5-71618051-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618051
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618051
    reference: chr 5
allele count: 1
allele frequency: 8.287338604080686e-6
allele num: 120666
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.180A>G
  hgvsp: ENST00000515198.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.180A>G
  hgvsp: ENST00000503868.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.180A>G
  hgvsp: ENST00000511752.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*625A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.180A>G
  hgvsp: ENST00000543322.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.180A>G
  hgvsp: ENST00000308077.5:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.180A>G
  hgvsp: ENST00000380639.5:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.165A>G
  hgvsp: ENST00000503315.1:c.165A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.220A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-216A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-140A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln60Gln
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

5-71618058-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618058
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618058
    reference: chr 5
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.187G>C
  hgvsp: ENSP00000429665.1:p.Val63Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.187G>C
  hgvsp: ENSP00000427524.1:p.Val63Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.172G>C
  hgvsp: ENSP00000425773.1:p.Val58Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-133G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.187G>C
  hgvsp: ENSP00000370013.4:p.Val63Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.227G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.187G>C
  hgvsp: ENSP00000438810.1:p.Val63Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.187G>C
  hgvsp: ENSP00000427349.1:p.Val63Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.187G>C
  hgvsp: ENSP00000308948.5:p.Val63Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-209G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*632G>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val63Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

5-71618060-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618060
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618060
    reference: chr 5
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.189G>A
  hgvsp: ENST00000308077.5:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.189G>A
  hgvsp: ENST00000515198.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.174G>A
  hgvsp: ENST00000503315.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-131G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.189G>A
  hgvsp: ENST00000380639.5:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.229G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-207G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.189G>A
  hgvsp: ENST00000511752.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.189G>A
  hgvsp: ENST00000543322.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.189G>A
  hgvsp: ENST00000503868.1:c.189G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*634G>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val63Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

5-71618062-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618062
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618061
    reference: chr 5
allele count: 2
allele frequency: 1.66198540776812e-5
allele num: 120338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.192delT
  hgvsp: ENSP00000438810.1:p.Val65LeufsTer16
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.192delT
  hgvsp: ENSP00000429665.1:p.Val65LeufsTer23
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.192delT
  hgvsp: ENSP00000370013.4:p.Val65LeufsTer16
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-204delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*637delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.192delT
  hgvsp: ENSP00000308948.5:p.Val65LeufsTer16
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-128delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.192delT
  hgvsp: ENSP00000427349.1:p.Val65LeufsTer15
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.232delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.177delT
  hgvsp: ENSP00000425773.1:p.Val60LeufsTer16
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.192delT
  hgvsp: ENSP00000427524.1:p.Val65LeufsTer16
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2662
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val65LeufsTer16
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: CT
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

5-71618065-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618065
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618065
    reference: chr 5
allele count: 316
allele frequency: 2.672485242130546e-3
allele num: 118242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.194T>G
  hgvsp: ENSP00000427524.1:p.Val65Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.194T>G
  hgvsp: ENSP00000429665.1:p.Val65Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.194T>G
  hgvsp: ENSP00000438810.1:p.Val65Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.194T>G
  hgvsp: ENSP00000427349.1:p.Val65Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.194T>G
  hgvsp: ENSP00000308948.5:p.Val65Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.194T>G
  hgvsp: ENSP00000370013.4:p.Val65Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.234T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-126T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.179T>G
  hgvsp: ENSP00000425773.1:p.Val60Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*639T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-202T>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 9.75e1
  variant carriers: 278
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Val65Gly
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

5-71618068-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618068
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618068
    reference: chr 5
allele count: 3
allele frequency: 2.486778626966628e-5
allele num: 120638
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.197C>G
  hgvsp: ENSP00000427524.1:p.Ala66Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.197C>G
  hgvsp: ENSP00000429665.1:p.Ala66Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.197C>G
  hgvsp: ENSP00000370013.4:p.Ala66Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-199C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*642C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.182C>G
  hgvsp: ENSP00000425773.1:p.Ala61Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-123C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.197C>G
  hgvsp: ENSP00000427349.1:p.Ala66Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.197C>G
  hgvsp: ENSP00000438810.1:p.Ala66Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.197C>G
  hgvsp: ENSP00000308948.5:p.Ala66Gly
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.237C>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala66Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

5-71618073-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618073
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618073
    reference: chr 5
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.187A>G
  hgvsp: ENSP00000425773.1:p.Asn63Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.202A>G
  hgvsp: ENSP00000370013.4:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.202A>G
  hgvsp: ENSP00000427524.1:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.202A>G
  hgvsp: ENSP00000308948.5:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-118A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.202A>G
  hgvsp: ENSP00000429665.1:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-194A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.202A>G
  hgvsp: ENSP00000438810.1:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*647A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.242A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.202A>G
  hgvsp: ENSP00000427349.1:p.Asn68Asp
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn68Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

5-71618091-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618091
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618091
    reference: chr 5
allele count: 1
allele frequency: 8.288025460814215e-6
allele num: 120656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220G>T
  hgvsp: ENSP00000427524.1:p.Glu74Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220G>T
  hgvsp: ENSP00000438810.1:p.Glu74Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220G>T
  hgvsp: ENSP00000429665.1:p.Gly74Cys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220G>T
  hgvsp: ENSP00000370013.4:p.Glu74Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205G>T
  hgvsp: ENSP00000425773.1:p.Glu69Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220G>T
  hgvsp: ENSP00000427349.1:p.Gly74Cys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220G>T
  hgvsp: ENSP00000308948.5:p.Glu74Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665G>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu74Ter
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/5-71618095-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618095
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618095
    reference: chr 5
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+4A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+4A>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.220+4A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-71618097-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618097
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618097
    reference: chr 5
allele count: 41
allele frequency: 3.398259428097804e-4
allele num: 120650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+6A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+6A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6612
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.220+6A>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-71618104-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618104
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618104
    reference: chr 5
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+13A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+13A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

5-71618109-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618109
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618109
    reference: chr 5
allele count: 1
allele frequency: 8.289674381590291e-6
allele num: 120632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+18G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+18G>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

5-71618113-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618113
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618113
    reference: chr 5
allele count: 2
allele frequency: 1.65812731101494e-5
allele num: 120618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+22A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6617
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD

5-71618114-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618114
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618114
    reference: chr 5
allele count: 5
allele frequency: 4.146487096132157e-5
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+23T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+23T>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

5-71618122-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618122
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618122
    reference: chr 5
allele count: 17
allele frequency: 1.410250029034559e-4
allele num: 120546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+31T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+31T>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7928
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3389
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

5-71618125-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618125
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618125
    reference: chr 5
allele count: 1
allele frequency: 8.292699107705576e-6
allele num: 120588
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+34A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+34A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7815
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

5-71618142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618142
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618142
    reference: chr 5
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+51C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+51C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5064
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-71618143-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71618143
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71618143
    reference: chr 5
allele count: 1
allele frequency: 8.30937463646486e-6
allele num: 120346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-100+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.205+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-176+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*665+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.220+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.220+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.220+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+52T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.220+52T>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-71622389-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622389
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622389
    reference: chr 5
allele count: 1
allele frequency: 8.392077878482712e-6
allele num: 119160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4298A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-99-50A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*666-50A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.221-50A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.221-50A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-175-50A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4298A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.221-50A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.206-50A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4298A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.221-50A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

5-71622402-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622402
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622402
    reference: chr 5
allele count: 1
allele frequency: 8.381386616601851e-6
allele num: 119312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-175-37G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4311G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.221-37G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.206-37G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-99-37G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4311G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*666-37G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.221-37G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4311G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.221-37G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.221-37G>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4880
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

5-71622411-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622411
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622411
    reference: chr 5
allele count: 5
allele frequency: 4.184380544304221e-5
allele num: 119492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4320A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-99-28A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4320A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4320A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.221-28A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-175-28A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.206-28A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.221-28A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.221-28A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*666-28A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.221-28A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

5-71622417-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622417
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622417
    reference: chr 5
allele count: 3
allele frequency: 2.506935855867901e-5
allele num: 119668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.206-22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.221-22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*666-22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4326A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.221-22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.221-22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-175-22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-99-22A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4326A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4326A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.221-22A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-71622421-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622421
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622421
    reference: chr 5
allele count: 2
allele frequency: 1.669198284064164e-5
allele num: 119818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*666-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.221-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.206-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.221-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-99-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.221-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4330T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.221-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-175-18T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4330T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4330T>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

5-71622422-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622422
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622422
    reference: chr 5
allele count: 1
allele frequency: 8.34306691139663e-6
allele num: 119860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-99-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.206-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.221-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4331A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.221-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*666-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.221-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-175-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4331A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.221-17A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4331A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

5-71622432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622432
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622432
    reference: chr 5
allele count: 2
allele frequency: 1.663644379377464e-5
allele num: 120218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4341C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4341C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.221-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.221-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-99-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.206-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-175-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*666-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4341C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.221-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.221-7C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.221-7C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

5-71622442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622442
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622442
    reference: chr 5
allele count: 5
allele frequency: 4.149721968628102e-5
allele num: 120490
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.224C>T
  hgvsp: ENSP00000370013.4:p.Thr75Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4351C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.209C>T
  hgvsp: ENSP00000425773.1:p.Thr70Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.224C>T
  hgvsp: ENSP00000427524.1:p.Thr75Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*669C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.224C>T
  hgvsp: ENSP00000438810.1:p.Thr75Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4351C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.224C>T
  hgvsp: ENSP00000308948.5:p.Thr75Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-172C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4351C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-96C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr75Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP

5-71622443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622443
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622443
    reference: chr 5
allele count: 3
allele frequency: 2.489213408562894e-5
allele num: 120520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*670G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-171G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.225G>A
  hgvsp: ENST00000543322.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4352G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.225G>A
  hgvsp: ENST00000515198.1:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.225G>A
  hgvsp: ENST00000308077.5:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4352G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-95G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.210G>A
  hgvsp: ENST00000503315.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4352G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.225G>A
  hgvsp: ENST00000380639.5:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr75Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

5-71622449-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622449
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622449
    reference: chr 5
allele count: 2
allele frequency: 1.658512314453935e-5
allele num: 120590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-89T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.216T>C
  hgvsp: ENST00000503315.1:c.216T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*676T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.231T>C
  hgvsp: ENST00000380639.5:c.231T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-165T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4358T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.231T>C
  hgvsp: ENST00000543322.1:c.231T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.231T>C
  hgvsp: ENST00000308077.5:c.231T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4358T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.231T>C
  hgvsp: ENST00000515198.1:c.231T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4358T>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe77Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

5-71622457-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622457
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622457
    reference: chr 5
allele count: 1
allele frequency: 8.287201246395068e-6
allele num: 120668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.239T>G
  hgvsp: ENSP00000308948.5:p.Leu80Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*684T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4366T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.224T>G
  hgvsp: ENSP00000425773.1:p.Leu75Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4366T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4366T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.239T>G
  hgvsp: ENSP00000438810.1:p.Leu80Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-81T>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.239T>G
  hgvsp: ENSP00000370013.4:p.Leu80Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.239T>G
  hgvsp: ENSP00000427524.1:p.Leu80Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-157T>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu80Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-71622461-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622461
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622461
    reference: chr 5
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.243A>G
  hgvsp: ENST00000543322.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.243A>G
  hgvsp: ENST00000308077.5:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.243A>G
  hgvsp: ENST00000380639.5:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.228A>G
  hgvsp: ENST00000503315.1:c.228A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*688A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4370A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-77A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-153A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.243A>G
  hgvsp: ENST00000515198.1:c.243A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4370A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4370A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys81Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-71622463-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622463
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622463
    reference: chr 5
allele count: 1
allele frequency: 8.284866862189524e-6
allele num: 120702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.230A>T
  hgvsp: ENSP00000425773.1:p.Lys77Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4372A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.245A>T
  hgvsp: ENSP00000427524.1:p.Lys82Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.245A>T
  hgvsp: ENSP00000308948.5:p.Lys82Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.245A>T
  hgvsp: ENSP00000438810.1:p.Lys82Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-75A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.245A>T
  hgvsp: ENSP00000370013.4:p.Lys82Met
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-151A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*690A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4372A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4372A>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys82Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

5-71622468-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622468
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622468
    reference: chr 5
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-70C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.235C>G
  hgvsp: ENSP00000425773.1:p.Leu79Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.250C>G
  hgvsp: ENSP00000308948.5:p.Leu84Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4377C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4377C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.250C>G
  hgvsp: ENSP00000438810.1:p.Leu84Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.250C>G
  hgvsp: ENSP00000370013.4:p.Leu84Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.250C>G
  hgvsp: ENSP00000427524.1:p.Leu84Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4377C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*695C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-146C>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu84Val
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

5-71622479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622479
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622479
    reference: chr 5
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.246C>T
  hgvsp: ENST00000503315.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.261C>T
  hgvsp: ENST00000543322.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.261C>T
  hgvsp: ENST00000380639.5:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.261C>T
  hgvsp: ENST00000308077.5:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.261C>T
  hgvsp: ENST00000515198.1:c.261C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4388C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-59C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4388C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-135C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4388C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*706C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn87Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

5-71622488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622488
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622488
    reference: chr 5
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.255C>T
  hgvsp: ENST00000503315.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.270C>T
  hgvsp: ENST00000308077.5:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4397C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.270C>T
  hgvsp: ENST00000543322.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4397C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4397C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*715C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.270C>T
  hgvsp: ENST00000380639.5:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-126C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.270C>T
  hgvsp: ENST00000515198.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-50C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile90Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-71622494-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622494
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622494
    reference: chr 5
allele count: 2
allele frequency: 1.656451880072884e-5
allele num: 120740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.276G>C
  hgvsp: ENSP00000427524.1:p.Lys92Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.261G>C
  hgvsp: ENSP00000425773.1:p.Lys87Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.276G>C
  hgvsp: ENSP00000308948.5:p.Lys92Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-44G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4403G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4403G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-120G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*721G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4403G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.276G>C
  hgvsp: ENSP00000438810.1:p.Lys92Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.276G>C
  hgvsp: ENSP00000370013.4:p.Lys92Asn
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys92Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-71622497-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622497
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622497
    reference: chr 5
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4406G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.279G>C
  hgvsp: ENST00000308077.5:c.279G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4406G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*724G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.279G>C
  hgvsp: ENST00000543322.1:c.279G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.279G>C
  hgvsp: ENST00000380639.5:c.279G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.279G>C
  hgvsp: ENST00000515198.1:c.279G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.264G>C
  hgvsp: ENST00000503315.1:c.264G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4406G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-117G>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly93Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-71622503-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622503
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622503
    reference: chr 5
allele count: 2
allele frequency: 1.656397005234214e-5
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.285G>A
  hgvsp: ENST00000380639.5:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4412G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4412G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*730G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.285G>A
  hgvsp: ENST00000543322.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.285G>A
  hgvsp: ENST00000308077.5:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.285G>A
  hgvsp: ENST00000515198.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-111G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.270G>A
  hgvsp: ENST00000503315.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4412G>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu95Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

5-71622511-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622511
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622511
    reference: chr 5
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4420T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.293T>C
  hgvsp: ENSP00000438810.1:p.Leu98Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4420T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-27T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4420T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-103T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.293T>C
  hgvsp: ENSP00000427524.1:p.Leu98Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.293T>C
  hgvsp: ENSP00000370013.4:p.Leu98Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.293T>C
  hgvsp: ENSP00000308948.5:p.Leu98Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*738T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.278T>C
  hgvsp: ENSP00000425773.1:p.Leu93Ser
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu98Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

5-71622515-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622515
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622515
    reference: chr 5
allele count: 2
allele frequency: 1.656506758547575e-5
allele num: 120736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.282A>G
  hgvsp: ENST00000503315.1:c.282A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-99A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.297A>G
  hgvsp: ENST00000515198.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.297A>G
  hgvsp: ENST00000308077.5:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4424A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.297A>G
  hgvsp: ENST00000543322.1:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4424A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4424A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*742A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-23A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.297A>G
  hgvsp: ENST00000380639.5:c.297A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu99Leu
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

5-71622529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622529
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622529
    reference: chr 5
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.311C>T
  hgvsp: ENSP00000438810.1:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-9C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.311C>T
  hgvsp: ENSP00000370013.4:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4438C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.296C>T
  hgvsp: ENSP00000425773.1:p.Ser99Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4438C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.311C>T
  hgvsp: ENSP00000427524.1:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4438C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*756C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.311C>T
  hgvsp: ENSP00000308948.5:p.Ser104Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-85C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2775
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser104Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-71622531-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622531
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622531
    reference: chr 5
allele count: 30
allele frequency: 2.485830764641543e-4
allele num: 120684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*758C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.313C>T
  hgvsp: ENSP00000308948.5:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.313C>T
  hgvsp: ENSP00000427524.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4440C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.313C>T
  hgvsp: ENSP00000370013.4:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4440C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.313C>T
  hgvsp: ENSP00000438810.1:p.Arg105Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4440C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.298C>T
  hgvsp: ENSP00000425773.1:p.Arg100Trp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-83C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 9.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg105Trp
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-71622532-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622532
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622532
    reference: chr 5
allele count: 2
allele frequency: 1.657577616071872e-5
allele num: 120658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.-6G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4441G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-82G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.314G>T
  hgvsp: ENSP00000427524.1:p.Arg105Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.314G>T
  hgvsp: ENSP00000370013.4:p.Arg105Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4441G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.314G>T
  hgvsp: ENSP00000308948.5:p.Arg105Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.299G>T
  hgvsp: ENSP00000425773.1:p.Arg100Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.314G>T
  hgvsp: ENSP00000438810.1:p.Arg105Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*759G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4441G>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3333
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg105Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-71622537-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622537
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622536
    reference: chr 5
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.1delA
  hgvsp: ENSP00000444772.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.320delA
  hgvsp: ENSP00000438810.1:p.His107LeufsTer31
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.305delA
  hgvsp: ENSP00000425773.1:p.His102LeufsTer217
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.320delA
  hgvsp: ENSP00000427524.1:p.His107LeufsTer31
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.320delA
  hgvsp: ENSP00000370013.4:p.His107LeufsTer31
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4447delA
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.320delA
  hgvsp: ENSP00000308948.5:p.His107LeufsTer31
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*765delA
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4447delA
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4447delA
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-76delA
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.His107LeufsTer31
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: CA
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

5-71622543-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622543
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622543
    reference: chr 5
allele count: 1
allele frequency: 8.294212298657997e-6
allele num: 120566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*770G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-71G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4452G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.325G>A
  hgvsp: ENSP00000308948.5:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.310G>A
  hgvsp: ENSP00000425773.1:p.Glu104Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4452G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.6G>A
  hgvsp: ENSP00000444772.1:p.Trp2Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.325G>A
  hgvsp: ENSP00000438810.1:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4452G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.325G>A
  hgvsp: ENSP00000427524.1:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.325G>A
  hgvsp: ENSP00000370013.4:p.Glu109Lys
  variant of: http://identifiers.org/hgnc/25734
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4566
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp2Ter
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-71622549-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622549
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622549
    reference: chr 5
allele count: 1
allele frequency: 8.298617450332775e-6
allele num: 120502
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.331G>T
  hgvsp: ENSP00000308948.5:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4458G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*776G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.12G>T
  hgvsp: ENSP00000444772.1:p.Trp4Cys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4458G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.331G>T
  hgvsp: ENSP00000370013.4:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.331G>T
  hgvsp: ENSP00000438810.1:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.331G>T
  hgvsp: ENSP00000427524.1:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-65G>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.316G>T
  hgvsp: ENSP00000425773.1:p.Ala106Ser
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4458G>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala111Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

5-71622561-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622561
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622561
    reference: chr 5
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4470A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.343A>T
  hgvsp: ENSP00000370013.4:p.Ile115Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.343A>T
  hgvsp: ENSP00000427524.1:p.Ile115Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.328A>T
  hgvsp: ENSP00000425773.1:p.Ile110Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.343A>T
  hgvsp: ENSP00000308948.5:p.Ile115Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.343A>T
  hgvsp: ENSP00000438810.1:p.Ile115Phe
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-53A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4470A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*788A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.24A>T
  hgvsp: ENST00000536805.1:c.24A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4470A>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile115Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

5-71622572-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622572
    reference: chr 5
allele count: 1
allele frequency: 8.335834083558401e-6
allele num: 119964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.350+4A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4481A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+4A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+4A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-46+4A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.350+4A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4481A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.350+4A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4481A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*795+4A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.350+4A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.350+4A>G
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

5-71622576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622576
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622576
    reference: chr 5
allele count: 1
allele frequency: 8.352404657300837e-6
allele num: 119726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.350+8A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.350+8A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.350+8A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.260+4485A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*795+8A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+8A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-46+8A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.220+4485A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+8A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4485A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.350+8A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5228
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.350+8A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

5-71622589-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622589
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622588
    reference: chr 5
allele count: 4
allele frequency: 3.354635267280565e-5
allele num: 119238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*795+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.350+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.350+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-46+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-4494delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.350+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.350+23delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4500delT
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-4494delT
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: GT
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

5-71622603-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622603
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622603
    reference: chr 5
allele count: 2
allele frequency: 1.687934643170616e-5
allele num: 118488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+35C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-46+35C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-4482C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+35C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.350+35C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.350+35C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4512C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-4482C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*795+35C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.350+35C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.350+35C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

5-71622616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622616
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622616
    reference: chr 5
allele count: 1
allele frequency: 8.506873553831496e-6
allele num: 117552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4525G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+48G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*795+48G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+48G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.350+48G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-46+48G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-4469G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-4469G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.350+48G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.350+48G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.350+48G>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3308
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4876
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4565
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-71622619-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71622619
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71622619
    reference: chr 5
allele count: 5
allele frequency: 4.262647274463332e-5
allele num: 117298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+51C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-4466C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.350+51C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-4466C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*795+51C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-46+51C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+51C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.350+51C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.350+51C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.220+4528C>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.350+51C>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2780
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5226
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

5-71627038-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627038
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627038
    reference: chr 5
allele count: 1
allele frequency: 8.256274768824306e-6
allele num: 121120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4583T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.351-47T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-47T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.351-47T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3807T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-47T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.351-47T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+4470T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.351-47T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+4470T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*796-47T>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

5-71627044-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627044
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627044
    reference: chr 5
allele count: 2
allele frequency: 1.651173158529135e-5
allele num: 121126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.351-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3801G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.351-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+4476G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*796-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.351-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+4476G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.351-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-41G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4577G>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33195
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP

5-71627045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627045
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627045
    reference: chr 5
allele count: 1
allele frequency: 8.255729476256522e-6
allele num: 121128
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+4477T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.351-40T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*796-40T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4576T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.351-40T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.351-40T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.351-40T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-40T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-40T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3800T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+4477T>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

5-71627065-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627065
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627064
    reference: chr 5
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.351-19delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.351-19delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+4498delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*796-19delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.351-19delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-19delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-19delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+4498delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4555delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3779delG
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.351-19delG
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: TG
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

5-71627075-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627075
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627075
    reference: chr 5
allele count: 2
allele frequency: 1.649185302460584e-5
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-10T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3770T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.351-10T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+4507T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.351-10T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.351-10T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4546T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*796-10T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-10T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+4507T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.351-10T>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33194
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-71627083-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627083
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627083
    reference: chr 5
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.351-2A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*796-2A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3762A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.31+4515A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.335+4515A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.351-2A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.351-2A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.351-2A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.261-2A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.221-2A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4538A>G
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33194
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.351-2A>G
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-71627096-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627096
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627096
    reference: chr 5
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.232A>T
  hgvsp: ENSP00000429665.1:p.Arg78Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.362A>T
  hgvsp: ENSP00000370013.4:p.Glu121Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4525A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.362A>T
  hgvsp: ENSP00000308948.5:p.Glu121Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4525A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.272A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.362A>T
  hgvsp: ENSP00000438810.1:p.Glu121Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3749A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.362A>T
  hgvsp: ENSP00000427524.1:p.Glu121Val
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*807A>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4525A>T
  variant of: http://identifiers.org/hgnc/25734
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg78Ter
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

5-71627101-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627101
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627101
    reference: chr 5
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.367A>G
  hgvsp: ENSP00000370013.4:p.Lys123Glu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.277A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*812A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4520A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.367A>G
  hgvsp: ENSP00000308948.5:p.Lys123Glu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.367A>G
  hgvsp: ENSP00000438810.1:p.Lys123Glu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.367A>G
  hgvsp: ENSP00000427524.1:p.Lys123Glu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4520A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4520A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3744A>G
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.237A>G
  hgvsp: ENST00000511752.1:c.237A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys123Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

5-71627106-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627106
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627106
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.372T>A
  hgvsp: ENSP00000308948.5:p.Asn124Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4515T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4515T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3739T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4515T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.372T>A
  hgvsp: ENSP00000438810.1:p.Asn124Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.372T>A
  hgvsp: ENSP00000427524.1:p.Asn124Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.242T>A
  hgvsp: ENSP00000429665.1:p.Ile81Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*817T>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.372T>A
  hgvsp: ENSP00000370013.4:p.Asn124Lys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.282T>A
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn124Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

5-71627116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627116
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627116
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*827G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.382G>A
  hgvsp: ENSP00000427524.1:p.Gly128Arg
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.252G>A
  hgvsp: ENSP00000429665.1:p.Trp84Ter
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.382G>A
  hgvsp: ENSP00000308948.5:p.Gly128Arg
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3729G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4505G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.292G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.382G>A
  hgvsp: ENSP00000438810.1:p.Gly128Arg
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.382G>A
  hgvsp: ENSP00000370013.4:p.Gly128Arg
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4505G>A
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4505G>A
  variant of: http://identifiers.org/hgnc/25734
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp84Ter
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/5-71627120-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627120
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627120
    reference: chr 5
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.386A>C
  hgvsp: ENSP00000370013.4:p.Glu129Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*831A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3725A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4501A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.386A>C
  hgvsp: ENSP00000308948.5:p.Glu129Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4501A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.386A>C
  hgvsp: ENSP00000438810.1:p.Glu129Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.296A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.386A>C
  hgvsp: ENSP00000427524.1:p.Glu129Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.256A>C
  hgvsp: ENSP00000429665.1:p.Ser86Arg
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4501A>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu129Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

5-71627121-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627121
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627121
    reference: chr 5
allele count: 12
allele frequency: 9.883701775771753e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.387G>C
  hgvsp: ENSP00000438810.1:p.Glu129Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.257G>C
  hgvsp: ENSP00000429665.1:p.Ser86Thr
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4500G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4500G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.387G>C
  hgvsp: ENSP00000427524.1:p.Glu129Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4500G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.387G>C
  hgvsp: ENSP00000308948.5:p.Glu129Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.297G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.387G>C
  hgvsp: ENSP00000370013.4:p.Glu129Asp
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3724G>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*832G>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33195
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu129Asp
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/5-71627127-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627127
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627127
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.393A>C
  hgvsp: ENSP00000438810.1:p.Lys131Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4494A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4494A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.263A>C
  hgvsp: ENSP00000429665.1:p.Asn88Thr
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.393A>C
  hgvsp: ENSP00000370013.4:p.Lys131Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.393A>C
  hgvsp: ENSP00000427524.1:p.Lys131Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.303A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*838A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.393A>C
  hgvsp: ENSP00000308948.5:p.Lys131Asn
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4494A>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3718A>C
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33190
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys131Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

5-71627135-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627135
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627135
    reference: chr 5
allele count: 10
allele frequency: 8.23641814647646e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.401C>T
  hgvsp: ENSP00000308948.5:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*846C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4486C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.401C>T
  hgvsp: ENSP00000427524.1:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4486C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.401C>T
  hgvsp: ENSP00000438810.1:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.401C>T
  hgvsp: ENSP00000370013.4:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.271C>T
  hgvsp: ENSP00000429665.1:p.Arg91Cys
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4486C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.311C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3710C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33190
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro134Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

5-71627144-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627144
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627144
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4477T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.410T>C
  hgvsp: ENSP00000370013.4:p.Val137Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.410T>C
  hgvsp: ENSP00000438810.1:p.Val137Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.410T>C
  hgvsp: ENSP00000427524.1:p.Val137Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4477T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.280T>C
  hgvsp: ENSP00000429665.1:p.Ter94ArgextTer16
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.410T>C
  hgvsp: ENSP00000308948.5:p.Val137Ala
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*855T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4477T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.320T>C
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3701T>C
  variant of: http://identifiers.org/hgnc/25734
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33185
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter94ArgextTer16
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-71627157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 71627157
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 71627157
    reference: chr 5
allele count: 6
allele frequency: 4.941850887885876e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000370013
  ensembl transcript: ENST00000380639
  gene symbol: PTCD2
  hgvsc: ENST00000380639.5:c.423C>T
  hgvsp: ENST00000380639.5:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000308948
  ensembl transcript: ENST00000308077
  gene symbol: PTCD2
  hgvsc: ENST00000308077.5:c.423C>T
  hgvsp: ENST00000308077.5:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425606
  ensembl transcript: ENST00000486995
  gene symbol: PTCD2
  hgvsc: ENST00000486995.1:c.*868C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000438810
  ensembl transcript: ENST00000543322
  gene symbol: PTCD2
  hgvsc: ENST00000543322.1:c.423C>T
  hgvsp: ENST00000543322.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049883
  ensembl transcript: ENST00000493283
  gene symbol: PTCD2
  hgvsc: ENST00000493283.1:n.333C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000426295
  ensembl transcript: ENST00000510676
  gene symbol: PTCD2
  hgvsc: ENST00000510676.2:c.-45-3688C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000429665
  ensembl transcript: ENST00000511752
  gene symbol: PTCD2
  hgvsc: ENST00000511752.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427524
  ensembl transcript: ENST00000515198
  gene symbol: PTCD2
  hgvsc: ENST00000515198.1:c.423C>T
  hgvsp: ENST00000515198.1:c.423C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000444772
  ensembl transcript: ENST00000536805
  gene symbol: PTCD2
  hgvsc: ENST00000536805.1:c.32-4464C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000427349
  ensembl transcript: ENST00000503868
  gene symbol: PTCD2
  hgvsc: ENST00000503868.1:c.221-4464C>T
  variant of: http://identifiers.org/hgnc/25734
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049883
  ensembl protein: ENSP00000425773
  ensembl transcript: ENST00000503315
  gene symbol: PTCD2
  hgvsc: ENST00000503315.1:c.336-4464C>T
  variant of: http://identifiers.org/hgnc/25734
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33186
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3472
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr141Tyr
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 562
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3442
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10167
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 2.679058e6

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.45e-1

FS
type: SiteQuality
SIO_000300: 6.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

QD
type: SiteQuality
SIO_000300: 1.028e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.568e0

GenotypeDepth
all individuals: 1953
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7861
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10150
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 2.805e0

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 9.99e0

DP
type: SiteQuality
SIO_000300: 2.679418e6

GenotypeDepth
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2373
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29044
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.874e0

VQSLOD
type: SiteQuality
SIO_000300: -1.858e0

DP
type: SiteQuality
SIO_000300: 2.679392e6

QD
type: SiteQuality
SIO_000300: 1.006e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.375e0

FS
type: SiteQuality
SIO_000300: 8.337e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

MQRankSum
type: SiteQuality
SIO_000300: -1.741e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeDepth
all individuals: 916
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2363
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3655
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10154
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28887
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.008785654110001e-5
allele num: 66472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e0

QD
type: SiteQuality
SIO_000300: 1.482e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.444e0

DP
type: SiteQuality
SIO_000300: 2.705693e6

MQRankSum
type: SiteQuality
SIO_000300: 8.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.01e1

FS
type: SiteQuality
SIO_000300: 3.215e0

GenotypeDepth
all individuals: 7814
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 664
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1052
bin: 2.5e0
variant carriers: 6

GenotypeQuality
all individuals: 3951
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2211
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 27972
bin: 9.75e1
variant carriers: 232

GenotypeQuality
all individuals: 4572
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 9891
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2521
bin: 7.25e1
variant carriers: 9

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3920
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3616
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 84
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 5

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 104
allele frequency: 1.130680582735377e-2
allele num: 9198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 165
allele frequency: 2.533939431168991e-3
allele num: 65116
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 8.009153318077803e-3
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 37
allele frequency: 5.763239875389408e-3
allele num: 6420
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.855e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -4.37e2

FS
type: SiteQuality
SIO_000300: 3.07305e2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.682e0

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 2.789556e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e0

GenotypeDepth
all individuals: 1425
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2960
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4655
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29123
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001110410852015e-5
allele num: 66642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

DP
type: SiteQuality
SIO_000300: 2.720129e6

VQSLOD
type: SiteQuality
SIO_000300: -2.803e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 7.33e0

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.6492e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

GenotypeDepth
all individuals: 1161
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4002
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3966
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4658
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.396e0

FS
type: SiteQuality
SIO_000300: 7.192e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 2.718154e6

VQSLOD
type: SiteQuality
SIO_000300: -1.482e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.901e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

QD
type: SiteQuality
SIO_000300: 1.565e1

GenotypeDepth
all individuals: 952
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 706
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 535
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 584
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4651
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29134
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2548
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3966
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 9.651e0

DP
type: SiteQuality
SIO_000300: 2.717754e6

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.656e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.095e0

QD
type: SiteQuality
SIO_000300: 1.042e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 1885
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1161
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29135
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3966
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.46e-1

DP
type: SiteQuality
SIO_000300: 2.717632e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.26e-2

FS
type: SiteQuality
SIO_000300: 5.056e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 8.51e0

GenotypeDepth
all individuals: 532
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1884
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2965
bin: 9.75e1
variant carriers: 29

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4001
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29148
bin: 9.75e1
variant carriers: 41

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

African
type: Population
allele count: 40
allele frequency: 4.087471898630697e-3
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.459e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.34e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 2.719973e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4004
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 7.172e0

DP
type: SiteQuality
SIO_000300: 2.717232e6

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

QD
type: SiteQuality
SIO_000300: 1.329e1

GenotypeQuality
all individuals: 4003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3969
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29137
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
SIO_000300: 1.016e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.716967e6

MQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.915e0

VQSLOD
type: SiteQuality
SIO_000300: -9.101e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4002
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9907
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29138
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002101471029721e-5
allele num: 66620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.703e0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 2.716454e6

QD
type: SiteQuality
SIO_000300: 1.123e1

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9875
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3999
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29139
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4628
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3966
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.507732964953903e-5
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.236e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

QD
type: SiteQuality
SIO_000300: 1.526e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.051e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

DP
type: SiteQuality
SIO_000300: 2.71673e6

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2525
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4617
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3996
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3656
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3962
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29138
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.636996112134234e-3
allele num: 9774
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

QD
type: SiteQuality
SIO_000300: 1.352e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.6e-2

DP
type: SiteQuality
SIO_000300: 2.715814e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.905e0

GenotypeQuality
all individuals: 2530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29141
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3996
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9557
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.67e-1

DP
type: SiteQuality
SIO_000300: 2.714333e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.85e-1

FS
type: SiteQuality
SIO_000300: 1.8344e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

VQSLOD
type: SiteQuality
SIO_000300: -2.892e0

QD
type: SiteQuality
SIO_000300: 1.026e1

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29125
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 157
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4210
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.402e-1

QD
type: SiteQuality
SIO_000300: 1.168e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.585e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.711353e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3658
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3961
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29132
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1083
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4153
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505162708088744e-5
allele num: 66438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.713256e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.652e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.418e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

QD
type: SiteQuality
SIO_000300: 1.538e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

GenotypeQuality
all individuals: 1131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2462
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.836e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

FS
type: SiteQuality
SIO_000300: 8.872999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.23e0

DP
type: SiteQuality
SIO_000300: 3.675564e6

GenotypeQuality
all individuals: 1029
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 840
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.799e0

FS
type: SiteQuality
SIO_000300: 2.601e0

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

DP
type: SiteQuality
SIO_000300: 3.683327e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.51e-1

GenotypeQuality
all individuals: 47195
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 165
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.532389273877674e-5
allele num: 66380
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

QD
type: SiteQuality
SIO_000300: 1.268e1

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.45e0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

FS
type: SiteQuality
SIO_000300: 5.613e0

DP
type: SiteQuality
SIO_000300: 3.693386e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47199
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66420
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.061224489795918e-4
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.257e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.699061e6

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.127e0

GenotypeQuality
all individuals: 537
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47196
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5599
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728608470181504e-4
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 3.703553e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.72e0

FS
type: SiteQuality
SIO_000300: 3.539e0

QD
type: SiteQuality
SIO_000300: 1.492e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.77e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.65e0

QD
type: SiteQuality
SIO_000300: 9.09e0

FS
type: SiteQuality
SIO_000300: 7.168e0

VQSLOD
type: SiteQuality
SIO_000300: -1.028e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.97e-1

DP
type: SiteQuality
SIO_000300: 3.704712e6

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

GenotypeDepth
all individuals: 2472
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47195
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6458
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.982e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 3.115e1

FS
type: SiteQuality
SIO_000300: 1.344e0

VQSLOD
type: SiteQuality
SIO_000300: -2.284e0

DP
type: SiteQuality
SIO_000300: 3.713951e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.562e0

GenotypeDepth
all individuals: 4878
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6848
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47195
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 694
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002101471029721e-5
allele num: 66620
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.041232904674423e-4
allele num: 9798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.111722283339445e-5
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.205e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.154e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: -9.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.367e0

FS
type: SiteQuality
SIO_000300: 6.1e-1

DP
type: SiteQuality
SIO_000300: 3.719429e6

GenotypeDepth
all individuals: 5228
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47194
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 1.3405e1

VQSLOD
type: SiteQuality
SIO_000300: -1.617e0

DP
type: SiteQuality
SIO_000300: 3.719718e6

QD
type: SiteQuality
SIO_000300: 1.304e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

GenotypeDepth
all individuals: 5044
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47195
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6991
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000930288389401e-5
allele num: 66646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 3.720512e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.476e1

VQSLOD
type: SiteQuality
SIO_000300: 4.3e-1

GenotypeDepth
all individuals: 4179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 970
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7066
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47194
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.067e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 3.721429e6

QD
type: SiteQuality
SIO_000300: 3.172e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.432e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

GenotypeDepth
all individuals: 1933
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.72177e6

MQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.253e0

FS
type: SiteQuality
SIO_000300: 5.984e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.305e1

MQ
type: SiteQuality
SIO_000300: 5.858e1

GenotypeDepth
all individuals: 4179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e0

QD
type: SiteQuality
SIO_000300: 1.235e1

FS
type: SiteQuality
SIO_000300: 8.855e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.1e-2

DP
type: SiteQuality
SIO_000300: 3.721899e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeDepth
all individuals: 3330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.102e0

QD
type: SiteQuality
SIO_000300: 1.538e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

FS
type: SiteQuality
SIO_000300: 6.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.72209e6

VQSLOD
type: SiteQuality
SIO_000300: -1.11e-2

GenotypeDepth
all individuals: 4879
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.334e1

DP
type: SiteQuality
SIO_000300: 3.722421e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.915e0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.17e-1

FS
type: SiteQuality
SIO_000300: 2.301e0

GenotypeDepth
all individuals: 4567
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.893e0

FS
type: SiteQuality
SIO_000300: 2.113e0

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.958e1

DP
type: SiteQuality
SIO_000300: 3.722431e6

QD
type: SiteQuality
SIO_000300: 1.305e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.74e0

GenotypeDepth
all individuals: 5229
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.04e-1

FS
type: SiteQuality
SIO_000300: 5.47e-1

DP
type: SiteQuality
SIO_000300: 3.722779e6

QD
type: SiteQuality
SIO_000300: 1.265e1

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.974e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

GenotypeDepth
all individuals: 5423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 3.722599e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.167e0

VQSLOD
type: SiteQuality
SIO_000300: -4.676e-1

QD
type: SiteQuality
SIO_000300: 9.48e0

FS
type: SiteQuality
SIO_000300: 1.903e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.196e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

GenotypeDepth
all individuals: 5045
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

DP
type: SiteQuality
SIO_000300: 3.722711e6

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.385e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

QD
type: SiteQuality
SIO_000300: 1.193e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeDepth
all individuals: 5227
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 3.722612e6

MQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.89e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 1.558e0

GenotypeDepth
all individuals: 1389
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7124
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 3.722764e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

FS
type: SiteQuality
SIO_000300: 5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
SIO_000300: 1.224e1

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

GenotypeDepth
all individuals: 5463
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7082
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: -1.863e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

FS
type: SiteQuality
SIO_000300: 7.463e0

DP
type: SiteQuality
SIO_000300: 3.722236e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.53e-1

QD
type: SiteQuality
SIO_000300: 1.26e0

GenotypeDepth
all individuals: 1388
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.198152812762384e-4
allele num: 66696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 3.726759e6

MQRankSum
type: SiteQuality
SIO_000300: 4.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

QD
type: SiteQuality
SIO_000300: 1.234e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

GenotypeDepth
all individuals: 5462
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47193
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.215362177929023e-4
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66688
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

FS
type: SiteQuality
SIO_000300: 7.393300000000001e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.185e0

DP
type: SiteQuality
SIO_000300: 3.721388e6

QD
type: SiteQuality
SIO_000300: 4.68e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeDepth
all individuals: 5228
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4878
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.74e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

MQ
type: SiteQuality
SIO_000300: 6.023e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-2

DP
type: SiteQuality
SIO_000300: 3.721317e6

FS
type: SiteQuality
SIO_000300: 4.207e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e0

GenotypeDepth
all individuals: 5228
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 976
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.458e0

DP
type: SiteQuality
SIO_000300: 3.720393e6

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-2

QD
type: SiteQuality
SIO_000300: 1.358e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 2.096e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeDepth
all individuals: 2475
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47192
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.138e1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.303e0

FS
type: SiteQuality
SIO_000300: 6.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 3.719604e6

GenotypeDepth
all individuals: 2472
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6439
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 3.714793e6

MQRankSum
type: SiteQuality
SIO_000300: 8.32e-1

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.272e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

GenotypeDepth
all individuals: 3332
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47191
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5763
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504438092372499e-5
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.44e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 1.1558e1

QD
type: SiteQuality
SIO_000300: 1.231e1

VQSLOD
type: SiteQuality
SIO_000300: -1.295e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 3.70678e6

GenotypeDepth
all individuals: 4565
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5165
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47190
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.267e1

FS
type: SiteQuality
SIO_000300: 2.468e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.62e-1

DP
type: SiteQuality
SIO_000300: 3.700525e6

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47188
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.036824630244491e-5
allele num: 66260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.62e-1

DP
type: SiteQuality
SIO_000300: 3.682916e6

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

QD
type: SiteQuality
SIO_000300: 1.427e1

MQ
type: SiteQuality
SIO_000300: 6.041e1

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47183
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2199
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1308
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15000
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028284174186906e-5
allele num: 66044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 3.55e0

DP
type: SiteQuality
SIO_000300: 3.662651e6

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.596e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

GenotypeQuality
all individuals: 1159
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47177
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 313
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519618271890101e-5
allele num: 65806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14362
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.652593e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.514e0

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.749e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.592e1

GenotypeQuality
all individuals: 688
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47178
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.609191903819814e-5
allele num: 65710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.518e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

DP
type: SiteQuality
SIO_000300: 3.652133e6

QD
type: SiteQuality
SIO_000300: 1.68e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 166
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54540
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

DP
type: SiteQuality
SIO_000300: 6.024456e6

QD
type: SiteQuality
SIO_000300: 7.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.278e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

FS
type: SiteQuality
SIO_000300: 4.607e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.54e-1

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54542
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999850007499625e-5
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.77e-1

QD
type: SiteQuality
SIO_000300: 1.49e1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 4.008e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 9.72e-1

DP
type: SiteQuality
SIO_000300: 6.027231e6

GenotypeQuality
all individuals: 54544
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.135e1

FS
type: SiteQuality
SIO_000300: 1.857e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 6.027577e6

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54547
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-1

MQ
type: SiteQuality
SIO_000300: 5.992e1

QD
type: SiteQuality
SIO_000300: 1.293e1

FS
type: SiteQuality
SIO_000300: 1.0163e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 6.035202e6

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54548
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998590662388677e-5
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 5.37e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.14e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 6.036841e6

MQ
type: SiteQuality
SIO_000300: 5.994e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54549
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.29e-1

DP
type: SiteQuality
SIO_000300: 6.037846e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.555e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 1.351e1

GenotypeDepth
all individuals: 3707
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.248e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

QD
type: SiteQuality
SIO_000300: 1.567e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.038645e6

MQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.77e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeDepth
all individuals: 2229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 550
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.94e0

VQSLOD
type: SiteQuality
SIO_000300: -7.047e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 1.488e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.756e0

DP
type: SiteQuality
SIO_000300: 6.038781e6

MQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

QD
type: SiteQuality
SIO_000300: 1.309e1

GenotypeDepth
all individuals: 3707
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.355e1

VQSLOD
type: SiteQuality
SIO_000300: -1.463e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 4.242e0

MQRankSum
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

DP
type: SiteQuality
SIO_000300: 6.038723e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.891e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeDepth
all individuals: 33193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 549
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.505e1

VQSLOD
type: SiteQuality
SIO_000300: -5.783e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.901e0

MQRankSum
type: SiteQuality
SIO_000300: -1.849e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.583e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 6.03886e6

MQ
type: SiteQuality
SIO_000300: 5.987e1

GenotypeDepth
all individuals: 711
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
SIO_000300: 1.502e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 6.038885e6

VQSLOD
type: SiteQuality
SIO_000300: 2.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.642e0

GenotypeDepth
all individuals: 711
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54552
bin: 9.75e1
variant carriers: 12

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.267441860465116e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.443e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.99e-1

DP
type: SiteQuality
SIO_000300: 6.039592e6

FS
type: SiteQuality
SIO_000300: 1.095e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

GenotypeDepth
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.038744e6

MQ
type: SiteQuality
SIO_000300: 5.896e1

MQRankSum
type: SiteQuality
SIO_000300: 3.57e0

VQSLOD
type: SiteQuality
SIO_000300: -2.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.218e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.91e0

GenotypeDepth
all individuals: 1864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.039981511439797e-3
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.91e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 6.039467e6

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

FS
type: SiteQuality
SIO_000300: 5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeDepth
all individuals: 2230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.576e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 6.038643e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 7.147e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.31e0

GenotypeDepth
all individuals: 1469
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0