4-143067148-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067148
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067148
    reference: chr 4
allele count: 3
allele frequency: 2.474879968321537e-5
allele num: 121218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1565A>G
  hgvsp: ENSP00000422793.1:p.Asp522Gly
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*292A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1565A>G
  hgvsp: ENSP00000425487.1:p.Asp522Gly
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1565A>G
  hgvsp: ENSP00000262992.4:p.Asp522Gly
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1565A>G
  hgvsp: ENSP00000427250.1:p.Asp522Gly
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1565A>G
  hgvsp: ENSP00000423954.1:p.Asp522Gly
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1010A>G
  hgvsp: ENSP00000426207.1:p.Asp337Gly
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1565A>G
  hgvsp: ENSP00000308441.4:p.Asp522Gly
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1178A>G
  hgvsp: ENSP00000421065.1:p.Asp393Gly
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp522Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

4-143067149-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067149
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067149
    reference: chr 4
allele count: 1
allele frequency: 8.249736008447729e-6
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1564G>A
  hgvsp: ENSP00000422793.1:p.Asp522Asn
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1009G>A
  hgvsp: ENSP00000426207.1:p.Asp337Asn
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1177G>A
  hgvsp: ENSP00000421065.1:p.Asp393Asn
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*291G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1564G>A
  hgvsp: ENSP00000427250.1:p.Asp522Asn
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1564G>A
  hgvsp: ENSP00000308441.4:p.Asp522Asn
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1564G>A
  hgvsp: ENSP00000262992.4:p.Asp522Asn
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1564G>A
  hgvsp: ENSP00000425487.1:p.Asp522Asn
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1564G>A
  hgvsp: ENSP00000423954.1:p.Asp522Asn
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp522Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

4-143067157-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067157
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067157
    reference: chr 4
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1564-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*291-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1177-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1564-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1564-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1564-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1564-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1564-8T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1009-8T>C
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5560
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1564-8T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-143067159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067159
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067159
    reference: chr 4
allele count: 1
allele frequency: 8.258047467256841e-6
allele num: 121094
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1564-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*291-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1564-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1564-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1564-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1009-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1177-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1564-10C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1564-10C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49204
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

4-143067160-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067160
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067160
    reference: chr 4
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1564-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1177-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1564-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1009-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1564-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*291-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1564-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1564-11G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1564-11G>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

4-143067161-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067161
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067161
    reference: chr 4
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*291-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1564-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1009-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1564-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1564-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1177-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1564-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1564-12T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1564-12T>C
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

4-143067174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067174
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067174
    reference: chr 4
allele count: 1
allele frequency: 8.269656974628692e-6
allele num: 120924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1177-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1564-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1009-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1564-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1564-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*291-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1564-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1564-25G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1564-25G>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8234
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49202
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ

4-143067183-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143067183
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143067183
    reference: chr 4
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1177-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1009-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1564-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1564-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1564-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*291-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1564-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1564-34C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1564-34C>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8235
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

4-143081467-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081467
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081467
    reference: chr 4
allele count: 1
allele frequency: 9.022664934314999e-6
allele num: 110832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+44A>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

4-143081468-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081468
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081468
    reference: chr 4
allele count: 1
allele frequency: 9.024782051513457e-6
allele num: 110806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+43G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+43G>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

4-143081478-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081478
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081478
    reference: chr 4
allele count: 7
allele frequency: 6.306874493197586e-5
allele num: 110990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+33G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+33G>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

4-143081480-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081480
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081480
    reference: chr 4
allele count: 1
allele frequency: 9.005601484123124e-6
allele num: 111042
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+31A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+31A>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30703
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6893
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

4-143081484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081484
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081484
    reference: chr 4
allele count: 1
allele frequency: 9.000576036866359e-6
allele num: 111104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+27C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+27C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

4-143081486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081486
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081486
    reference: chr 4
allele count: 1
allele frequency: 8.99571803821381e-6
allele num: 111164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+25C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+25C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6892
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/4-143081492-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081492
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081492
    reference: chr 4
allele count: 1
allele frequency: 8.977305372019535e-6
allele num: 111392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+19G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+19G>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

4-143081492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081492
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081492
    reference: chr 4
allele count: 6
allele frequency: 5.386383223211721e-5
allele num: 111392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+19G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+19G>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30738
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-143081493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081493
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081493
    reference: chr 4
allele count: 2
allele frequency: 1.791761480711688e-5
allele num: 111622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+18C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+18C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6889
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

4-143081500-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081500
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081498
    reference: chr 4
allele count: 1
allele frequency: 8.920765758532712e-6
allele num: 112098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*290+9_*290+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1008+9_1008+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1563+9_1563+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1563+9_1563+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1563+9_1563+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1563+9_1563+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1563+9_1563+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1176+9_1176+10delCT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1563+9_1563+10delCT
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: AAG
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

4-143081514-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081514
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081514
    reference: chr 4
allele count: 1
allele frequency: 8.808554868488276e-6
allele num: 113526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1560G>A
  hgvsp: ENST00000308502.4:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1173G>A
  hgvsp: ENST00000514525.1:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1005G>A
  hgvsp: ENST00000511838.1:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*287G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1560G>A
  hgvsp: ENST00000509777.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1560G>A
  hgvsp: ENST00000508116.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1560G>A
  hgvsp: ENST00000510812.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1560G>A
  hgvsp: ENST00000513000.1:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1560G>A
  hgvsp: ENST00000262992.4:c.1560G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu520Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

4-143081519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081519
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081519
    reference: chr 4
allele count: 1
allele frequency: 8.755494072530513e-6
allele num: 114214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.1000G>A
  hgvsp: ENSP00000426207.1:p.Glu334Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1555G>A
  hgvsp: ENSP00000262992.4:p.Glu519Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1555G>A
  hgvsp: ENSP00000425487.1:p.Glu519Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1555G>A
  hgvsp: ENSP00000422793.1:p.Glu519Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1555G>A
  hgvsp: ENSP00000308441.4:p.Glu519Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1168G>A
  hgvsp: ENSP00000421065.1:p.Glu390Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1555G>A
  hgvsp: ENSP00000427250.1:p.Glu519Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1555G>A
  hgvsp: ENSP00000423954.1:p.Glu519Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*282G>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu519Lys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/4-143081525-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081525
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081525
    reference: chr 4
allele count: 1
allele frequency: 8.678295582747549e-6
allele num: 115230
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1549G>T
  hgvsp: ENSP00000422793.1:p.Asp517Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.994G>T
  hgvsp: ENSP00000426207.1:p.Asp332Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*276G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1549G>T
  hgvsp: ENSP00000427250.1:p.Asp517Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1549G>T
  hgvsp: ENSP00000262992.4:p.Asp517Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1549G>T
  hgvsp: ENSP00000423954.1:p.Asp517Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1162G>T
  hgvsp: ENSP00000421065.1:p.Asp388Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1549G>T
  hgvsp: ENSP00000425487.1:p.Asp517Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1549G>T
  hgvsp: ENSP00000308441.4:p.Asp517Tyr
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30876
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43609
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp517Tyr
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-143081548-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081548
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081548
    reference: chr 4
allele count: 1
allele frequency: 8.432271991365354e-6
allele num: 118592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1526C>T
  hgvsp: ENSP00000423954.1:p.Ser509Phe
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1526C>T
  hgvsp: ENSP00000422793.1:p.Ser509Phe
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.971C>T
  hgvsp: ENSP00000426207.1:p.Ser324Phe
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1139C>T
  hgvsp: ENSP00000421065.1:p.Ser380Phe
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1526C>T
  hgvsp: ENSP00000427250.1:p.Ser509Phe
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*253C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1526C>T
  hgvsp: ENSP00000308441.4:p.Ser509Phe
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1526C>T
  hgvsp: ENSP00000425487.1:p.Ser509Phe
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1526C>T
  hgvsp: ENSP00000262992.4:p.Ser509Phe
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser509Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

4-143081564-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081564
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081564
    reference: chr 4
allele count: 1
allele frequency: 8.331250520703158e-6
allele num: 120030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1510A>T
  hgvsp: ENSP00000262992.4:p.Met504Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1510A>T
  hgvsp: ENSP00000308441.4:p.Met504Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1510A>T
  hgvsp: ENSP00000422793.1:p.Met504Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1123A>T
  hgvsp: ENSP00000421065.1:p.Met375Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1510A>T
  hgvsp: ENSP00000427250.1:p.Met504Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.955A>T
  hgvsp: ENSP00000426207.1:p.Met319Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*237A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1510A>T
  hgvsp: ENSP00000423954.1:p.Met504Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1510A>T
  hgvsp: ENSP00000425487.1:p.Met504Leu
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7151
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met504Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

4-143081574-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081574
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081574
    reference: chr 4
allele count: 2
allele frequency: 1.659117681217129e-5
allele num: 120546
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1500A>G
  hgvsp: ENST00000262992.4:c.1500A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.945A>G
  hgvsp: ENST00000511838.1:c.945A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1500A>G
  hgvsp: ENST00000510812.1:c.1500A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1113A>G
  hgvsp: ENST00000514525.1:c.1113A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1500A>G
  hgvsp: ENST00000308502.4:c.1500A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1500A>G
  hgvsp: ENST00000508116.1:c.1500A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*227A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1500A>G
  hgvsp: ENST00000509777.1:c.1500A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1500A>G
  hgvsp: ENST00000513000.1:c.1500A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16525
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln500Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-143081590-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081590
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081590
    reference: chr 4
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1484G>T
  hgvsp: ENSP00000422793.1:p.Ser495Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1097G>T
  hgvsp: ENSP00000421065.1:p.Ser366Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1484G>T
  hgvsp: ENSP00000423954.1:p.Ser495Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1484G>T
  hgvsp: ENSP00000425487.1:p.Ser495Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.929G>T
  hgvsp: ENSP00000426207.1:p.Ser310Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1484G>T
  hgvsp: ENSP00000262992.4:p.Ser495Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1484G>T
  hgvsp: ENSP00000427250.1:p.Ser495Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1484G>T
  hgvsp: ENSP00000308441.4:p.Ser495Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*211G>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser495Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

4-143081590-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081590
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081590
    reference: chr 4
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1097G>C
  hgvsp: ENSP00000421065.1:p.Ser366Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1484G>C
  hgvsp: ENSP00000308441.4:p.Ser495Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1484G>C
  hgvsp: ENSP00000262992.4:p.Ser495Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1484G>C
  hgvsp: ENSP00000423954.1:p.Ser495Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.929G>C
  hgvsp: ENSP00000426207.1:p.Ser310Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1484G>C
  hgvsp: ENSP00000427250.1:p.Ser495Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1484G>C
  hgvsp: ENSP00000422793.1:p.Ser495Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1484G>C
  hgvsp: ENSP00000425487.1:p.Ser495Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*211G>C
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16592
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31951
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47132
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser495Thr
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-143081592-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081592
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081592
    reference: chr 4
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1095G>C
  hgvsp: ENSP00000421065.1:p.Glu365Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1482G>C
  hgvsp: ENSP00000423954.1:p.Glu494Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1482G>C
  hgvsp: ENSP00000427250.1:p.Glu494Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1482G>C
  hgvsp: ENSP00000308441.4:p.Glu494Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*209G>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1482G>C
  hgvsp: ENSP00000422793.1:p.Glu494Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1482G>C
  hgvsp: ENSP00000425487.1:p.Glu494Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1482G>C
  hgvsp: ENSP00000262992.4:p.Glu494Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.927G>C
  hgvsp: ENSP00000426207.1:p.Glu309Asp
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu494Asp
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

4-143081594-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081594
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081594
    reference: chr 4
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*207G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1480G>A
  hgvsp: ENSP00000422793.1:p.Glu494Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.925G>A
  hgvsp: ENSP00000426207.1:p.Glu309Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1480G>A
  hgvsp: ENSP00000425487.1:p.Glu494Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1093G>A
  hgvsp: ENSP00000421065.1:p.Glu365Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1480G>A
  hgvsp: ENSP00000308441.4:p.Glu494Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1480G>A
  hgvsp: ENSP00000423954.1:p.Glu494Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1480G>A
  hgvsp: ENSP00000262992.4:p.Glu494Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1480G>A
  hgvsp: ENSP00000427250.1:p.Glu494Lys
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu494Lys
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

4-143081610-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081610
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081610
    reference: chr 4
allele count: 1
allele frequency: 8.27348843366317e-6
allele num: 120868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1464T>A
  hgvsp: ENST00000508116.1:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1464T>A
  hgvsp: ENST00000262992.4:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1077T>A
  hgvsp: ENST00000514525.1:c.1077T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1464T>A
  hgvsp: ENST00000510812.1:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*191T>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1464T>A
  hgvsp: ENST00000308502.4:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.909T>A
  hgvsp: ENST00000511838.1:c.909T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1464T>A
  hgvsp: ENST00000509777.1:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1464T>A
  hgvsp: ENST00000513000.1:c.1464T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro488Pro
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

4-143081611-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081611
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081611
    reference: chr 4
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1463C>T
  hgvsp: ENSP00000422793.1:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1463C>T
  hgvsp: ENSP00000425487.1:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.908C>T
  hgvsp: ENSP00000426207.1:p.Pro303Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1463C>T
  hgvsp: ENSP00000423954.1:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1463C>T
  hgvsp: ENSP00000427250.1:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*190C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1463C>T
  hgvsp: ENSP00000308441.4:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1076C>T
  hgvsp: ENSP00000421065.1:p.Pro359Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1463C>T
  hgvsp: ENSP00000262992.4:p.Pro488Leu
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro488Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP

4-143081617-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081617
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081617
    reference: chr 4
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.902C>G
  hgvsp: ENSP00000426207.1:p.Pro301Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1457C>G
  hgvsp: ENSP00000427250.1:p.Pro486Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*184C>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1457C>G
  hgvsp: ENSP00000423954.1:p.Pro486Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1457C>G
  hgvsp: ENSP00000262992.4:p.Pro486Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1070C>G
  hgvsp: ENSP00000421065.1:p.Pro357Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1457C>G
  hgvsp: ENSP00000425487.1:p.Pro486Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1457C>G
  hgvsp: ENSP00000422793.1:p.Pro486Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1457C>G
  hgvsp: ENSP00000308441.4:p.Pro486Arg
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro486Arg
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

4-143081618-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081618
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081618
    reference: chr 4
allele count: 1
allele frequency: 8.276090374906894e-6
allele num: 120830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*183C>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1456C>A
  hgvsp: ENSP00000262992.4:p.Pro486Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1456C>A
  hgvsp: ENSP00000423954.1:p.Pro486Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1456C>A
  hgvsp: ENSP00000425487.1:p.Pro486Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1456C>A
  hgvsp: ENSP00000427250.1:p.Pro486Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1456C>A
  hgvsp: ENSP00000422793.1:p.Pro486Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1069C>A
  hgvsp: ENSP00000421065.1:p.Pro357Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1456C>A
  hgvsp: ENSP00000308441.4:p.Pro486Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.901C>A
  hgvsp: ENSP00000426207.1:p.Pro301Thr
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro486Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

4-143081627-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081627
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081627
    reference: chr 4
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*174A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1447A>G
  hgvsp: ENSP00000262992.4:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1447A>G
  hgvsp: ENSP00000422793.1:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.892A>G
  hgvsp: ENSP00000426207.1:p.Lys298Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1447A>G
  hgvsp: ENSP00000427250.1:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1060A>G
  hgvsp: ENSP00000421065.1:p.Lys354Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1447A>G
  hgvsp: ENSP00000423954.1:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1447A>G
  hgvsp: ENSP00000425487.1:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1447A>G
  hgvsp: ENSP00000308441.4:p.Lys483Glu
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31940
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7162
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Lys483Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP

4-143081633-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081633
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081633
    reference: chr 4
allele count: 4
allele frequency: 3.315814778586468e-5
allele num: 120634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1441A>G
  hgvsp: ENSP00000427250.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1441A>G
  hgvsp: ENSP00000425487.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1441A>G
  hgvsp: ENSP00000308441.4:p.Ile481Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1441A>G
  hgvsp: ENSP00000262992.4:p.Ile481Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1441A>G
  hgvsp: ENSP00000422793.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1054A>G
  hgvsp: ENSP00000421065.1:p.Ile352Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1441A>G
  hgvsp: ENSP00000423954.1:p.Ile481Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.886A>G
  hgvsp: ENSP00000426207.1:p.Ile296Val
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*168A>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile481Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-143081641-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081641
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081641
    reference: chr 4
allele count: 3
allele frequency: 2.491280518186348e-5
allele num: 120420
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1433C>T
  hgvsp: ENSP00000423954.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1433C>T
  hgvsp: ENSP00000427250.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1046C>T
  hgvsp: ENSP00000421065.1:p.Pro349Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1433C>T
  hgvsp: ENSP00000262992.4:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.878C>T
  hgvsp: ENSP00000426207.1:p.Pro293Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1433C>T
  hgvsp: ENSP00000308441.4:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1433C>T
  hgvsp: ENSP00000422793.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1433C>T
  hgvsp: ENSP00000425487.1:p.Pro478Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*160C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro478Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

4-143081642-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081642
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081642
    reference: chr 4
allele count: 3
allele frequency: 2.492522432701894e-5
allele num: 120360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1432C>A
  hgvsp: ENSP00000423954.1:p.Pro478Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.877C>A
  hgvsp: ENSP00000426207.1:p.Pro293Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1432C>A
  hgvsp: ENSP00000427250.1:p.Pro478Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1432C>A
  hgvsp: ENSP00000422793.1:p.Pro478Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1432C>A
  hgvsp: ENSP00000308441.4:p.Pro478Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1432C>A
  hgvsp: ENSP00000425487.1:p.Pro478Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1045C>A
  hgvsp: ENSP00000421065.1:p.Pro349Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1432C>A
  hgvsp: ENSP00000262992.4:p.Pro478Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*159C>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro478Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

4-143081652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081652
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081652
    reference: chr 4
allele count: 63
allele frequency: 5.251225285900044e-4
allele num: 119972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1422C>T
  hgvsp: ENST00000508116.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1422C>T
  hgvsp: ENST00000262992.4:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1422C>T
  hgvsp: ENST00000513000.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1422C>T
  hgvsp: ENST00000509777.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*149C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1422C>T
  hgvsp: ENST00000510812.1:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1035C>T
  hgvsp: ENST00000514525.1:c.1035C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1422C>T
  hgvsp: ENST00000308502.4:c.1422C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.867C>T
  hgvsp: ENST00000511838.1:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 16524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31657
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 6998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr474Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

4-143081665-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081665
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081665
    reference: chr 4
allele count: 1
allele frequency: 8.392923087252828e-6
allele num: 119148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*136T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1022T>C
  hgvsp: ENSP00000421065.1:p.Leu341Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.854T>C
  hgvsp: ENSP00000426207.1:p.Leu285Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1409T>C
  hgvsp: ENSP00000422793.1:p.Leu470Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1409T>C
  hgvsp: ENSP00000425487.1:p.Leu470Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1409T>C
  hgvsp: ENSP00000262992.4:p.Leu470Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1409T>C
  hgvsp: ENSP00000427250.1:p.Leu470Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1409T>C
  hgvsp: ENSP00000423954.1:p.Leu470Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1409T>C
  hgvsp: ENSP00000308441.4:p.Leu470Pro
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31182
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu470Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

4-143081676-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081676
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081676
    reference: chr 4
allele count: 1
allele frequency: 8.486226853816256e-6
allele num: 117838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1398C>A
  hgvsp: ENST00000508116.1:c.1398C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1011C>A
  hgvsp: ENST00000514525.1:c.1011C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1398C>A
  hgvsp: ENST00000509777.1:c.1398C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1398C>A
  hgvsp: ENST00000510812.1:c.1398C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*125C>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1398C>A
  hgvsp: ENST00000262992.4:c.1398C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1398C>A
  hgvsp: ENST00000513000.1:c.1398C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.843C>A
  hgvsp: ENST00000511838.1:c.843C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1398C>A
  hgvsp: ENST00000308502.4:c.1398C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val466Val
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

4-143081678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081678
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081678
    reference: chr 4
allele count: 1
allele frequency: 8.520790729379687e-6
allele num: 117360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1396G>A
  hgvsp: ENSP00000308441.4:p.Val466Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*123G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1396G>A
  hgvsp: ENSP00000262992.4:p.Val466Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1396G>A
  hgvsp: ENSP00000427250.1:p.Val466Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1396G>A
  hgvsp: ENSP00000423954.1:p.Val466Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1396G>A
  hgvsp: ENSP00000422793.1:p.Val466Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1009G>A
  hgvsp: ENSP00000421065.1:p.Val337Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.841G>A
  hgvsp: ENSP00000426207.1:p.Val281Ile
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1396G>A
  hgvsp: ENSP00000425487.1:p.Val466Ile
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val466Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

4-143081687-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081687
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081687
    reference: chr 4
allele count: 1
allele frequency: 8.694593701636322e-6
allele num: 115014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1387G>C
  hgvsp: ENSP00000423954.1:p.Asp463His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.832G>C
  hgvsp: ENSP00000426207.1:p.Asp278His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.1000G>C
  hgvsp: ENSP00000421065.1:p.Asp334His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1387G>C
  hgvsp: ENSP00000422793.1:p.Asp463His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1387G>C
  hgvsp: ENSP00000427250.1:p.Asp463His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1387G>C
  hgvsp: ENSP00000308441.4:p.Asp463His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1387G>C
  hgvsp: ENSP00000262992.4:p.Asp463His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1387G>C
  hgvsp: ENSP00000425487.1:p.Asp463His
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*114G>C
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16087
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp463His
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

4-143081690-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081690
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081690
    reference: chr 4
allele count: 2
allele frequency: 1.756635691323976e-5
allele num: 113854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1384A>G
  hgvsp: ENSP00000308441.4:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1384A>G
  hgvsp: ENSP00000423954.1:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1384A>G
  hgvsp: ENSP00000262992.4:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1384A>G
  hgvsp: ENSP00000422793.1:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1384A>G
  hgvsp: ENSP00000427250.1:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*111A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.829A>G
  hgvsp: ENSP00000426207.1:p.Lys277Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.997A>G
  hgvsp: ENSP00000421065.1:p.Lys333Glu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1384A>G
  hgvsp: ENSP00000425487.1:p.Lys462Glu
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27440
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys462Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

4-143081690-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081690
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081690
    reference: chr 4
allele count: 1
allele frequency: 8.783178456619882e-6
allele num: 113854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1384A>C
  hgvsp: ENSP00000427250.1:p.Lys462Gln
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*111A>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1384A>C
  hgvsp: ENSP00000422793.1:p.Lys462Gln
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.829A>C
  hgvsp: ENSP00000426207.1:p.Lys277Gln
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1384A>C
  hgvsp: ENSP00000423954.1:p.Lys462Gln
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1384A>C
  hgvsp: ENSP00000425487.1:p.Lys462Gln
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1384A>C
  hgvsp: ENSP00000308441.4:p.Lys462Gln
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.997A>C
  hgvsp: ENSP00000421065.1:p.Lys333Gln
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1384A>C
  hgvsp: ENSP00000262992.4:p.Lys462Gln
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys462Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

4-143081691-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081691
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081691
    reference: chr 4
allele count: 1
allele frequency: 8.786728525235485e-6
allele num: 113808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1383C>T
  hgvsp: ENST00000308502.4:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1383C>T
  hgvsp: ENST00000262992.4:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.828C>T
  hgvsp: ENST00000511838.1:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1383C>T
  hgvsp: ENST00000513000.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1383C>T
  hgvsp: ENST00000508116.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.996C>T
  hgvsp: ENST00000514525.1:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1383C>T
  hgvsp: ENST00000510812.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1383C>T
  hgvsp: ENST00000509777.1:c.1383C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5772
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe461Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

4-143081693-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081693
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081693
    reference: chr 4
allele count: 17
allele frequency: 1.507760532150776e-4
allele num: 112750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.826T>C
  hgvsp: ENSP00000426207.1:p.Phe276Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1381T>C
  hgvsp: ENSP00000423954.1:p.Phe461Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1381T>C
  hgvsp: ENSP00000425487.1:p.Phe461Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1381T>C
  hgvsp: ENSP00000262992.4:p.Phe461Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.994T>C
  hgvsp: ENSP00000421065.1:p.Phe332Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1381T>C
  hgvsp: ENSP00000308441.4:p.Phe461Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*108T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1381T>C
  hgvsp: ENSP00000427250.1:p.Phe461Leu
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1381T>C
  hgvsp: ENSP00000422793.1:p.Phe461Leu
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26552
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe461Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

4-143081698-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081698
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081698
    reference: chr 4
allele count: 1
allele frequency: 9.006412565746812e-6
allele num: 111032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.821A>C
  hgvsp: ENSP00000426207.1:p.His274Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1376A>C
  hgvsp: ENSP00000423954.1:p.His459Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1376A>C
  hgvsp: ENSP00000425487.1:p.His459Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*103A>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1376A>C
  hgvsp: ENSP00000308441.4:p.His459Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1376A>C
  hgvsp: ENSP00000427250.1:p.His459Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.989A>C
  hgvsp: ENSP00000421065.1:p.His330Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1376A>C
  hgvsp: ENSP00000422793.1:p.His459Pro
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1376A>C
  hgvsp: ENSP00000262992.4:p.His459Pro
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His459Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

4-143081717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081717
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081717
    reference: chr 4
allele count: 1
allele frequency: 1.013972541623573e-5
allele num: 98622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*87-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1360-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1360-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1360-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1360-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1360-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.805-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.973-3C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1360-3C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15194
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1360-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/4-143081756-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081756
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081756
    reference: chr 4
allele count: 13
allele frequency: 1.927067892084198e-4
allele num: 67460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.973-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*87-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1360-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1360-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1360-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.805-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1360-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1360-42T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1360-42T>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20373
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21265
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7246
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4866
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7535
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

4-143081759-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081759
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081759
    reference: chr 4
allele count: 0
allele frequency: 0.0e0
allele num: 65354
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1360-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1360-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.805-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*87-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.973-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1360-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1360-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1360-45A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1360-45A>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21234
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20454
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

4-143081762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081762
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081762
    reference: chr 4
allele count: 1
allele frequency: 1.631587534671235e-5
allele num: 61290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.973-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1360-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1360-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1360-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*87-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1360-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1360-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1360-48C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.805-48C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6988
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5238
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17589
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5914
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

4-143081763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143081763
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143081763
    reference: chr 4
allele count: 56
allele frequency: 9.103026756396502e-4
allele num: 61518
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1360-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*87-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1360-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1360-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1360-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.805-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1360-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1360-49G>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.973-49G>A
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19152
  bin: 1.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5629
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22617
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7709
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4905
  bin: 2.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

4-143094734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094734
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094734
    reference: chr 4
allele count: 1
allele frequency: 8.454371755634839e-6
allele num: 118282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+51C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+51C>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2918
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/4-143094738-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094738
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094738
    reference: chr 4
allele count: 1
allele frequency: 8.442095665828085e-6
allele num: 118454
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+47T>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+47T>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4595
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

4-143094739-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094739
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094739
    reference: chr 4
allele count: 7
allele frequency: 5.908569113377001e-5
allele num: 118472
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+46A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+46A>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16329
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

4-143094741-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094741
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094741
    reference: chr 4
allele count: 1
allele frequency: 8.438818565400844e-6
allele num: 118500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+44A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+44A>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7118
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11862
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2962
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

4-143094746-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094746
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094745
    reference: chr 4
allele count: 3
allele frequency: 2.529510961214165e-5
allele num: 118600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+38delA
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+38delA
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3259
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: AT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/4-143094758-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094758
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094758
    reference: chr 4
allele count: 4
allele frequency: 3.360610286828088e-5
allele num: 119026
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+27G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+27G>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12809
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7199
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10735
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4751
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

4-143094759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094759
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094759
    reference: chr 4
allele count: 2
allele frequency: 1.678415575696542e-5
allele num: 119160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+26T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+26T>C
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12862
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16345
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 17406
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

4-143094767-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094767
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094767
    reference: chr 4
allele count: 4
allele frequency: 3.340236488743403e-5
allele num: 119752
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+18A>G
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+18A>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4838
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

4-143094770-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094770
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094770
    reference: chr 4
allele count: 6
allele frequency: 5.000333355557037e-5
allele num: 119992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1359+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1359+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1359+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*86+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1359+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.972+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.804+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1359+15A>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1359+15A>T
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6548
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ

4-143094801-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094801
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094801
    reference: chr 4
allele count: 1
allele frequency: 8.268562923763849e-6
allele num: 120940
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1343A>C
  hgvsp: ENSP00000427250.1:p.Lys448Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1343A>C
  hgvsp: ENSP00000423954.1:p.Lys448Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1343A>C
  hgvsp: ENSP00000308441.4:p.Lys448Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1343A>C
  hgvsp: ENSP00000422793.1:p.Lys448Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1343A>C
  hgvsp: ENSP00000262992.4:p.Lys448Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*70A>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.788A>C
  hgvsp: ENSP00000426207.1:p.Lys263Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.956A>C
  hgvsp: ENSP00000421065.1:p.Lys319Thr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1343A>C
  hgvsp: ENSP00000425487.1:p.Lys448Thr
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys448Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

4-143094804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094804
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094804
    reference: chr 4
allele count: 1
allele frequency: 8.267059076404159e-6
allele num: 120962
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.953T>C
  hgvsp: ENSP00000421065.1:p.Leu318Ser
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1340T>C
  hgvsp: ENSP00000262992.4:p.Leu447Ser
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1340T>C
  hgvsp: ENSP00000427250.1:p.Leu447Ser
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1340T>C
  hgvsp: ENSP00000423954.1:p.Leu447Ser
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1340T>C
  hgvsp: ENSP00000425487.1:p.Leu447Ser
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1340T>C
  hgvsp: ENSP00000422793.1:p.Leu447Ser
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.785T>C
  hgvsp: ENSP00000426207.1:p.Leu262Ser
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*67T>C
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1340T>C
  hgvsp: ENSP00000308441.4:p.Leu447Ser
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13618
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4973
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu447Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

4-143094811-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094811
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094811
    reference: chr 4
allele count: 1
allele frequency: 8.26255081468751e-6
allele num: 121028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1333A>G
  hgvsp: ENSP00000427250.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1333A>G
  hgvsp: ENSP00000308441.4:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.778A>G
  hgvsp: ENSP00000426207.1:p.Asn260Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.946A>G
  hgvsp: ENSP00000421065.1:p.Asn316Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1333A>G
  hgvsp: ENSP00000422793.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1333A>G
  hgvsp: ENSP00000425487.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1333A>G
  hgvsp: ENSP00000262992.4:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1333A>G
  hgvsp: ENSP00000423954.1:p.Asn445Asp
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*60A>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn445Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

4-143094822-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094822
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094822
    reference: chr 4
allele count: 13
allele frequency: 1.073599365750529e-4
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.767A>C
  hgvsp: ENSP00000426207.1:p.Asp256Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1322A>C
  hgvsp: ENSP00000262992.4:p.Asp441Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1322A>C
  hgvsp: ENSP00000427250.1:p.Asp441Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1322A>C
  hgvsp: ENSP00000423954.1:p.Asp441Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1322A>C
  hgvsp: ENSP00000422793.1:p.Asp441Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1322A>C
  hgvsp: ENSP00000308441.4:p.Asp441Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1322A>C
  hgvsp: ENSP00000425487.1:p.Asp441Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.935A>C
  hgvsp: ENSP00000421065.1:p.Asp312Ala
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*49A>C
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13661
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp441Ala
num of homozygotes: 1
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

4-143094831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094831
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094831
    reference: chr 4
allele count: 2
allele frequency: 1.651364026686043e-5
allele num: 121112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1313A>G
  hgvsp: ENSP00000427250.1:p.His438Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1313A>G
  hgvsp: ENSP00000423954.1:p.His438Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.926A>G
  hgvsp: ENSP00000421065.1:p.His309Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1313A>G
  hgvsp: ENSP00000422793.1:p.His438Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1313A>G
  hgvsp: ENSP00000425487.1:p.His438Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.758A>G
  hgvsp: ENSP00000426207.1:p.His253Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1313A>G
  hgvsp: ENSP00000262992.4:p.His438Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1313A>G
  hgvsp: ENSP00000308441.4:p.His438Arg
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His438Arg
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

4-143094835-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094835
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094835
    reference: chr 4
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1309C>A
  hgvsp: ENSP00000423954.1:p.Gln437Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1309C>A
  hgvsp: ENSP00000427250.1:p.Gln437Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1309C>A
  hgvsp: ENSP00000308441.4:p.Gln437Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*36C>A
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.754C>A
  hgvsp: ENSP00000426207.1:p.Gln252Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1309C>A
  hgvsp: ENSP00000422793.1:p.Gln437Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1309C>A
  hgvsp: ENSP00000262992.4:p.Gln437Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.922C>A
  hgvsp: ENSP00000421065.1:p.Gln308Lys
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1309C>A
  hgvsp: ENSP00000425487.1:p.Gln437Lys
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln437Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/4-143094851-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094851
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094851
    reference: chr 4
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.906G>T
  hgvsp: ENST00000514525.1:c.906G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*20G>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1293G>T
  hgvsp: ENST00000509777.1:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1293G>T
  hgvsp: ENST00000513000.1:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1293G>T
  hgvsp: ENST00000508116.1:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.738G>T
  hgvsp: ENST00000511838.1:c.738G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1293G>T
  hgvsp: ENST00000308502.4:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1293G>T
  hgvsp: ENST00000262992.4:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1293G>T
  hgvsp: ENST00000510812.1:c.1293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu431Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

4-143094851-CAGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094851
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094848
    reference: chr 4
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*17_*19delACT
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1290_1292delACT
  hgvsp: ENSP00000427250.1:p.Leu432del
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1290_1292delACT
  hgvsp: ENSP00000422793.1:p.Leu432del
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.903_905delACT
  hgvsp: ENSP00000421065.1:p.Leu303del
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1290_1292delACT
  hgvsp: ENSP00000423954.1:p.Leu432del
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.735_737delACT
  hgvsp: ENSP00000426207.1:p.Leu247del
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1290_1292delACT
  hgvsp: ENSP00000425487.1:p.Leu432del
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1290_1292delACT
  hgvsp: ENSP00000262992.4:p.Leu432del
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1290_1292delACT
  hgvsp: ENSP00000308441.4:p.Leu432del
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4972
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19184
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu432del
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CAGT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

4-143094856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094856
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094856
    reference: chr 4
allele count: 1
allele frequency: 8.252459232851389e-6
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1288C>T
  hgvsp: ENST00000510812.1:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1288C>T
  hgvsp: ENST00000508116.1:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1288C>T
  hgvsp: ENST00000509777.1:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1288C>T
  hgvsp: ENST00000308502.4:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*15C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1288C>T
  hgvsp: ENST00000262992.4:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.733C>T
  hgvsp: ENST00000511838.1:c.733C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.901C>T
  hgvsp: ENST00000514525.1:c.901C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1288C>T
  hgvsp: ENST00000513000.1:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu430Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

4-143094865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143094865
    reference: chr 4
  end: Position
    type: ExactPosition
    position: 143094865
    reference: chr 4
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423954
  ensembl transcript: ENST00000508116
  gene symbol: INPP4B
  hgvsc: ENST00000508116.1:c.1279C>T
  hgvsp: ENSP00000423954.1:p.His427Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000426207
  ensembl transcript: ENST00000511838
  gene symbol: INPP4B
  hgvsc: ENST00000511838.1:c.724C>T
  hgvsp: ENSP00000426207.1:p.His242Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000308441
  ensembl transcript: ENST00000308502
  gene symbol: INPP4B
  hgvsc: ENST00000308502.4:c.1279C>T
  hgvsp: ENSP00000308441.4:p.His427Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000421065
  ensembl transcript: ENST00000514525
  gene symbol: INPP4B
  hgvsc: ENST00000514525.1:c.892C>T
  hgvsp: ENSP00000421065.1:p.His298Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000262992
  ensembl transcript: ENST00000262992
  gene symbol: INPP4B
  hgvsc: ENST00000262992.4:c.1279C>T
  hgvsp: ENSP00000262992.4:p.His427Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000423771
  ensembl transcript: ENST00000512630
  gene symbol: INPP4B
  hgvsc: ENST00000512630.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000422793
  ensembl transcript: ENST00000509777
  gene symbol: INPP4B
  hgvsc: ENST00000509777.1:c.1279C>T
  hgvsp: ENSP00000422793.1:p.His427Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000427250
  ensembl transcript: ENST00000510812
  gene symbol: INPP4B
  hgvsc: ENST00000510812.1:c.1279C>T
  hgvsp: ENSP00000427250.1:p.His427Tyr
  variant of: http://identifiers.org/hgnc/6075
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000109452
  ensembl protein: ENSP00000425487
  ensembl transcript: ENST00000513000
  gene symbol: INPP4B
  hgvsc: ENST00000513000.1:c.1279C>T
  hgvsp: ENSP00000425487.1:p.His427Tyr
  variant of: http://identifiers.org/hgnc/6075
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His427Tyr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49210
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.16e0

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.404e1

FS
type: SiteQuality
SIO_000300: 1.267e0

VQSLOD
type: SiteQuality
SIO_000300: 9.340000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

DP
type: SiteQuality
SIO_000300: 3.935002e6

GenotypeQuality
all individuals: 5824
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49209
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1077
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500330072615976e-5
allele num: 66652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

DP
type: SiteQuality
SIO_000300: 3.93443e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

FS
type: SiteQuality
SIO_000300: 1.335e0

VQSLOD
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.218e1

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49206
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 5.949e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 3.929683e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.383e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5527
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

VQSLOD
type: SiteQuality
SIO_000300: -1.745e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

QD
type: SiteQuality
SIO_000300: 1.185e1

DP
type: SiteQuality
SIO_000300: 3.928723e6

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49204
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.742e0

MQRankSum
type: SiteQuality
SIO_000300: 9.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.87e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

DP
type: SiteQuality
SIO_000300: 3.927859e6

VQSLOD
type: SiteQuality
SIO_000300: -7.809e-1

FS
type: SiteQuality
SIO_000300: 9.269e0

QD
type: SiteQuality
SIO_000300: 1.045e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.09e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66608
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.12369871402327e-5
allele num: 16330
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

QD
type: SiteQuality
SIO_000300: 1.15e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

FS
type: SiteQuality
SIO_000300: 9.493e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 3.927392e6

VQSLOD
type: SiteQuality
SIO_000300: 4.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.804e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.01e-1

DP
type: SiteQuality
SIO_000300: 3.914953e6

VQSLOD
type: SiteQuality
SIO_000300: 6.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.378e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.904852e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

QD
type: SiteQuality
SIO_000300: 1.313e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

FS
type: SiteQuality
SIO_000300: 7.258e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.448e0

VQSLOD
type: SiteQuality
SIO_000300: -3.304e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 232
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.568081e6

FS
type: SiteQuality
SIO_000300: 1.329e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.88e0

VQSLOD
type: SiteQuality
SIO_000300: -6.691e-1

QD
type: SiteQuality
SIO_000300: 1.676e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.206e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.697e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.52e-1

BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.28e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.568426e6

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.25e-3
allele num: 800
num of homozygotes: 0

Latino
type: Population
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allele frequency: 1.771479185119575e-4
allele num: 11290
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.24200243438095e-5
allele num: 64082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.572713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

FS
type: SiteQuality
SIO_000300: 1.231e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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SIO_000300: 1.365e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.5600624024961e-5
allele num: 64100
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
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Other
type: Population
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allele num: 800
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
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allele num: 800
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 9534
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6584
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African
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allele frequency: 9.769441187964049e-5
allele num: 10236
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East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64108
num of homozygotes: 0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 3.33e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.826e0

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.2e-2

BaseQRankSum
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SIO_000300: -2.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

QD
type: SiteQuality
SIO_000300: 1.245e1

DP
type: SiteQuality
SIO_000300: 1.575431e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558166349839509e-5
allele num: 64178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 2.767e0

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

QD
type: SiteQuality
SIO_000300: 1.371e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.137e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

DP
type: SiteQuality
SIO_000300: 1.579276e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558166349839509e-5
allele num: 64178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.679457182966776e-4
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.759906304899473e-5
allele num: 10246
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.767e0

QD
type: SiteQuality
SIO_000300: 1.371e1

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 1.579276e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64236
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76772140710624e-4
allele num: 11314
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 2.956e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.901e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.580123e6

QD
type: SiteQuality
SIO_000300: 1.06e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.832361773538245e-5
allele num: 11322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64342
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.246e1

FS
type: SiteQuality
SIO_000300: 2.858e0

MQRankSum
type: SiteQuality
SIO_000300: 8.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQ
type: SiteQuality
SIO_000300: 6.021e1

DP
type: SiteQuality
SIO_000300: 1.584461e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.31e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.906305664410402e-5
allele num: 11228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.633e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 2.984e0

VQSLOD
type: SiteQuality
SIO_000300: -9.837e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.81057268722467e-5
allele num: 11350
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64796
num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.98e-1

ReadPosRankSum
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InbreedingCoeff
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FS
type: SiteQuality
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MQRankSum
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DP
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.959e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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East Asian
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 65030
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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DP
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FS
type: SiteQuality
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QD
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5194797301404e-5
allele num: 65812
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.707e0

FS
type: SiteQuality
SIO_000300: 1.1923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.092e0

QD
type: SiteQuality
SIO_000300: 1.066e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.478e0

MQRankSum
type: SiteQuality
SIO_000300: -1.092e0

DP
type: SiteQuality
SIO_000300: 1.63821e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.324310650139134e-5
allele num: 15812
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.385e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.648e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -1.291e0

VQSLOD
type: SiteQuality
SIO_000300: -6.447000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.2e1

DP
type: SiteQuality
SIO_000300: 1.654463e6

GenotypeQuality
all individuals: 1494
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

DP
type: SiteQuality
SIO_000300: 1.660265e6

MQ
type: SiteQuality
SIO_000300: 5.929e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.77e-1

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47132
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.996e0

FS
type: SiteQuality
SIO_000300: 1.064e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

DP
type: SiteQuality
SIO_000300: 1.664583e6

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

QD
type: SiteQuality
SIO_000300: 1.231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 1587
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GenotypeQuality
all individuals: 231
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GenotypeQuality
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GenotypeQuality
all individuals: 252
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.664583e6

QD
type: SiteQuality
SIO_000300: 1.231e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.996e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

FS
type: SiteQuality
SIO_000300: 1.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

GenotypeQuality
all individuals: 7190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 252
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

DP
type: SiteQuality
SIO_000300: 1.664656e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.073e0

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

QD
type: SiteQuality
SIO_000300: 1.526e1

MQ
type: SiteQuality
SIO_000300: 5.989e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

FS
type: SiteQuality
SIO_000300: 5.165e0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

DP
type: SiteQuality
SIO_000300: 1.664771e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

VQSLOD
type: SiteQuality
SIO_000300: 8.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503307276007216e-5
allele num: 66520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.448e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.223e0

FS
type: SiteQuality
SIO_000300: 4.059e0

DP
type: SiteQuality
SIO_000300: 1.664539e6

GenotypeQuality
all individuals: 1487
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 1583
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GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.621e0

QD
type: SiteQuality
SIO_000300: 1.477e1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e-1

FS
type: SiteQuality
SIO_000300: 3.007e0

DP
type: SiteQuality
SIO_000300: 1.664388e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.191e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

DP
type: SiteQuality
SIO_000300: 1.663984e6

FS
type: SiteQuality
SIO_000300: 4.555e0

QD
type: SiteQuality
SIO_000300: 7.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

DP
type: SiteQuality
SIO_000300: 1.663795e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.195e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.78e0

VQSLOD
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.495e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

FS
type: SiteQuality
SIO_000300: 4.006e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-2

DP
type: SiteQuality
SIO_000300: 1.662204e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506114826194349e-5
allele num: 66396
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.487561032318065e-4
allele num: 8602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.660455e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 1.9409e1

VQSLOD
type: SiteQuality
SIO_000300: -2.652e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017501508750754e-5
allele num: 66280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 3.429e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

QD
type: SiteQuality
SIO_000300: 1.199e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.656653e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1468
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018776791644026e-5
allele num: 66252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.495e-1

DP
type: SiteQuality
SIO_000300: 1.65537e6

FS
type: SiteQuality
SIO_000300: 1.1343e1

QD
type: SiteQuality
SIO_000300: 1.418e1

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 62

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 8.930733833858077e-4
allele num: 66064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
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Latino
type: Population
allele count: 3
allele frequency: 2.668564312399929e-4
allele num: 11242
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.402e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 1.646938e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 67
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GenotypeQuality
all individuals: 636
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.712509712509713e-5
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65618
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 1.627566e6

FS
type: SiteQuality
SIO_000300: 1.671e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.594e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele num: 10998
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Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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VQSLOD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 64618
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VQSLOD
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FS
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QD
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DP
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
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MQRankSum
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BaseQRankSum
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QD
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 15510
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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African
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Other
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DP
type: SiteQuality
SIO_000300: 1.521343e6

MQRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Latino
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European (Non-Finnish)
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Other
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East Asian
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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DP
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VQSLOD
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 7990
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South Asian
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European (Non-Finnish)
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Other
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Latino
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African
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European (Finnish)
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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DP
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ReadPosRankSum
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MQRankSum
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54004
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.431629013079666e-5
allele num: 13456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

DP
type: SiteQuality
SIO_000300: 1.195733e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.78e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

GenotypeQuality
all individuals: 6035
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 9.75e1
variant carriers: 12

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 3.26335255085391e-4
allele num: 36772
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.495662578522285e-4
allele num: 6686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4914
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

DP
type: SiteQuality
SIO_000300: 7.43166e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.53e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeQuality
all individuals: 168
bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4744
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.037e1

DP
type: SiteQuality
SIO_000300: 7.36569e5

MQ
type: SiteQuality
SIO_000300: 5.763e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

VQSLOD
type: SiteQuality
SIO_000300: -2.094e0

GenotypeQuality
all individuals: 1366
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7688
bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4906
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variant carriers: 0

GenotypeQuality
all individuals: 132
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7552
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.99060948621329e-5
allele num: 33438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.27708e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

FS
type: SiteQuality
SIO_000300: 1.379e0

MQRankSum
type: SiteQuality
SIO_000300: -2.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

QD
type: SiteQuality
SIO_000300: 1.233e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.76e-1

GenotypeQuality
all individuals: 405
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 17895
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1243
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1384
bin: 9.75e1
variant carriers: 60

GenotypeQuality
all individuals: 226
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variant carriers: 1

GenotypeQuality
all individuals: 557
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variant carriers: 1

GenotypeQuality
all individuals: 193
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5909
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variant carriers: 0

GenotypeQuality
all individuals: 3234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 9.25e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 6.01829561868079e-4
allele num: 8308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 1.488892859269847e-3
allele num: 33582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3986
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.0e-3
allele num: 500
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.86e-2

QD
type: SiteQuality
SIO_000300: 1.194e1

FS
type: SiteQuality
SIO_000300: 1.285e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 7.27371e5

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2023
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2110
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524343770007012e-5
allele num: 65602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.130686e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.146e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

QD
type: SiteQuality
SIO_000300: 3.099e1

GenotypeQuality
all individuals: 3240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 7.5e0
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GenotypeQuality
all individuals: 1824
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
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GenotypeQuality
all individuals: 2953
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11712
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65706
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.175917215428034e-4
allele num: 8504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15258
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 2.136811e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.627e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.288e0

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 12413
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 148
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4602
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.856023506366307e-4
allele num: 10210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11334
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 2.13889e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeQuality
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16330
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1362
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
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GenotypeQuality
all individuals: 5976
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GenotypeQuality
all individuals: 806
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1261
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 632
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GenotypeQuality
all individuals: 3246
bin: 9.25e1
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GenotypeQuality
all individuals: 4115
bin: 8.25e1
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GenotypeQuality
all individuals: 1307
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521884702014975e-5
allele num: 65708
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

DP
type: SiteQuality
SIO_000300: 2.143987e6

VQSLOD
type: SiteQuality
SIO_000300: -3.027e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4657
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16336
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.563570537588609e-5
allele num: 65738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15352
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.201e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 2.157553e6

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16346
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 1
allele frequency: 6.417661404184315e-5
allele num: 15582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.554425383330803e-5
allele num: 65870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.188592e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.103e1

FS
type: SiteQuality
SIO_000300: 1.878e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 346
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
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variant carriers: 0

GenotypeQuality
all individuals: 4780
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.954652071931196e-4
allele num: 10232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.190728e6

FS
type: SiteQuality
SIO_000300: 2.064e0

MQ
type: SiteQuality
SIO_000300: 5.872e1

VQSLOD
type: SiteQuality
SIO_000300: -2.314e0

MQRankSum
type: SiteQuality
SIO_000300: -1.641e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.979e0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 2178
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variant carriers: 0

GenotypeQuality
all individuals: 6499
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.522987493394399e-4
allele num: 11354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.205815e6

MQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

FS
type: SiteQuality
SIO_000300: 1.066e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.213e0

QD
type: SiteQuality
SIO_000300: 1.166e1

GenotypeQuality
all individuals: 18551
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3171
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 170
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GenotypeQuality
all individuals: 16359
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variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
all individuals: 3315
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.069197980591917e-5
allele num: 66158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

FS
type: SiteQuality
SIO_000300: 1.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.32e-1

DP
type: SiteQuality
SIO_000300: 2.209874e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.204e1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 4391
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variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 16389
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2227
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.899e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 9.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.147e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -2.307e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 5.471e0

DP
type: SiteQuality
SIO_000300: 2.226746e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.336e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

FS
type: SiteQuality
SIO_000300: 2.603e0

DP
type: SiteQuality
SIO_000300: 2.227201e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 148
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.534e1

MQ
type: SiteQuality
SIO_000300: 5.937e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.56e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

DP
type: SiteQuality
SIO_000300: 2.227934e6

GenotypeQuality
all individuals: 19156
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 2229
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GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.800828381055286e-4
allele num: 66636
num of homozygotes: 1

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
type: SiteQuality
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DP
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SIO_000300: 2.229397e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

QD
type: SiteQuality
SIO_000300: 1.523e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.5e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.000930288389401e-5
allele num: 66646
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.454e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-1

QD
type: SiteQuality
SIO_000300: 6.69e0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.24e-2

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.504e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.573e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

QD
type: SiteQuality
SIO_000300: 1.499e1

FS
type: SiteQuality
SIO_000300: 9.611000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.493e0

DP
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SIO_000300: 2.229334e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.198e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 906
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FS
type: SiteQuality
SIO_000300: 5.94e-1

QD
type: SiteQuality
SIO_000300: 1.579e1

DP
type: SiteQuality
SIO_000300: 2.229615e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

DP
type: SiteQuality
SIO_000300: 2.229615e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.579e1

BaseQRankSum
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SIO_000300: -1.589e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele num: 8630
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Other
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African
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allele frequency: 0.0e0
allele num: 10404
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11450
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.979e1

DP
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