3-33907865-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907865
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907865
    reference: chr 3
allele count: 19
allele frequency: 1.583465288774065e-4
allele num: 119990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.445A>G
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2455A>G
  hgvsp: ENSP00000307387.3:p.Met819Val
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2470A>G
  hgvsp: ENSP00000411825.2:p.Met824Val
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26357
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met824Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

3-33907882-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907882
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907882
    reference: chr 3
allele count: 2
allele frequency: 1.656259834042764e-5
allele num: 120754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2472T>C
  hgvsp: ENST00000307296.3:c.2472T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.462T>C
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2487T>C
  hgvsp: ENST00000457054.2:c.2487T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 2872
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26357
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 384
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr829Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-33907884-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907884
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907884
    reference: chr 3
allele count: 10
allele frequency: 8.276227364518158e-5
allele num: 120828
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2489C>T
  hgvsp: ENSP00000411825.2:p.Ala830Val
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.464C>T
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2474C>T
  hgvsp: ENSP00000307387.3:p.Ala825Val
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
  all individuals: 5622
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 10
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala830Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-33907885-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907885
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907885
    reference: chr 3
allele count: 2
allele frequency: 1.654451301225948e-5
allele num: 120886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2475G>A
  hgvsp: ENST00000307296.3:c.2475G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2490G>A
  hgvsp: ENST00000457054.2:c.2490G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.465G>A
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14962
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2886
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala830Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/3-33907912-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907912
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907912
    reference: chr 3
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2517A>C
  hgvsp: ENST00000457054.2:c.2517A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2502A>C
  hgvsp: ENST00000307296.3:c.2502A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.492A>C
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro839Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

3-33907912-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907912
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907912
    reference: chr 3
allele count: 1
allele frequency: 8.243207596940122e-6
allele num: 121312
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.492A>G
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2517A>G
  hgvsp: ENST00000457054.2:c.2517A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2502A>G
  hgvsp: ENST00000307296.3:c.2502A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16128
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro839Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

3-33907915-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907915
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907915
    reference: chr 3
allele count: 1666
allele frequency: 1.373205189495722e-2
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.495A>G
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2505A>G
  hgvsp: ENST00000307296.3:c.2505A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2520A>G
  hgvsp: ENST00000457054.2:c.2520A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 5.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 7.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 14702
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 7.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 5603
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 6.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 9.75e1
  variant carriers: 658
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 8.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 4.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 6.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 8.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15760
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2087
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27240
  bin: 9.75e1
  variant carriers: 1549
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro840Pro
num of homozygotes: 113
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-33907920-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907920
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907920
    reference: chr 3
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2510A>G
  hgvsp: ENSP00000307387.3:p.Tyr837Cys
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2525A>G
  hgvsp: ENSP00000411825.2:p.Tyr842Cys
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.500A>G
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15966
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26607
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr842Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

3-33907924-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907924
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907924
    reference: chr 3
allele count: 3
allele frequency: 2.472717681579902e-5
allele num: 121324
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2529C>G
  hgvsp: ENSP00000411825.2:p.His843Gln
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2514C>G
  hgvsp: ENSP00000307387.3:p.His838Gln
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.504C>G
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2761
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2906
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5173
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15976
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26611
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His843Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

3-33907938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907938
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907938
    reference: chr 3
allele count: 4
allele frequency: 3.296848213108268e-5
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2543A>G
  hgvsp: ENSP00000411825.2:p.Gln848Arg
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.518A>G
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2528A>G
  hgvsp: ENSP00000307387.3:p.Gln843Arg
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5804
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26615
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5189
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln848Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-33907944-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907944
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907944
    reference: chr 3
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2534C>G
  hgvsp: ENSP00000307387.3:p.Pro845Arg
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2549C>G
  hgvsp: ENSP00000411825.2:p.Pro850Arg
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.524C>G
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14641
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2763
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15855
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro850Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/3-33907945-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907945
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907945
    reference: chr 3
allele count: 1
allele frequency: 8.242528148233626e-6
allele num: 121322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.525A>C
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2535A>C
  hgvsp: ENST00000307296.3:c.2535A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2550A>C
  hgvsp: ENST00000457054.2:c.2550A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17429
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35477
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro850Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

3-33907945-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907945
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907945
    reference: chr 3
allele count: 37502
allele frequency: 3.091112906150574e-1
allele num: 121322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.525A>G
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2535A>G
  hgvsp: ENST00000307296.3:c.2535A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2550A>G
  hgvsp: ENST00000457054.2:c.2550A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 3.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 4.75e1
  variant carriers: 728
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 8.25e1
  variant carriers: 1575
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 2.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 17429
  bin: 9.75e1
  variant carriers: 17171
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 5.75e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 12213
  bin: 2.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 8.75e1
  variant carriers: 1655
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 7.25e1
  variant carriers: 1250
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 3.75e1
  variant carriers: 567
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 809
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.25e1
  variant carriers: 1780
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 6.75e1
  variant carriers: 1056
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 4.25e1
  variant carriers: 627
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 7.75e1
  variant carriers: 1345
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 6.25e1
  variant carriers: 934
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 9.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 8.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 8.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 6.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 12791
  bin: 6.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 35477
  bin: 9.75e1
  variant carriers: 30927
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 7.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Pro850Pro
num of homozygotes: 6325
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

3-33907946-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907946
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907946
    reference: chr 3
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2551T>A
  hgvsp: ENSP00000411825.2:p.Tyr851Asn
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2536T>A
  hgvsp: ENSP00000307387.3:p.Tyr846Asn
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.526T>A
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1953
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18663
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4133
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr851Asn
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/3-33907949-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907949
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907949
    reference: chr 3
allele count: 2
allele frequency: 1.649076517150396e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2539C>A
  hgvsp: ENSP00000307387.3:p.Pro847Thr
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2554C>A
  hgvsp: ENSP00000411825.2:p.Pro852Thr
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.529C>A
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13079
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18689
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18657
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6361
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3305
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro852Thr
num of homozygotes: 1
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum

3-33907950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907950
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907950
    reference: chr 3
allele count: 7
allele frequency: 5.772338951743246e-5
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2555C>T
  hgvsp: ENSP00000411825.2:p.Pro852Leu
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.530C>T
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2540C>T
  hgvsp: ENSP00000307387.3:p.Pro847Leu
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18692
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4127
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18653
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 6359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro852Leu
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

3-33907951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907951
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907951
    reference: chr 3
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000170248
  ensembl transcript: ENST00000473593
  gene symbol: PDCD6IP
  hgvsc: ENST00000473593.1:n.531G>A
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2556G>A
  hgvsp: ENST00000457054.2:c.2556G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2541G>A
  hgvsp: ENST00000307296.3:c.2541G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13069
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 3.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18645
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro852Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

3-33907979-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907979
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907979
    reference: chr 3
allele count: 4
allele frequency: 3.324965503482902e-5
allele num: 120302
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2584C>G
  hgvsp: ENSP00000411825.2:p.Pro862Ala
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2569C>G
  hgvsp: ENSP00000307387.3:p.Pro857Ala
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4357
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro862Ala
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10394
  num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-33907985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907985
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907985
    reference: chr 3
allele count: 1
allele frequency: 8.343902276216541e-6
allele num: 119848
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2575C>T
  hgvsp: ENSP00000307387.3:p.Pro859Ser
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2590C>T
  hgvsp: ENSP00000411825.2:p.Pro864Ser
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 666
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Pro864Ser
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 15446
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

3-33907989-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907989
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907989
    reference: chr 3
allele count: 1
allele frequency: 8.363301831563101e-6
allele num: 119570
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2594C>G
  hgvsp: ENSP00000411825.2:p.Pro865Arg
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2579C>G
  hgvsp: ENSP00000307387.3:p.Pro860Arg
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3292
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  variant carriers: 0
hgvs: p.Pro865Arg
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6614
  num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-33907993-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33907993
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33907993
    reference: chr 3
allele count: 4
allele frequency: 3.355986240456414e-5
allele num: 119190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2583G>A
  hgvsp: ENST00000307296.3:c.2583G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2598G>A
  hgvsp: ENST00000457054.2:c.2598G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 307
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 18616
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln866Gln
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11558
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

3-33908006-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908006
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908006
    reference: chr 3
allele count: 1
allele frequency: 8.461668641056017e-6
allele num: 118180
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2611C>T
  hgvsp: ENSP00000411825.2:p.Pro871Ser
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2596C>T
  hgvsp: ENSP00000307387.3:p.Pro866Ser
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
  all individuals: 6179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 18612
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro871Ser
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.518695137138171e-5
  allele num: 65846
  num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

3-33908008-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908008
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908008
    reference: chr 3
allele count: 6
allele frequency: 5.082419909532925e-5
allele num: 118054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.2598A>G
  hgvsp: ENST00000307296.3:c.2598A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.2613A>G
  hgvsp: ENST00000457054.2:c.2613A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4285
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro871Pro
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 6
  allele frequency: 9.114385538508278e-5
  allele num: 65830
  num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

3-33908020-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908020
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908020
    reference: chr 3
allele count: 39
allele frequency: 3.333789236134856e-4
allele num: 116984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*3T>C
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*3T>C
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: African
  type: Population
  allele count: 32
  allele frequency: 3.0965744145539e-3
  allele num: 10334
  num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

3-33908022-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908022
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908022
    reference: chr 3
allele count: 2
allele frequency: 1.711976991029241e-5
allele num: 116824
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*5T>C
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*5T>C
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18594
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8620
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-33908028-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908028
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908028
    reference: chr 3
allele count: 2
allele frequency: 1.72259353682905e-5
allele num: 116104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*11C>T
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8612
  num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

3-33908029-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908029
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908029
    reference: chr 3
allele count: 1
allele frequency: 8.61163259330704e-6
allele num: 116122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*12A>G
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*12A>G
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 4.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65328
  num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

3-33908035-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908035
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908035
    reference: chr 3
allele count: 1
allele frequency: 8.662808829134758e-6
allele num: 115436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*18T>A
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*18T>A
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 65182
  num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

3-33908050-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908050
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908050
    reference: chr 3
allele count: 4
allele frequency: 3.508464169809666e-5
allele num: 114010
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*33C>T
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*33C>T
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 11508
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

3-33908059-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908059
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908059
    reference: chr 3
allele count: 1
allele frequency: 8.834702712253733e-6
allele num: 113190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*42A>G
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*42A>G
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7781
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4038
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12665
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5283
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10250
  num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

3-33908066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908066
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908066
    reference: chr 3
allele count: 2
allele frequency: 1.775063902300483e-5
allele num: 112672
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*49C>T
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*49C>T
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18561
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 971
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 4013
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 8566
  num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/3-33908069-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 33908069
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 33908069
    reference: chr 3
allele count: 2
allele frequency: 1.778979577314453e-5
allele num: 112424
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000411825
  ensembl transcript: ENST00000457054
  gene symbol: PDCD6IP
  hgvsc: ENST00000457054.2:c.*52A>C
  variant of: http://identifiers.org/hgnc/8766
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000170248
  ensembl protein: ENSP00000307387
  ensembl transcript: ENST00000307296
  gene symbol: PDCD6IP
  hgvsc: ENST00000307296.3:c.*52A>C
  variant of: http://identifiers.org/hgnc/8766
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7507
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4016
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 815
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 735
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4166
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 18562
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 924
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6610
  num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD

3-35723197-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723197
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723197
    reference: chr 3
allele count: 1
allele frequency: 8.587229072922749e-6
allele num: 116452
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.745A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.-47A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.-38-9A>G
  variant of: http://identifiers.org/hgnc/16968
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

3-35723202-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723202
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723202
    reference: chr 3
allele count: 1
allele frequency: 8.58000858000858e-6
allele num: 116550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.750C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.-38-4C>G
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.-38-4C>G
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/3-35723216-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723216
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723216
    reference: chr 3
allele count: 1
allele frequency: 8.520645524104906e-6
allele num: 117362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.-28C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.764C>A
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

3-35723221-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723221
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723221
    reference: chr 3
allele count: 1
allele frequency: 8.489973341483707e-6
allele num: 117786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.769T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.-23T>A
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

3-35723227-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723227
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723227
    reference: chr 3
allele count: 2
allele frequency: 1.690674240887266e-5
allele num: 118296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.775A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.-17A>T
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

3-35723236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723236
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723236
    reference: chr 3
allele count: 1
allele frequency: 8.379981899239097e-6
allele num: 119332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.784C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ

3-35723237-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723237
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723237
    reference: chr 3
allele count: 67
allele frequency: 5.609698918249104e-4
allele num: 119436
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.-7T>C
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

3-35723259-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723259
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723259
    reference: chr 3
allele count: 1
allele frequency: 8.312966565248474e-6
allele num: 120294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.16G>C
  hgvsp: ENSP00000396324.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.16G>C
  hgvsp: ENSP00000415134.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.16G>C
  hgvsp: ENSP00000410171.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.807G>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.16G>C
  hgvsp: ENSP00000379741.2:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.16G>C
  hgvsp: ENSP00000398598.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.16G>C
  hgvsp: ENSP00000389754.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.16G>C
  hgvsp: ENSP00000406964.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.16G>C
  hgvsp: ENSP00000409331.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.16G>C
  hgvsp: ENSP00000390151.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.16G>C
  hgvsp: ENSP00000414351.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.16G>C
  hgvsp: ENSP00000390169.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.16G>C
  hgvsp: ENSP00000401602.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.16G>C
  hgvsp: ENSP00000405276.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.16G>C
  hgvsp: ENSP00000409808.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.16G>C
  hgvsp: ENSP00000411644.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.16G>C
  hgvsp: ENSP00000397720.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.16G>C
  hgvsp: ENSP00000379742.2:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.16G>C
  hgvsp: ENSP00000417838.1:p.Asp6His
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asp6His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

3-35723262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723262
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723262
    reference: chr 3
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.19C>T
  hgvsp: ENST00000432682.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.19C>T
  hgvsp: ENST00000449196.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.19C>T
  hgvsp: ENST00000444190.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.19C>T
  hgvsp: ENST00000396482.2:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.19C>T
  hgvsp: ENST00000412048.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.19C>T
  hgvsp: ENST00000413378.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.19C>T
  hgvsp: ENST00000417925.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.19C>T
  hgvsp: ENST00000474696.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.19C>T
  hgvsp: ENST00000432450.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.19C>T
  hgvsp: ENST00000428373.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.19C>T
  hgvsp: ENST00000421492.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.19C>T
  hgvsp: ENST00000414496.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.19C>T
  hgvsp: ENST00000396481.2:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.19C>T
  hgvsp: ENST00000438577.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.19C>T
  hgvsp: ENST00000438071.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.19C>T
  hgvsp: ENST00000458225.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.19C>T
  hgvsp: ENST00000450234.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.810C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.19C>T
  hgvsp: ENST00000441454.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu7Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

3-35723277-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723277
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723277
    reference: chr 3
allele count: 3
allele frequency: 2.489585235099832e-5
allele num: 120502
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.34G>A
  hgvsp: ENSP00000401602.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.34G>A
  hgvsp: ENSP00000410171.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.34G>A
  hgvsp: ENSP00000379741.2:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.34G>A
  hgvsp: ENSP00000187397.4:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.34G>A
  hgvsp: ENSP00000390151.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.34G>A
  hgvsp: ENSP00000417838.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.825G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.34G>A
  hgvsp: ENSP00000413005.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.34G>A
  hgvsp: ENSP00000411644.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.34G>A
  hgvsp: ENSP00000409808.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.34G>A
  hgvsp: ENSP00000412341.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.34G>A
  hgvsp: ENSP00000396324.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.34G>A
  hgvsp: ENSP00000405276.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.34G>A
  hgvsp: ENSP00000415134.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.34G>A
  hgvsp: ENSP00000406964.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.34G>A
  hgvsp: ENSP00000337792.5:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.34G>A
  hgvsp: ENSP00000412411.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.34G>A
  hgvsp: ENSP00000389754.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.34G>A
  hgvsp: ENSP00000414351.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala12Thr
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-35723279-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723279
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723279
    reference: chr 3
allele count: 1
allele frequency: 8.298479718515568e-6
allele num: 120504
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.36A>G
  hgvsp: ENST00000474696.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.36A>G
  hgvsp: ENST00000441454.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.36A>G
  hgvsp: ENST00000417925.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.36A>G
  hgvsp: ENST00000396481.2:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.36A>G
  hgvsp: ENST00000337271.5:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.36A>G
  hgvsp: ENST00000438577.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.36A>G
  hgvsp: ENST00000458225.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.36A>G
  hgvsp: ENST00000450234.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.36A>G
  hgvsp: ENST00000428373.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.36A>G
  hgvsp: ENST00000412048.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.36A>G
  hgvsp: ENST00000432450.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.36A>G
  hgvsp: ENST00000436702.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.36A>G
  hgvsp: ENST00000187397.4:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.36A>G
  hgvsp: ENST00000438071.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.36A>G
  hgvsp: ENST00000414496.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.827A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.36A>G
  hgvsp: ENST00000432682.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.36A>G
  hgvsp: ENST00000449196.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.36A>G
  hgvsp: ENST00000421492.1:c.36A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala12Ala
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

3-35723305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723305
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723305
    reference: chr 3
allele count: 42
allele frequency: 3.479759399492949e-4
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.62C>T
  hgvsp: ENSP00000412326.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.62C>T
  hgvsp: ENSP00000390169.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.62C>T
  hgvsp: ENSP00000409808.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.62C>T
  hgvsp: ENSP00000405276.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.62C>T
  hgvsp: ENSP00000398598.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.62C>T
  hgvsp: ENSP00000389754.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.62C>T
  hgvsp: ENSP00000406964.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.62C>T
  hgvsp: ENSP00000411644.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.62C>T
  hgvsp: ENSP00000337792.5:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.62C>T
  hgvsp: ENSP00000401602.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.62C>T
  hgvsp: ENSP00000390151.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.62C>T
  hgvsp: ENSP00000414351.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.62C>T
  hgvsp: ENSP00000379741.2:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.62C>T
  hgvsp: ENSP00000412411.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.62C>T
  hgvsp: ENSP00000410171.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.62C>T
  hgvsp: ENSP00000412341.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.62C>T
  hgvsp: ENSP00000409331.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.62C>T
  hgvsp: ENSP00000415134.1:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.62C>T
  hgvsp: ENSP00000187397.4:p.Thr21Met
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr21Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

3-35723306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723306
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723306
    reference: chr 3
allele count: 3
allele frequency: 2.484883624616914e-5
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.63G>A
  hgvsp: ENST00000427542.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.63G>A
  hgvsp: ENST00000419330.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.63G>A
  hgvsp: ENST00000396481.2:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.63G>A
  hgvsp: ENST00000412048.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.63G>A
  hgvsp: ENST00000438071.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.63G>A
  hgvsp: ENST00000452563.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.63G>A
  hgvsp: ENST00000428373.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.63G>A
  hgvsp: ENST00000417925.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.63G>A
  hgvsp: ENST00000449196.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.63G>A
  hgvsp: ENST00000438577.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.63G>A
  hgvsp: ENST00000432450.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.63G>A
  hgvsp: ENST00000432682.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.63G>A
  hgvsp: ENST00000441454.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.63G>A
  hgvsp: ENST00000413378.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.63G>A
  hgvsp: ENST00000444190.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.63G>A
  hgvsp: ENST00000474696.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.854G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.63G>A
  hgvsp: ENST00000414496.1:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.63G>A
  hgvsp: ENST00000187397.4:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr21Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/3-35723311-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723311
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723311
    reference: chr 3
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.68C>A
  hgvsp: ENSP00000401602.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.68C>A
  hgvsp: ENSP00000406964.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.68C>A
  hgvsp: ENSP00000405276.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.68C>A
  hgvsp: ENSP00000410171.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.68C>A
  hgvsp: ENSP00000396324.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.68C>A
  hgvsp: ENSP00000390151.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.859C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.68C>A
  hgvsp: ENSP00000389754.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.68C>A
  hgvsp: ENSP00000412326.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.68C>A
  hgvsp: ENSP00000413005.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.68C>A
  hgvsp: ENSP00000412411.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.68C>A
  hgvsp: ENSP00000409808.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.68C>A
  hgvsp: ENSP00000398598.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.68C>A
  hgvsp: ENSP00000379741.2:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.68C>A
  hgvsp: ENSP00000379742.2:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.68C>A
  hgvsp: ENSP00000397720.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.68C>A
  hgvsp: ENSP00000412341.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.68C>A
  hgvsp: ENSP00000417838.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.68C>A
  hgvsp: ENSP00000411644.1:p.Thr23Asn
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr23Asn
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

3-35723321-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723321
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723321
    reference: chr 3
allele count: 4
allele frequency: 3.311751751088738e-5
allele num: 120782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.78C>T
  hgvsp: ENST00000432682.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.78C>T
  hgvsp: ENST00000417925.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.78C>T
  hgvsp: ENST00000436702.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.869C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.78C>T
  hgvsp: ENST00000396481.2:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.78C>T
  hgvsp: ENST00000396482.2:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.78C>T
  hgvsp: ENST00000438071.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.78C>T
  hgvsp: ENST00000413378.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.78C>T
  hgvsp: ENST00000428373.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.78C>T
  hgvsp: ENST00000187397.4:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.78C>T
  hgvsp: ENST00000474696.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.78C>T
  hgvsp: ENST00000337271.5:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.78C>T
  hgvsp: ENST00000419330.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.78C>T
  hgvsp: ENST00000421492.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.78C>T
  hgvsp: ENST00000432450.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.78C>T
  hgvsp: ENST00000427542.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.78C>T
  hgvsp: ENST00000452563.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.78C>T
  hgvsp: ENST00000450234.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.78C>T
  hgvsp: ENST00000414496.1:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Asn26Asn
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

3-35723322-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723322
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723322
    reference: chr 3
allele count: 2
allele frequency: 1.655683963045134e-5
allele num: 120796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.79G>A
  hgvsp: ENSP00000379741.2:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000398598
  ensembl transcript: ENST00000421492
  gene symbol: ARPP21
  hgvsc: ENST00000421492.1:c.79G>A
  hgvsp: ENSP00000398598.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.79G>A
  hgvsp: ENSP00000415134.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.79G>A
  hgvsp: ENSP00000390151.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.79G>A
  hgvsp: ENSP00000397720.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.79G>A
  hgvsp: ENSP00000390169.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.79G>A
  hgvsp: ENSP00000410171.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.79G>A
  hgvsp: ENSP00000409808.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.79G>A
  hgvsp: ENSP00000412341.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.79G>A
  hgvsp: ENSP00000405276.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.79G>A
  hgvsp: ENSP00000389754.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.79G>A
  hgvsp: ENSP00000401602.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.79G>A
  hgvsp: ENSP00000337792.5:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.79G>A
  hgvsp: ENSP00000412326.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.79G>A
  hgvsp: ENSP00000412411.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.79G>A
  hgvsp: ENSP00000379742.2:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.79G>A
  hgvsp: ENSP00000413005.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.79G>A
  hgvsp: ENSP00000396324.1:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.79G>A
  hgvsp: ENSP00000187397.4:p.Gly27Ser
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly27Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

3-35723354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723354
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723354
    reference: chr 3
allele count: 19
allele frequency: 1.57331655129012e-4
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.111G>A
  hgvsp: ENST00000444190.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.111G>A
  hgvsp: ENST00000413378.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.111G>A
  hgvsp: ENST00000441454.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.111G>A
  hgvsp: ENST00000450234.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.902G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.111G>A
  hgvsp: ENST00000396481.2:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.111G>A
  hgvsp: ENST00000432682.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.111G>A
  hgvsp: ENST00000427542.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.111G>A
  hgvsp: ENST00000452563.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.111G>A
  hgvsp: ENST00000396482.2:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.111G>A
  hgvsp: ENST00000412048.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.111G>A
  hgvsp: ENST00000428373.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.111G>A
  hgvsp: ENST00000449196.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.111G>A
  hgvsp: ENST00000438071.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.111G>A
  hgvsp: ENST00000432450.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.111G>A
  hgvsp: ENST00000474696.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.111G>A
  hgvsp: ENST00000337271.5:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.111G>A
  hgvsp: ENST00000438577.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.111G>A
  hgvsp: ENST00000419330.1:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu37Glu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-35723357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723357
    reference: chr 3
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.114G>A
  hgvsp: ENST00000474696.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.114G>A
  hgvsp: ENST00000396481.2:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.905G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.114G>A
  hgvsp: ENST00000438577.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.114G>A
  hgvsp: ENST00000449196.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.114G>A
  hgvsp: ENST00000438071.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.114G>A
  hgvsp: ENST00000414496.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.114G>A
  hgvsp: ENST00000427542.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.114G>A
  hgvsp: ENST00000432682.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.114G>A
  hgvsp: ENST00000441454.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.114G>A
  hgvsp: ENST00000412048.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.114G>A
  hgvsp: ENST00000337271.5:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.114G>A
  hgvsp: ENST00000417925.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.114G>A
  hgvsp: ENST00000432450.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.114G>A
  hgvsp: ENST00000413378.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.114G>A
  hgvsp: ENST00000450234.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.114G>A
  hgvsp: ENST00000187397.4:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.114G>A
  hgvsp: ENST00000452563.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.114G>A
  hgvsp: ENST00000428373.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu38Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

3-35723357-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723357
    reference: chr 3
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.114G>T
  hgvsp: ENSP00000417838.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.114G>T
  hgvsp: ENSP00000389754.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.114G>T
  hgvsp: ENSP00000390151.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.114G>T
  hgvsp: ENSP00000379742.2:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.114G>T
  hgvsp: ENSP00000412341.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.114G>T
  hgvsp: ENSP00000414351.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.114G>T
  hgvsp: ENSP00000413005.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.114G>T
  hgvsp: ENSP00000337792.5:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.114G>T
  hgvsp: ENSP00000406964.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.114G>T
  hgvsp: ENSP00000396324.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.114G>T
  hgvsp: ENSP00000410171.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.114G>T
  hgvsp: ENSP00000379741.2:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.114G>T
  hgvsp: ENSP00000397720.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.114G>T
  hgvsp: ENSP00000405276.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.114G>T
  hgvsp: ENSP00000409808.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.114G>T
  hgvsp: ENSP00000411644.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.114G>T
  hgvsp: ENSP00000412411.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.114G>T
  hgvsp: ENSP00000390169.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.114G>T
  hgvsp: ENSP00000401602.1:p.Glu38Asp
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu38Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

3-35723367-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723367
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723367
    reference: chr 3
allele count: 3
allele frequency: 2.485295335929086e-5
allele num: 120710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.124C>G
  hgvsp: ENSP00000405276.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.124C>G
  hgvsp: ENSP00000409808.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.124C>G
  hgvsp: ENSP00000415134.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.124C>G
  hgvsp: ENSP00000396324.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.124C>G
  hgvsp: ENSP00000401602.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.124C>G
  hgvsp: ENSP00000389754.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.915C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.124C>G
  hgvsp: ENSP00000411644.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.124C>G
  hgvsp: ENSP00000412341.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.124C>G
  hgvsp: ENSP00000397720.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.124C>G
  hgvsp: ENSP00000390151.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.124C>G
  hgvsp: ENSP00000379742.2:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.124C>G
  hgvsp: ENSP00000412326.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.124C>G
  hgvsp: ENSP00000379741.2:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.124C>G
  hgvsp: ENSP00000414351.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.124C>G
  hgvsp: ENSP00000406964.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.124C>G
  hgvsp: ENSP00000410171.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.124C>G
  hgvsp: ENSP00000413005.1:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.124C>G
  hgvsp: ENSP00000187397.4:p.Leu42Val
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu42Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-35723371-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723371
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723371
    reference: chr 3
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.128A>G
  hgvsp: ENSP00000406964.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.128A>G
  hgvsp: ENSP00000379742.2:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.919A>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.128A>G
  hgvsp: ENSP00000412411.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.128A>G
  hgvsp: ENSP00000390151.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.128A>G
  hgvsp: ENSP00000389754.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000413005
  ensembl transcript: ENST00000419330
  gene symbol: ARPP21
  hgvsc: ENST00000419330.1:c.128A>G
  hgvsp: ENSP00000413005.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.128A>G
  hgvsp: ENSP00000412341.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.128A>G
  hgvsp: ENSP00000397720.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.128A>G
  hgvsp: ENSP00000411644.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.128A>G
  hgvsp: ENSP00000409331.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.128A>G
  hgvsp: ENSP00000410171.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.128A>G
  hgvsp: ENSP00000379741.2:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.128A>G
  hgvsp: ENSP00000396324.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.128A>G
  hgvsp: ENSP00000405276.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.128A>G
  hgvsp: ENSP00000401602.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.128A>G
  hgvsp: ENSP00000414351.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.128A>G
  hgvsp: ENSP00000417838.1:p.Gln43Arg
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln43Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-35723372-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723372
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723372
    reference: chr 3
allele count: 4
allele frequency: 3.314880498558027e-5
allele num: 120668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129G>A
  hgvsp: ENST00000187397.4:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129G>A
  hgvsp: ENST00000474696.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129G>A
  hgvsp: ENST00000452563.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129G>A
  hgvsp: ENST00000432682.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129G>A
  hgvsp: ENST00000396482.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129G>A
  hgvsp: ENST00000458225.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129G>A
  hgvsp: ENST00000413378.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129G>A
  hgvsp: ENST00000428373.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129G>A
  hgvsp: ENST00000438071.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129G>A
  hgvsp: ENST00000449196.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129G>A
  hgvsp: ENST00000427542.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129G>A
  hgvsp: ENST00000441454.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129G>A
  hgvsp: ENST00000417925.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129G>A
  hgvsp: ENST00000412048.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129G>A
  hgvsp: ENST00000396481.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129G>A
  hgvsp: ENST00000432450.1:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920G>A
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.129G>A
num of homozygotes: 1
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

3-35723388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723388
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723388
    reference: chr 3
allele count: 590
allele frequency: 4.895046876296358e-3
allele num: 120530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+16G>A
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 15
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

3-35723393-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723393
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723393
    reference: chr 3
allele count: 1
allele frequency: 8.301924386072691e-6
allele num: 120454
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+21C>G
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

3-35723393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723393
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723393
    reference: chr 3
allele count: 2
allele frequency: 1.660384877214538e-5
allele num: 120454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+21C>T
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-35723394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723394
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723394
    reference: chr 3
allele count: 1
allele frequency: 8.302200083022e-6
allele num: 120450
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+22C>T
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

3-35723397-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723397
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723395
    reference: chr 3
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+29_920+30delTC
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+29_129+30delTC
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: ACT
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/3-35723406-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723406
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723406
    reference: chr 3
allele count: 2
allele frequency: 1.663506005256679e-5
allele num: 120228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+34C>A
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

3-35723414-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723414
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723414
    reference: chr 3
allele count: 1
allele frequency: 8.324731111185109e-6
allele num: 120124
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+42T>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+42T>C
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/3-35723417-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723417
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723417
    reference: chr 3
allele count: 5
allele frequency: 4.165139448868748e-5
allele num: 120044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+45A>C
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

3-35723419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723419
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723419
    reference: chr 3
allele count: 472
allele frequency: 3.940228733617163e-3
allele num: 119790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+47C>T
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 8
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/3-35723421-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723421
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723421
    reference: chr 3
allele count: 3
allele frequency: 2.506223789076206e-5
allele num: 119702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+49C>A
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

3-35723421-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35723421
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35723421
    reference: chr 3
allele count: 1
allele frequency: 8.354079296920687e-6
allele num: 119702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412341
  ensembl transcript: ENST00000432450
  gene symbol: ARPP21
  hgvsc: ENST00000432450.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412326
  ensembl transcript: ENST00000417925
  gene symbol: ARPP21
  hgvsc: ENST00000417925.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000434383
  gene symbol: ARPP21
  hgvsc: ENST00000434383.2:n.920+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.129+49C>T
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

3-35724289-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35724289
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 35724289
    reference: chr 3
allele count: 2
allele frequency: 1.824517871152548e-5
allele num: 109618
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000397720
  ensembl transcript: ENST00000436702
  gene symbol: ARPP21
  hgvsc: ENST00000436702.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379742
  ensembl transcript: ENST00000396482
  gene symbol: ARPP21
  hgvsc: ENST00000396482.2:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000406964
  ensembl transcript: ENST00000441454
  gene symbol: ARPP21
  hgvsc: ENST00000441454.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000379741
  ensembl transcript: ENST00000396481
  gene symbol: ARPP21
  hgvsc: ENST00000396481.2:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000187397
  ensembl transcript: ENST00000187397
  gene symbol: ARPP21
  hgvsc: ENST00000187397.4:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000411644
  ensembl transcript: ENST00000450234
  gene symbol: ARPP21
  hgvsc: ENST00000450234.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000417838
  ensembl transcript: ENST00000474696
  gene symbol: ARPP21
  hgvsc: ENST00000474696.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000396324
  ensembl transcript: ENST00000452563
  gene symbol: ARPP21
  hgvsc: ENST00000452563.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000414351
  ensembl transcript: ENST00000458225
  gene symbol: ARPP21
  hgvsc: ENST00000458225.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000405276
  ensembl transcript: ENST00000444190
  gene symbol: ARPP21
  hgvsc: ENST00000444190.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl transcript: ENST00000461826
  gene symbol: ARPP21
  hgvsc: ENST00000461826.1:n.56-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000410171
  ensembl transcript: ENST00000438071
  gene symbol: ARPP21
  hgvsc: ENST00000438071.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390151
  ensembl transcript: ENST00000412048
  gene symbol: ARPP21
  hgvsc: ENST00000412048.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000390169
  ensembl transcript: ENST00000413378
  gene symbol: ARPP21
  hgvsc: ENST00000413378.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000415134
  ensembl transcript: ENST00000414496
  gene symbol: ARPP21
  hgvsc: ENST00000414496.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000401602
  ensembl transcript: ENST00000427542
  gene symbol: ARPP21
  hgvsc: ENST00000427542.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000412411
  ensembl transcript: ENST00000428373
  gene symbol: ARPP21
  hgvsc: ENST00000428373.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000389754
  ensembl transcript: ENST00000432682
  gene symbol: ARPP21
  hgvsc: ENST00000432682.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409808
  ensembl transcript: ENST00000449196
  gene symbol: ARPP21
  hgvsc: ENST00000449196.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000409331
  ensembl transcript: ENST00000438577
  gene symbol: ARPP21
  hgvsc: ENST00000438577.1:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000172995
  ensembl protein: ENSP00000337792
  ensembl transcript: ENST00000337271
  gene symbol: ARPP21
  hgvsc: ENST00000337271.5:c.130-51C>G
  variant of: http://identifiers.org/hgnc/16968
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.732101616628176e-3
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.655011251514626e-5
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66296
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.308e1

FS
type: SiteQuality
SIO_000300: 5.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.195e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 2.69683e6

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

GenotypeQuality
all individuals: 2544
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16112
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.781e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 2.711216e6

VQSLOD
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.154e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.712411830219032e-4
allele num: 16162
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.132e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQRankSum
type: SiteQuality
SIO_000300: -1.141e0

FS
type: SiteQuality
SIO_000300: 1.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.04e-1

DP
type: SiteQuality
SIO_000300: 2.713758e6

VQSLOD
type: SiteQuality
SIO_000300: -1.307e0

MQ
type: SiteQuality
SIO_000300: 5.723e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.32e-1

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005349522149426e-5
allele num: 66548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.216e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 2.714623e6

QD
type: SiteQuality
SIO_000300: 1.041e1

FS
type: SiteQuality
SIO_000300: 5.649e0

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

MQ
type: SiteQuality
SIO_000300: 5.712e1

GenotypeQuality
all individuals: 3475
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

DP
type: SiteQuality
SIO_000300: 2.722969e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

FS
type: SiteQuality
SIO_000300: 4.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.341e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 2917
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.72e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 2.722969e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -1.341e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 65
allele frequency: 5.617977528089887e-3
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.033244358165494e-4
allele num: 16484
num of homozygotes: 0

African
type: Population
allele count: 1447
allele frequency: 1.390543916970978e-1
allele num: 10406
num of homozygotes: 111

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 145
allele frequency: 2.174239016344279e-3
allele num: 66690
num of homozygotes: 2

MQ
type: SiteQuality
SIO_000300: 5.942e1

QD
type: SiteQuality
SIO_000300: 1.454e1

MQRankSum
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 2.800279e6

FS
type: SiteQuality
SIO_000300: 1.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.61e-1

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.745745e6

FS
type: SiteQuality
SIO_000300: 1.807e0

QD
type: SiteQuality
SIO_000300: 1.317e1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.745985e6

VQSLOD
type: SiteQuality
SIO_000300: -2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

QD
type: SiteQuality
SIO_000300: 1.223e1

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 3.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.632e1

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.425712553062462e-4
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.82e1

VQSLOD
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 5.217e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.746758e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
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allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
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African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 8.023999999999999e0

DP
type: SiteQuality
SIO_000300: 2.747238e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.03e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

QD
type: SiteQuality
SIO_000300: 2.214e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
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South Asian
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allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
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allele num: 908
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VQSLOD
type: SiteQuality
SIO_000300: 4.91e-1

FS
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 3.46e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.956507e6

MQ
type: SiteQuality
SIO_000300: 5.843e1

QD
type: SiteQuality
SIO_000300: 1.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

GenotypeQuality
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variant carriers: 14

European (Non-Finnish)
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allele count: 17528
allele frequency: 2.627964856517437e-1
allele num: 66698
num of homozygotes: 2371

European (Finnish)
type: Population
allele count: 1588
allele frequency: 2.403147699757869e-1
allele num: 6608
num of homozygotes: 197

Other
type: Population
allele count: 288
allele frequency: 3.171806167400881e-1
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South Asian
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allele count: 5542
allele frequency: 3.358380802326991e-1
allele num: 16502
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East Asian
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allele count: 3676
allele frequency: 4.26054705609643e-1
allele num: 8628
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African
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allele count: 3034
allele frequency: 2.916186082276048e-1
allele num: 10404
num of homozygotes: 423

Latino
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allele count: 5846
allele frequency: 5.050976326248487e-1
allele num: 11574
num of homozygotes: 1500

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.39e-1

QD
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DP
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SIO_000300: 3.956507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.46e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.91e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10404
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South Asian
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allele frequency: 0.0e0
allele num: 16448
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.53e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.245372e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.982e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.607e0

QD
type: SiteQuality
SIO_000300: 1.397e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: -8.521e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele frequency: 1.216249087813184e-4
allele num: 16444
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Latino
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allele frequency: 0.0e0
allele num: 11572
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66690
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.598e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.776e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.28e-1

GenotypeQuality
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variant carriers: 0

African
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Other
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allele count: 0
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East Asian
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allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 1.216693028348948e-4
allele num: 16438
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European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.498560460652591e-5
allele num: 66688
num of homozygotes: 0

DP
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MQ
type: SiteQuality
SIO_000300: 5.884e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.107e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

South Asian
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allele count: 0
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allele num: 16430
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MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 2.244232e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.75e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66420
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele frequency: 0.0e0
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Latino
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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South Asian
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allele num: 15272
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East Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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African
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

DP
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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African
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Other
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European (Non-Finnish)
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allele frequency: 6.051803437424352e-5
allele num: 66096
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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VQSLOD
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BaseQRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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African
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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East Asian
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Other
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FS
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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DP
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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Other
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
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allele num: 11544
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South Asian
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

East Asian
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Latino
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allele count: 6
allele frequency: 5.202011444425178e-4
allele num: 11534
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13458
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65562
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
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allele count: 1
allele frequency: 1.165501165501166e-3
allele num: 858
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FS
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.207e1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 2.165788e6

South Asian
type: Population
allele count: 2
allele frequency: 1.498351813005694e-4
allele num: 13348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65530
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.162013e6

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 1.604e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.061943109097033e-5
allele num: 65318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.023e0

FS
type: SiteQuality
SIO_000300: 8.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.092e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e-1

DP
type: SiteQuality
SIO_000300: 2.153742e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.121e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

FS
type: SiteQuality
SIO_000300: 1.752e0

QD
type: SiteQuality
SIO_000300: 1.084e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.464e0

DP
type: SiteQuality
SIO_000300: 2.153405e6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.084074373484237e-5
allele num: 12370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.665e0

DP
type: SiteQuality
SIO_000300: 2.145421e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.766e1

QD
type: SiteQuality
SIO_000300: 1.005e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.171506156077391e-5
allele num: 64814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.33e-1

FS
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.162e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.329e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.130231e6

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547460617127294e-5
allele num: 64622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.979e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.845e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.29e-1

DP
type: SiteQuality
SIO_000300: 2.117089e6

QD
type: SiteQuality
SIO_000300: 1.261e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.308e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.859e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102699348433137e-5
allele num: 64460
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.446e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.68e0

DP
type: SiteQuality
SIO_000300: 2.112022e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.9e-2

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.106747856343979e-5
allele num: 64376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.112782e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

FS
type: SiteQuality
SIO_000300: 5.226e0

VQSLOD
type: SiteQuality
SIO_000300: -1.735e0

MQ
type: SiteQuality
SIO_000300: 5.807e1

QD
type: SiteQuality
SIO_000300: 1.225e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.-38-9A>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390151
ensembl transcript: ENST00000412048
gene symbol: ARPP21
hgvsc: ENST00000412048.1:c.-38-9A>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.-38-9A>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.-38-9A>G
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 2723
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5479
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1943
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7400
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17143
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 354
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10449
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10530
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1419
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 892
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 520
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2502
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3846
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4533
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6294
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6008
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555064846204087e-5
allele num: 64306
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.50268e6

VQSLOD
type: SiteQuality
SIO_000300: 2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.029e1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000406964
ensembl transcript: ENST00000441454
gene symbol: ARPP21
hgvsc: ENST00000441454.1:c.-42C>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000401602
ensembl transcript: ENST00000427542
gene symbol: ARPP21
hgvsc: ENST00000427542.1:c.-38-4C>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.-38-4C>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412411
ensembl transcript: ENST00000428373
gene symbol: ARPP21
hgvsc: ENST00000428373.1:c.-38-4C>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.-38-4C>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.-38-4C>G
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 1422
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2742
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1923
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10984
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6589
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6998
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 20777
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 893
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 358
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5681
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 520
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6020
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19591
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1934
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.010917913465427e-4
allele num: 9892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.528456e6

VQSLOD
type: SiteQuality
SIO_000300: -2.747e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.52e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.182e0

QD
type: SiteQuality
SIO_000300: 2.496e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.-28C>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.-28C>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000396324
ensembl transcript: ENST00000452563
gene symbol: ARPP21
hgvsc: ENST00000452563.1:c.-28C>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.-28C>A
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 1693
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1743
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 521
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1432
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12734
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 26520
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6547
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2829
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3725
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 211
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 898
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6072
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.544735541275334e-5
allele num: 64736
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

DP
type: SiteQuality
SIO_000300: 1.607376e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQ
type: SiteQuality
SIO_000300: 5.87e1

VQSLOD
type: SiteQuality
SIO_000300: -2.854e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.809e0

QD
type: SiteQuality
SIO_000300: 7.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.551e0

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000396324
ensembl transcript: ENST00000452563
gene symbol: ARPP21
hgvsc: ENST00000452563.1:c.-23T>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.-23T>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000401602
ensembl transcript: ENST00000427542
gene symbol: ARPP21
hgvsc: ENST00000427542.1:c.-23T>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.-23T>A
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 96
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27463
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13129
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1439
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2864
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1539
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6730
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1224
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 521
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 898
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2855
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27718
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6075
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539740707664829e-5
allele num: 64946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

QD
type: SiteQuality
SIO_000300: 1.478e1

MQ
type: SiteQuality
SIO_000300: 5.845e1

MQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

FS
type: SiteQuality
SIO_000300: 2.062e0

DP
type: SiteQuality
SIO_000300: 1.625765e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.041e0

VQSLOD
type: SiteQuality
SIO_000300: -1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.-17A>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379741
ensembl transcript: ENST00000396481
gene symbol: ARPP21
hgvsc: ENST00000396481.2:c.-17A>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.-17A>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.-17A>T
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 1450
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6941
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 522
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2888
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1834
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 171
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1301
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28622
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 696
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 901
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13530
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 228
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6084
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29556
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2888
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.066826141626031e-5
allele num: 65214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.105e1

FS
type: SiteQuality
SIO_000300: 6.355e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.15e-1

DP
type: SiteQuality
SIO_000300: 1.647713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e-2

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000398598
ensembl transcript: ENST00000421492
gene symbol: ARPP21
hgvsc: ENST00000421492.1:c.-8C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000415134
ensembl transcript: ENST00000414496
gene symbol: ARPP21
hgvsc: ENST00000414496.1:c.-8C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.-8C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379742
ensembl transcript: ENST00000396482
gene symbol: ARPP21
hgvsc: ENST00000396482.2:c.-8C>T
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 29543
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 763
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 277
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 826
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14154
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2960
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 524
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7291
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 139
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1470
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 911
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6089
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2926
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65680
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.129704548240775e-5
allele num: 16314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

DP
type: SiteQuality
SIO_000300: 1.676783e6

VQSLOD
type: SiteQuality
SIO_000300: 5.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 7.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000172995
ensembl transcript: ENST00000434383
gene symbol: ARPP21
hgvsc: ENST00000434383.2:n.785T>C
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000417838
ensembl transcript: ENST00000474696
gene symbol: ARPP21
hgvsc: ENST00000474696.1:c.-7T>C
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.-7T>C
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.-7T>C
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 7339
bin: 3.25e1
variant carriers: 11

GenotypeDepth
all individuals: 586
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 263
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 29561
bin: 2.25e1
variant carriers: 6

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 5.75e1
variant carriers: 5

GenotypeDepth
all individuals: 527
bin: 5.25e1
variant carriers: 4

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 916
bin: 4.75e1
variant carriers: 7

GenotypeDepth
all individuals: 185
bin: 6.75e1
variant carriers: 3

GenotypeDepth
all individuals: 14199
bin: 2.75e1
variant carriers: 5

GenotypeDepth
all individuals: 688
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2964
bin: 3.75e1
variant carriers: 11

GenotypeDepth
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 781
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 135
bin: 7.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1470
bin: 4.25e1
variant carriers: 4

GenotypeDepth
all individuals: 229
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 9.75e1
variant carriers: 68

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31361
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7854
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3952
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2927
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.658631690889755e-4
allele num: 11284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 64
allele frequency: 6.236601052426427e-3
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.06e0

QD
type: SiteQuality
SIO_000300: 1.354e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.27e-1

DP
type: SiteQuality
SIO_000300: 1.680056e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412341
ensembl transcript: ENST00000432450
gene symbol: ARPP21
hgvsc: ENST00000432450.1:c.16G>C
hgvsp: ENSP00000412341.1:p.Asp6His
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412411
ensembl transcript: ENST00000428373
gene symbol: ARPP21
hgvsc: ENST00000428373.1:c.16G>C
hgvsp: ENSP00000412411.1:p.Asp6His
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.16G>C
hgvsp: ENSP00000187397.4:p.Asp6His
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.16G>C
hgvsp: ENSP00000413005.1:p.Asp6His
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.16G>C
hgvsp: ENSP00000412326.1:p.Asp6His
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.16G>C
hgvsp: ENSP00000337792.5:p.Asp6His
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 402
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15055
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3043
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 527
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 290
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1507
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 922
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7699
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29133
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31995
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6104
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511761504505049e-5
allele num: 66148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.701656e6

FS
type: SiteQuality
SIO_000300: 2.271e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.298e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.465e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.19C>T
hgvsp: ENST00000419330.1:c.19C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.19C>T
hgvsp: ENST00000337271.5:c.19C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000401602
ensembl transcript: ENST00000427542
gene symbol: ARPP21
hgvsc: ENST00000427542.1:c.19C>T
hgvsp: ENST00000427542.1:c.19C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.19C>T
hgvsp: ENST00000436702.1:c.19C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.19C>T
hgvsp: ENST00000187397.4:c.19C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000396324
ensembl transcript: ENST00000452563
gene symbol: ARPP21
hgvsc: ENST00000452563.1:c.19C>T
hgvsp: ENST00000452563.1:c.19C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15102
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7747
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29037
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 924
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3063
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 230
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 207
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1508
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 530
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6103
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31901
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4082
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073858114674441e-5
allele num: 16464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.587e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.063e1

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.703323e6

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000398598
ensembl transcript: ENST00000421492
gene symbol: ARPP21
hgvsc: ENST00000421492.1:c.34G>A
hgvsp: ENSP00000398598.1:p.Ala12Thr
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.34G>A
hgvsp: ENSP00000390169.1:p.Ala12Thr
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.34G>A
hgvsp: ENSP00000397720.1:p.Ala12Thr
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.34G>A
hgvsp: ENSP00000409331.1:p.Ala12Thr
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.34G>A
hgvsp: ENSP00000412326.1:p.Ala12Thr
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379742
ensembl transcript: ENST00000396482
gene symbol: ARPP21
hgvsc: ENST00000396482.2:c.34G>A
hgvsp: ENSP00000379742.2:p.Ala12Thr
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 182
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 211
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28640
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3107
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 320
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15417
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7868
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 931
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1525
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2986
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6111
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.525159888982744e-5
allele num: 66296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.709577e6

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

QD
type: SiteQuality
SIO_000300: 1.181e1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e0

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.36A>G
hgvsp: ENST00000419330.1:c.36A>G(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.36A>G
hgvsp: ENST00000444190.1:c.36A>G(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379742
ensembl transcript: ENST00000396482
gene symbol: ARPP21
hgvsc: ENST00000396482.2:c.36A>G
hgvsp: ENST00000396482.2:c.36A>G(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.36A>G
hgvsp: ENST00000413378.1:c.36A>G(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000401602
ensembl transcript: ENST00000427542
gene symbol: ARPP21
hgvsc: ENST00000427542.1:c.36A>G
hgvsp: ENST00000427542.1:c.36A>G(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000396324
ensembl transcript: ENST00000452563
gene symbol: ARPP21
hgvsc: ENST00000452563.1:c.36A>G
hgvsp: ENST00000452563.1:c.36A>G(p.%3D)
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 208
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 532
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28600
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15480
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3103
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 584
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1525
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7872
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6111
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508432135638218e-5
allele num: 66294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.049e0

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

DP
type: SiteQuality
SIO_000300: 1.71003e6

FS
type: SiteQuality
SIO_000300: 6.781e0

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.664e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 7.16e0

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379742
ensembl transcript: ENST00000396482
gene symbol: ARPP21
hgvsc: ENST00000396482.2:c.62C>T
hgvsp: ENSP00000379742.2:p.Thr21Met
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.62C>T
hgvsp: ENSP00000397720.1:p.Thr21Met
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.62C>T
hgvsp: ENSP00000413005.1:p.Thr21Met
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000417838
ensembl transcript: ENST00000474696
gene symbol: ARPP21
hgvsc: ENST00000474696.1:c.62C>T
hgvsp: ENSP00000417838.1:p.Thr21Met
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000172995
ensembl transcript: ENST00000434383
gene symbol: ARPP21
hgvsc: ENST00000434383.2:n.853C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000396324
ensembl transcript: ENST00000452563
gene symbol: ARPP21
hgvsc: ENST00000452563.1:c.62C>T
hgvsp: ENSP00000396324.1:p.Thr21Met
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 8002
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3148
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 15778
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 536
bin: 5.25e1
variant carriers: 4

GenotypeDepth
all individuals: 942
bin: 4.75e1
variant carriers: 10

GenotypeDepth
all individuals: 82
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 28162
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 184
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 252
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 4

GenotypeDepth
all individuals: 586
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 132
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1546
bin: 4.25e1
variant carriers: 5

GenotypeDepth
all individuals: 372
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2981
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6148
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4100
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 1.980499695307739e-3
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.463125244677327e-4
allele num: 66414
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.787037037037037e-4
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

FS
type: SiteQuality
SIO_000300: 5.26e-1

DP
type: SiteQuality
SIO_000300: 1.717121e6

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

QD
type: SiteQuality
SIO_000300: 1.399e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000398598
ensembl transcript: ENST00000421492
gene symbol: ARPP21
hgvsc: ENST00000421492.1:c.63G>A
hgvsp: ENST00000421492.1:c.63G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379742
ensembl transcript: ENST00000396482
gene symbol: ARPP21
hgvsc: ENST00000396482.2:c.63G>A
hgvsp: ENST00000396482.2:c.63G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000411644
ensembl transcript: ENST00000450234
gene symbol: ARPP21
hgvsc: ENST00000450234.1:c.63G>A
hgvsp: ENST00000450234.1:c.63G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.63G>A
hgvsp: ENST00000337271.5:c.63G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.63G>A
hgvsp: ENST00000436702.1:c.63G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.63G>A
hgvsp: ENST00000458225.1:c.63G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28151
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 255
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 178
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3146
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15790
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8021
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1545
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4104
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6123
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010416039496658e-5
allele num: 66436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.759635599159075e-5
allele num: 11416
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.4102e1

DP
type: SiteQuality
SIO_000300: 1.716454e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

QD
type: SiteQuality
SIO_000300: 1.464e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

VQSLOD
type: SiteQuality
SIO_000300: -6.538e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.68C>A
hgvsp: ENSP00000337792.5:p.Thr23Asn
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.68C>A
hgvsp: ENSP00000409331.1:p.Thr23Asn
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000415134
ensembl transcript: ENST00000414496
gene symbol: ARPP21
hgvsc: ENST00000414496.1:c.68C>A
hgvsp: ENSP00000415134.1:p.Thr23Asn
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.68C>A
hgvsp: ENSP00000390169.1:p.Thr23Asn
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.68C>A
hgvsp: ENSP00000414351.1:p.Thr23Asn
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.68C>A
hgvsp: ENSP00000187397.4:p.Thr23Asn
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 28064
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 938
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8043
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 184
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3155
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15869
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1540
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6123
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31940
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4110
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

FS
type: SiteQuality
SIO_000300: 1.0838e1

VQSLOD
type: SiteQuality
SIO_000300: -1.034e0

QD
type: SiteQuality
SIO_000300: 1.462e1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

DP
type: SiteQuality
SIO_000300: 1.71712e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.34e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409808
ensembl transcript: ENST00000449196
gene symbol: ARPP21
hgvsc: ENST00000449196.1:c.78C>T
hgvsp: ENST00000449196.1:c.78C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000406964
ensembl transcript: ENST00000441454
gene symbol: ARPP21
hgvsc: ENST00000441454.1:c.78C>T
hgvsp: ENST00000441454.1:c.78C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390151
ensembl transcript: ENST00000412048
gene symbol: ARPP21
hgvsc: ENST00000412048.1:c.78C>T
hgvsp: ENST00000412048.1:c.78C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.78C>T
hgvsp: ENST00000438577.1:c.78C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.78C>T
hgvsp: ENST00000458225.1:c.78C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.78C>T
hgvsp: ENST00000444190.1:c.78C>T(p.%3D)
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8076
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 28005
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 935
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 228
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3155
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 370
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15939
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1543
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4113
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6125
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009510051763573e-5
allele num: 66456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.755034144633164e-5
allele num: 11422
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.266e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

QD
type: SiteQuality
SIO_000300: 1.178e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.718191e6

VQSLOD
type: SiteQuality
SIO_000300: 3.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000411644
ensembl transcript: ENST00000450234
gene symbol: ARPP21
hgvsc: ENST00000450234.1:c.79G>A
hgvsp: ENSP00000411644.1:p.Gly27Ser
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000406964
ensembl transcript: ENST00000441454
gene symbol: ARPP21
hgvsc: ENST00000441454.1:c.79G>A
hgvsp: ENSP00000406964.1:p.Gly27Ser
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000172995
ensembl transcript: ENST00000434383
gene symbol: ARPP21
hgvsc: ENST00000434383.2:n.870G>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.79G>A
hgvsp: ENSP00000409331.1:p.Gly27Ser
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000417838
ensembl transcript: ENST00000474696
gene symbol: ARPP21
hgvsc: ENST00000474696.1:c.79G>A
hgvsp: ENSP00000417838.1:p.Gly27Ser
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.79G>A
hgvsp: ENSP00000414351.1:p.Gly27Ser
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 27999
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8083
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3164
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15936
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 933
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 371
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1543
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6124
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2994
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32001
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.927153594141453e-4
allele num: 10378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.165e0

DP
type: SiteQuality
SIO_000300: 1.718472e6

QD
type: SiteQuality
SIO_000300: 1.433e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.111G>A
hgvsp: ENST00000187397.4:c.111G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000415134
ensembl transcript: ENST00000414496
gene symbol: ARPP21
hgvsc: ENST00000414496.1:c.111G>A
hgvsp: ENST00000414496.1:c.111G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.111G>A
hgvsp: ENST00000458225.1:c.111G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.111G>A
hgvsp: ENST00000436702.1:c.111G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.111G>A
hgvsp: ENST00000417925.1:c.111G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 939
bin: 4.75e1
variant carriers: 3

GenotypeDepth
all individuals: 15998
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3162
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1547
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 8092
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 240
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 187
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 27913
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 234
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 235
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 538
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 32071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6141
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 2991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8389
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.152073732718894e-3
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.7e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.275e1

DP
type: SiteQuality
SIO_000300: 1.7195e6

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.114G>A
hgvsp: ENST00000444190.1:c.114G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379742
ensembl transcript: ENST00000396482
gene symbol: ARPP21
hgvsc: ENST00000396482.2:c.114G>A
hgvsp: ENST00000396482.2:c.114G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.114G>A
hgvsp: ENST00000436702.1:c.114G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.114G>A
hgvsp: ENST00000458225.1:c.114G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.114G>A
hgvsp: ENST00000419330.1:c.114G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27905
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16024
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 232
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8095
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1542
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 935
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 244
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3167
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2994
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6127
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

VQSLOD
type: SiteQuality
SIO_000300: -1.382e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
SIO_000300: 1.719037e6

QD
type: SiteQuality
SIO_000300: 4.17e0

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.114G>T
hgvsp: ENSP00000187397.4:p.Glu38Asp
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000415134
ensembl transcript: ENST00000414496
gene symbol: ARPP21
hgvsc: ENST00000414496.1:c.114G>T
hgvsp: ENSP00000415134.1:p.Glu38Asp
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.114G>T
hgvsp: ENSP00000412326.1:p.Glu38Asp
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000172995
ensembl transcript: ENST00000434383
gene symbol: ARPP21
hgvsc: ENST00000434383.2:n.905G>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.114G>T
hgvsp: ENSP00000409331.1:p.Glu38Asp
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 244
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27905
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8095
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16024
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1542
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 935
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3167
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3319
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6127
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2994
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4103
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32137
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63020030816641e-5
allele num: 10384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.382e0

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.719037e6

QD
type: SiteQuality
SIO_000300: 4.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.9e-1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412411
ensembl transcript: ENST00000428373
gene symbol: ARPP21
hgvsc: ENST00000428373.1:c.124C>G
hgvsp: ENSP00000412411.1:p.Leu42Val
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.124C>G
hgvsp: ENSP00000409331.1:p.Leu42Val
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.124C>G
hgvsp: ENSP00000337792.5:p.Leu42Val
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.124C>G
hgvsp: ENSP00000390169.1:p.Leu42Val
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000417838
ensembl transcript: ENST00000474696
gene symbol: ARPP21
hgvsc: ENST00000474696.1:c.124C>G
hgvsp: ENSP00000417838.1:p.Leu42Val
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 369
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1539
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3173
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 534
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27789
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8076
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 148
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 312
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16022
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 936
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31999
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6128
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2993
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.821272462360369e-4
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.717599e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.234e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.125e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409808
ensembl transcript: ENST00000449196
gene symbol: ARPP21
hgvsc: ENST00000449196.1:c.128A>G
hgvsp: ENSP00000409808.1:p.Gln43Arg
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000187397
ensembl transcript: ENST00000187397
gene symbol: ARPP21
hgvsc: ENST00000187397.4:c.128A>G
hgvsp: ENSP00000187397.4:p.Gln43Arg
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.128A>G
hgvsp: ENSP00000412326.1:p.Gln43Arg
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.128A>G
hgvsp: ENSP00000390169.1:p.Gln43Arg
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000415134
ensembl transcript: ENST00000414496
gene symbol: ARPP21
hgvsc: ENST00000414496.1:c.128A>G
hgvsp: ENSP00000415134.1:p.Gln43Arg
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.128A>G
hgvsp: ENSP00000337792.5:p.Gln43Arg
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 27666
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3177
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16047
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 586
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 937
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1538
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8079
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 532
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6126
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8382
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31877
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.058e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.429e0

DP
type: SiteQuality
SIO_000300: 1.716835e6

FS
type: SiteQuality
SIO_000300: 7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.129G>A
hgvsp: ENST00000436702.1:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000409331
ensembl transcript: ENST00000438577
gene symbol: ARPP21
hgvsc: ENST00000438577.1:c.129G>A
hgvsp: ENST00000438577.1:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.129G>A
hgvsp: ENST00000444190.1:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.129G>A
hgvsp: ENST00000337271.5:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000413005
ensembl transcript: ENST00000419330
gene symbol: ARPP21
hgvsc: ENST00000419330.1:c.129G>A
hgvsp: ENST00000419330.1:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000411644
ensembl transcript: ENST00000450234
gene symbol: ARPP21
hgvsc: ENST00000450234.1:c.129G>A
hgvsp: ENST00000450234.1:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: synonymous_variant
consequence: splice_region_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000415134
ensembl transcript: ENST00000414496
gene symbol: ARPP21
hgvsc: ENST00000414496.1:c.129G>A
hgvsp: ENST00000414496.1:c.129G>A(p.%3D)
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 16057
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1541
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 183
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 165
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8083
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3172
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 278
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 233
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 133
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27652
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 372
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 936
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 585
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 533
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 80
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6128
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1625
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 4
allele frequency: 3.500787677227376e-4
allele num: 11426
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.716925e6

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.039e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.304e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.129+16G>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.129+16G>A
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 208
bin: 6.75e1
variant carriers: 28

GenotypeDepth
all individuals: 365
bin: 1.75e1
variant carriers: 5

GenotypeDepth
all individuals: 411
bin: 5.75e1
variant carriers: 46

GenotypeDepth
all individuals: 320
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15825
bin: 2.75e1
variant carriers: 14

GenotypeDepth
all individuals: 770
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 126
bin: 7.75e1
variant carriers: 29

GenotypeDepth
all individuals: 8004
bin: 3.25e1
variant carriers: 26

GenotypeDepth
all individuals: 983
bin: 4.75e1
variant carriers: 65

GenotypeDepth
all individuals: 95
bin: 9.25e1
variant carriers: 15

GenotypeDepth
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26914
bin: 2.25e1
variant carriers: 11

GenotypeDepth
all individuals: 3172
bin: 3.75e1
variant carriers: 48

GenotypeDepth
all individuals: 1575
bin: 4.25e1
variant carriers: 55

GenotypeDepth
all individuals: 110
bin: 8.25e1
variant carriers: 18

GenotypeDepth
all individuals: 150
bin: 7.25e1
variant carriers: 18

GenotypeDepth
all individuals: 669
bin: 9.75e1
variant carriers: 87

GenotypeDepth
all individuals: 273
bin: 6.25e1
variant carriers: 48

GenotypeDepth
all individuals: 86
bin: 8.75e1
variant carriers: 9

GenotypeDepth
all individuals: 572
bin: 5.25e1
variant carriers: 52

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4021
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6606
bin: 9.75e1
variant carriers: 573

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30996
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 7.929730389166768e-4
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.522294913925654e-5
allele num: 66338
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.839523475823406e-3
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 550
allele frequency: 5.303760848601736e-2
allele num: 10370
num of homozygotes: 15

Other
type: Population
allele count: 3
allele frequency: 3.311258278145695e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

QD
type: SiteQuality
SIO_000300: 1.278e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 6.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.485e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.58e-2

DP
type: SiteQuality
SIO_000300: 1.730473e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.129+21C>G
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.129+21C>G
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 8082
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 139
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26587
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3234
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 972
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 964
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 15902
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 501
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1587
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 599
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6151
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30830
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.765778401122019e-5
allele num: 11408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

DP
type: SiteQuality
SIO_000300: 1.714074e6

QD
type: SiteQuality
SIO_000300: 1.049e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl transcript: ENST00000434383
gene symbol: ARPP21
hgvsc: ENST00000434383.2:n.920+21C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.129+21C>T
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 336
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 139
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8082
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 964
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26587
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 972
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3234
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 501
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1587
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 599
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15902
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30830
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8245
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6151
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.346316283435007e-4
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.714074e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

QD
type: SiteQuality
SIO_000300: 1.049e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.204e0

MQRankSum
type: SiteQuality
SIO_000300: -2.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000379741
ensembl transcript: ENST00000396481
gene symbol: ARPP21
hgvsc: ENST00000396481.2:c.129+22C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl transcript: ENST00000434383
gene symbol: ARPP21
hgvsc: ENST00000434383.2:n.920+22C>T
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 962
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3228
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 539
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26517
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1018
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15898
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 334
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8082
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 598
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 544
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1589
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 929
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6147
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8244
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.504e0

FS
type: SiteQuality
SIO_000300: 2.977e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.194e1

DP
type: SiteQuality
SIO_000300: 1.713045e6

MQ
type: SiteQuality
SIO_000300: 5.895e1

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.3e-2

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.129+29_129+30delTC
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000414351
ensembl transcript: ENST00000458225
gene symbol: ARPP21
hgvsc: ENST00000458225.1:c.129+29_129+30delTC
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 26189
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8050
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 962
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1584
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 598
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15824
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 544
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 775
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 349
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1204
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3224
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2998
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8225
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.76731544800982e-5
allele num: 11406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.859e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.138e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 1.708925e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl transcript: ENST00000434383
gene symbol: ARPP21
hgvsc: ENST00000434383.2:n.920+34C>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000397720
ensembl transcript: ENST00000436702
gene symbol: ARPP21
hgvsc: ENST00000436702.1:c.129+34C>A
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 544
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1627
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 964
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1581
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2350
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8050
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24578
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3215
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15388
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 376
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 598
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 378
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 794
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28290
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3000
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.76731544800982e-5
allele num: 11406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510072181450273e-5
allele num: 66222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.96e-1

QD
type: SiteQuality
SIO_000300: 1.139e1

FS
type: SiteQuality
SIO_000300: 6.546e0

DP
type: SiteQuality
SIO_000300: 1.694042e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.786e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000412326
ensembl transcript: ENST00000417925
gene symbol: ARPP21
hgvsc: ENST00000417925.1:c.129+42T>C
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.129+42T>C
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 427
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3210
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 544
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1684
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7903
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3635
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 960
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24029
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1577
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14690
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 599
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 5.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 1.681545e6

FS
type: SiteQuality
SIO_000300: 3.221e0

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000396324
ensembl transcript: ENST00000452563
gene symbol: ARPP21
hgvsc: ENST00000452563.1:c.129+45A>C
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000415134
ensembl transcript: ENST00000414496
gene symbol: ARPP21
hgvsc: ENST00000414496.1:c.129+45A>C
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3212
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1573
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 544
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 458
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3608
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24173
bin: 2.25e1
variant carriers: 3

GenotypeDepth
all individuals: 14544
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 965
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1702
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7877
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 598
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6148
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 960
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3178
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.463357556349304e-4
allele num: 16238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.686168151879117e-5
allele num: 10324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.415e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.679991e6

QD
type: SiteQuality
SIO_000300: 9.02e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000401602
ensembl transcript: ENST00000427542
gene symbol: ARPP21
hgvsc: ENST00000427542.1:c.129+47C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000390169
ensembl transcript: ENST00000413378
gene symbol: ARPP21
hgvsc: ENST00000413378.1:c.129+47C>T
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 607
bin: 9.75e1
variant carriers: 11

GenotypeDepth
all individuals: 151
bin: 7.25e1
variant carriers: 12

GenotypeDepth
all individuals: 14516
bin: 2.75e1
variant carriers: 72

GenotypeDepth
all individuals: 3598
bin: 1.75e1
variant carriers: 21

GenotypeDepth
all individuals: 99
bin: 8.25e1
variant carriers: 4

GenotypeDepth
all individuals: 91
bin: 8.75e1
variant carriers: 7

GenotypeDepth
all individuals: 24019
bin: 2.25e1
variant carriers: 45

GenotypeDepth
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 985
bin: 4.75e1
variant carriers: 32

GenotypeDepth
all individuals: 556
bin: 5.25e1
variant carriers: 20

GenotypeDepth
all individuals: 499
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 385
bin: 5.75e1
variant carriers: 15

GenotypeDepth
all individuals: 1612
bin: 4.25e1
variant carriers: 51

GenotypeDepth
all individuals: 1696
bin: 1.25e1
variant carriers: 13

GenotypeDepth
all individuals: 3253
bin: 3.75e1
variant carriers: 62

GenotypeDepth
all individuals: 243
bin: 6.25e1
variant carriers: 8

GenotypeDepth
all individuals: 7862
bin: 3.25e1
variant carriers: 75

GenotypeDepth
all individuals: 108
bin: 7.75e1
variant carriers: 6

GenotypeDepth
all individuals: 197
bin: 6.75e1
variant carriers: 8

GenotypeDepth
all individuals: 86
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23608
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1215
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 163
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7524
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 232
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1039
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6539
bin: 9.75e1
variant carriers: 451

GenotypeQuality
all individuals: 920
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2972
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 554
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.333333333333334e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.211180124223603e-5
allele num: 16100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.565898980116818e-5
allele num: 66086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

African
type: Population
allele count: 448
allele frequency: 4.345295829291949e-2
allele num: 10310
num of homozygotes: 8

Latino
type: Population
allele count: 15
allele frequency: 1.317870321560358e-3
allele num: 11382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.29e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 2.182e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

DP
type: SiteQuality
SIO_000300: 1.68522e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.129+49C>A
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000337792
ensembl transcript: ENST00000337271
gene symbol: ARPP21
hgvsc: ENST00000337271.5:c.129+49C>A
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7887
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1721
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14802
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3265
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 518
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23688
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3588
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1612
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 980
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6171
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22227
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.637130801687763e-4
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

QD
type: SiteQuality
SIO_000300: 1.386e1

VQSLOD
type: SiteQuality
SIO_000300: -1.451e0

DP
type: SiteQuality
SIO_000300: 1.68576e6

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 9.244e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.219e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000417838
ensembl transcript: ENST00000474696
gene symbol: ARPP21
hgvsc: ENST00000474696.1:c.129+49C>T
variant of: http://identifiers.org/hgnc/16968

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000172995
ensembl protein: ENSP00000405276
ensembl transcript: ENST00000444190
gene symbol: ARPP21
hgvsc: ENST00000444190.1:c.129+49C>T
variant of: http://identifiers.org/hgnc/16968

GenotypeDepth
all individuals: 23688
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 238
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7887
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3588
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3265
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 518
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 980
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1721
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14802
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1612
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22227
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6171
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3156
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.219e0

MQ
type: SiteQuality
SIO_000300: 5.878e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.386e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 9.244e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.68576e6

VQSLOD
type: SiteQuality
SIO_000300: -1.451e0