency: 0.0e0
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DP
type: SiteQuality
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QD
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66556
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
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SIO_000300: 3.319585e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Non-Finnish)
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allele count: 12
allele frequency: 1.800072002880115e-4
allele num: 66664
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Other
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QD
type: SiteQuality
SIO_000300: 9.09e0

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.564e0

ClippingRankSum
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BaseQRankSum
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MQ
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -4.0e-4

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 3.319555e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926411096127914e-4
allele num: 10382
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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VQSLOD
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QD
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.320485e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 1.211240310077519e-4
allele num: 16512
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African
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allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
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European (Non-Finnish)
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allele count: 22
allele frequency: 3.299241174529858e-4
allele num: 66682
num of homozygotes: 0

Other
type: Population
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allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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DP
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QD
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ReadPosRankSum
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SIO_000300: 1.1e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
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East Asian
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South Asian
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European (Finnish)
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Latino
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Other
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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South Asian
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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