5-131607090-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607090
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607090
    reference: chr 5
allele count: 1
allele frequency: 8.576182226719954e-6
allele num: 116602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.217G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.608G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.344G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.601G>A
  hgvsp: ENSP00000253754.3:p.Val201Met
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.601G>A
  hgvsp: ENSP00000368303.3:p.Val201Met
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5945C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5945C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23781C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5945C>T
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9952
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2650
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val201Met
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

5-131607095-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607095
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607095
    reference: chr 5
allele count: 2
allele frequency: 1.713972302207596e-5
allele num: 116688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23776G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.349C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.606C>G
  hgvsp: ENST00000379018.3:c.606C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5940G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.222C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.613C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.606C>G
  hgvsp: ENST00000253754.3:c.606C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5940G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5940G>C
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ala202Ala
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-131607095-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607095
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607095
    reference: chr 5
allele count: 1
allele frequency: 8.569861511037982e-6
allele num: 116688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5940G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.222C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5940G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.606C>T
  hgvsp: ENST00000253754.3:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23776G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.349C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.606C>T
  hgvsp: ENST00000379018.3:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.613C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5940G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15823
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41871
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala202Ala
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

5-131607096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607096
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607096
    reference: chr 5
allele count: 290
allele frequency: 2.485600658255622e-3
allele num: 116672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.350G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.607G>A
  hgvsp: ENSP00000253754.3:p.Ala203Thr
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23775C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.614G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5939C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.223G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.607G>A
  hgvsp: ENSP00000368303.3:p.Ala203Thr
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5939C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5939C>T
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 27567
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 15813
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9899
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 5.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41875
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Ala203Thr
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

5-131607098-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607098
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607098
    reference: chr 5
allele count: 4
allele frequency: 3.427415899782359e-5
allele num: 116706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.225G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5937C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.352G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5937C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.616G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.609G>A
  hgvsp: ENST00000379018.3:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.609G>A
  hgvsp: ENST00000253754.3:c.609G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5937C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23773C>T
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9949
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala203Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

5-131607106-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607106
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607106
    reference: chr 5
allele count: 1
allele frequency: 8.565750702391558e-6
allele num: 116744
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.360A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.233A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5929T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5929T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.624A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.617A>G
  hgvsp: ENSP00000368303.3:p.Lys206Arg
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23765T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.617A>G
  hgvsp: ENSP00000253754.3:p.Lys206Arg
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5929T>C
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys206Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

5-131607113-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607113
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607113
    reference: chr 5
allele count: 12
allele frequency: 1.027819651911745e-4
allele num: 116752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23758T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.624A>G
  hgvsp: ENST00000379018.3:c.624A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.624A>G
  hgvsp: ENST00000253754.3:c.624A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5922T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.240A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.367A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.631A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5922T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5922T>C
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27885
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser208Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-131607113-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607113
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607113
    reference: chr 5
allele count: 22
allele frequency: 1.884336028504865e-4
allele num: 116752
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5922T>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.240A>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5922T>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.624A>T
  hgvsp: ENST00000379018.3:c.624A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.631A>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.624A>T
  hgvsp: ENST00000253754.3:c.624A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5922T>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23758T>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.367A>T
  variant of: http://identifiers.org/hgnc/16501
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27885
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser208Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

5-131607124-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607124
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607124
    reference: chr 5
allele count: 2
allele frequency: 1.713296897219319e-5
allele num: 116734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.635G>A
  hgvsp: ENSP00000368303.3:p.Arg212His
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.642G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.635G>A
  hgvsp: ENSP00000253754.3:p.Arg212His
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5911C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.378G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.251G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23747C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5911C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5911C>T
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2762
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Arg212His
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

5-131607131-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607131
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607131
    reference: chr 5
allele count: 5
allele frequency: 4.287576318858476e-5
allele num: 116616
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.642G>T
  hgvsp: ENSP00000368303.3:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5904C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.649G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.258G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.642G>T
  hgvsp: ENSP00000253754.3:p.Leu214Phe
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.385G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5904C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5904C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23740C>A
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9906
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42885
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu214Phe
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

5-131607138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607138
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607138
    reference: chr 5
allele count: 1
allele frequency: 8.584427847883938e-6
allele num: 116490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23733T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.649A>G
  hgvsp: ENSP00000253754.3:p.Met217Val
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.649A>G
  hgvsp: ENSP00000368303.3:p.Met217Val
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5897T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5897T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.265A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5897T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.392A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.656A>G
  variant of: http://identifiers.org/hgnc/16501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Met217Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

5-131607150-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607150
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607150
    reference: chr 5
allele count: 1
allele frequency: 8.64812508648125e-6
allele num: 115632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.404G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.277G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5885C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5885C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.661G>T
  hgvsp: ENSP00000368303.3:p.Gly221Cys
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.668G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.661G>T
  hgvsp: ENSP00000253754.3:p.Gly221Cys
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5885C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23721C>A
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly221Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

5-131607154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607154
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607154
    reference: chr 5
allele count: 1
allele frequency: 8.659808098652533e-6
allele num: 115476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5881T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5881T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.665A>G
  hgvsp: ENSP00000368303.3:p.Glu222Gly
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.672A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5881T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.665A>G
  hgvsp: ENSP00000253754.3:p.Glu222Gly
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.408A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23717T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.281A>G
  variant of: http://identifiers.org/hgnc/16501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu222Gly
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-131607158-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607158
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607158
    reference: chr 5
allele count: 1
allele frequency: 8.68266592574584e-6
allele num: 115172
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.412C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5877G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5877G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.669C>G
  hgvsp: ENST00000253754.3:c.669C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5877G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.669C>G
  hgvsp: ENST00000379018.3:c.669C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.285C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.676C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23713G>C
  variant of: http://identifiers.org/hgnc/8547
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 7.75e1
  variant carriers: 0
hgvs: c.669C>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

5-131607159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607159
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607159
    reference: chr 5
allele count: 1
allele frequency: 8.685984295740394e-6
allele num: 115128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5876C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670G>A
  hgvsp: ENSP00000368303.3:p.Gly224Arg
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5876C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5876C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23712C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.286G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670G>A
  hgvsp: ENSP00000253754.3:p.Gly224Arg
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.677G>A
  variant of: http://identifiers.org/hgnc/16501
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8043
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly224Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

5-131607166-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607166
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607166
    reference: chr 5
allele count: 1
allele frequency: 8.727221950708651e-6
allele num: 114584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+7C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+7C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23705G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5869G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+7C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5869G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5869G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.293C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.684C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
hgvs: c.670+7C>T
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

5-131607167-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607167
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607167
    reference: chr 5
allele count: 1
allele frequency: 8.733166820952613e-6
allele num: 114506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23704C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+8G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+8G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.685G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+8G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5868C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5868C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5868C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.294G>C
  variant of: http://identifiers.org/hgnc/16501
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
hgvs: c.670+8G>C
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-131607171-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607171
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607171
    reference: chr 5
allele count: 1
allele frequency: 8.753348155669544e-6
allele num: 114242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+12G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5864C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+12G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+12G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5864C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.689G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5864C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.298G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23700C>G
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/5-131607172-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607172
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607172
    reference: chr 5
allele count: 27
allele frequency: 2.369127634557675e-4
allele num: 113966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+13C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.690C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+13C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5863G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+13C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5863G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5863G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.299C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23699G>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9555
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4543
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-131607173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607173
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607173
    reference: chr 5
allele count: 1
allele frequency: 8.771775933755548e-6
allele num: 114002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5862G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5862G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+14C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5862G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.300C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.691C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23698G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+14C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+14C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40687
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

5-131607188-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607188
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607188
    reference: chr 5
allele count: 1
allele frequency: 8.986663790934254e-6
allele num: 111276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+29G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23683C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5847C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+29G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.706G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5847C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5847C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.315G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+29G>A
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

5-131607195-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607195
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607195
    reference: chr 5
allele count: 1
allele frequency: 9.334802008849392e-6
allele num: 107126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.713C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+36C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+36C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.322C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23676G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5840G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5840G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5840G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+36C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS

http://identifiers.org/exac.variant/5-131607197-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607197
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607197
    reference: chr 5
allele count: 1
allele frequency: 9.371017317640003e-6
allele num: 106712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5838G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+38C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.324C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23674G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+38C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5838G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5838G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.715C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+38C>A
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1669
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6384
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

5-131607206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607206
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607206
    reference: chr 5
allele count: 1
allele frequency: 9.993404353126935e-6
allele num: 100066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23665C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.724G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.333G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5829C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+47G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+47G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5829C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5829C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+47G>A
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10476
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9054
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18157
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

5-131607210-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607210
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607210
    reference: chr 5
allele count: 3
allele frequency: 3.165692336914083e-5
allele num: 94766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+51C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5825G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.728C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23661G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5825G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5825G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+51C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+51C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.337C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13272
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21641
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

5-131607211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607211
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607211
    reference: chr 5
allele count: 1
allele frequency: 1.057932376962465e-5
allele num: 94524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+52C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5824G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+52C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5824G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23660G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.729C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.338C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5824G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+52C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14865
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21767
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-131607214-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607214
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607214
    reference: chr 5
allele count: 1
allele frequency: 1.090560111673355e-5
allele num: 91696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5821C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+55G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.732G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.341G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5821C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+55G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+55G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5821C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23657C>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13186
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-131607219-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607219
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607219
    reference: chr 5
allele count: 1
allele frequency: 1.241773252204147e-5
allele num: 80530
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+60C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+60C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.346C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5816G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23652G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+60C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.737C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5816G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5816G>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

5-131607221-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607221
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607221
    reference: chr 5
allele count: 1
allele frequency: 1.244183442406749e-5
allele num: 80374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.739C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.348C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23650G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+62C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5814G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5814G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+62C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5814G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+62C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2914
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30701
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-131607227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607227
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607227
    reference: chr 5
allele count: 2
allele frequency: 2.705042198658299e-5
allele num: 73936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.354G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+68G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+68G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5808C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+68G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.745G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5808C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5808C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23644C>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4210
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-131607227-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607227
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607227
    reference: chr 5
allele count: 1
allele frequency: 1.352521099329149e-5
allele num: 73936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.745G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5808C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+68G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5808C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+68G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.354G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5808C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+68G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23644C>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3476
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-131607228-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607228
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607227
    reference: chr 5
allele count: 1
allele frequency: 1.37574290116663e-5
allele num: 72688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5806delG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+73delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.359delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5806delG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.750delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+73delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23642delG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+73delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5806delG
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18983
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4346
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3490
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: AC
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD

5-131607229-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607229
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607229
    reference: chr 5
allele count: 1
allele frequency: 1.410437235543018e-5
allele num: 70900
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.356C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5806G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+70C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23642G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+70C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.747C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5806G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+70C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5806G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4431
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19506
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32790
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3618
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

5-131607235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607235
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607235
    reference: chr 5
allele count: 2
allele frequency: 3.208933671341014e-5
allele num: 62326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5800C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5800C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5800C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.753G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+76G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+76G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.362G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23636C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+76G>A
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19810
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2456
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

5-131607236-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607236
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607237
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 62384
alternate allele: TC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+80dupC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+80dupC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5798dupG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+80dupC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.366dupC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23634dupG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5798dupG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.757dupC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5798dupG
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21602
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

5-131607240-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607240
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607240
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 57478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5795C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+81G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5795C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23631C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.758G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5795C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+81G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.367G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+81G>A
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22644
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7905
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

5-131607245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607245
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607245
    reference: chr 5
allele count: 4
allele frequency: 7.697340568833467e-5
allele num: 51966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+86G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5790C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+86G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23626C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.763G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.372G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+86G>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5790C>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5790C>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17269
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3005
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/5-131607246-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607246
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607246
    reference: chr 5
allele count: 1
allele frequency: 1.909271422025355e-5
allele num: 52376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.373C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+87C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.764C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23625G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+87C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5789G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5789G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+87C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5789G>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

5-131607246-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607246
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607246
    reference: chr 5
allele count: 1
allele frequency: 1.909271422025355e-5
allele num: 52376
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+87C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+87C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23625G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5789G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.373C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.764C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5789G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5789G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+87C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-131607252-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607252
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607252
    reference: chr 5
allele count: 1
allele frequency: 2.027492802400551e-5
allele num: 49322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23619G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5783G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5783G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.770C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+93C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5783G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+93C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.379C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+93C>G
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16208
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30620
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4254
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

5-131607252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607252
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607252
    reference: chr 5
allele count: 2
allele frequency: 4.054985604801103e-5
allele num: 49322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5783G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+93C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+93C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.379C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5783G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.770C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+93C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23619G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5783G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11231
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

5-131607259-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607259
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607258
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 41816
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.387delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23611delG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5775delG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.778delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5775delG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+101delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5775delG
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+101delC
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+101delC
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24273
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1285
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24901
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2524
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: TC
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

5-131607272-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607272
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607272
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 33234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+113C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.790C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5763G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23599G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5763G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5763G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+113C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.399C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+113C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25519
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4585
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16882
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20529
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

5-131607278-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607278
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607278
    reference: chr 5
allele count: 1
allele frequency: 3.212128999100604e-5
allele num: 31132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5757C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5757C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.405G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23593C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+119G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5757C>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.796G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+119G>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+119G>C
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17636
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

5-131607280-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607280
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607280
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 30532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23591A>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5755A>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+121T>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.407T>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+121T>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.798T>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5755A>G
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+121T>C
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5755A>G
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25759
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17826
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

5-131607282-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607282
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607282
    reference: chr 5
allele count: 1460
allele frequency: 4.779989523310634e-2
allele num: 30544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+123C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5753G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5753G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.800C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5753G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23589G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+123C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+123C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.409C>G
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 1.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 3076
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 25773
  bin: 7.5e0
  variant carriers: 1504
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 2.5e0
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8306
  bin: 1.25e1
  variant carriers: 753
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 6.75e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 4507
  bin: 1.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 3.25e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 2.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 3.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 4870
  bin: 1.25e1
  variant carriers: 57
num of homozygotes: 78
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-131607285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607285
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607285
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 29464
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+126C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.803C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+126C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23586G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5750G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.412C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+126C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5750G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5750G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25763
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5003
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

5-131607286-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607286
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607286
    reference: chr 5
allele count: 1
allele frequency: 3.43218012081274e-5
allele num: 29136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5749C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+127G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+127G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23585C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.413G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5749C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+127G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.804G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5749C>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1944
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18271
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS

5-131607287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607287
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607287
    reference: chr 5
allele count: 1
allele frequency: 3.414834039065701e-5
allele num: 29284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23584G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+128C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+128C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.805C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5748G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5748G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5748G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.414C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+128C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17717
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25957
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18292
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/5-131607288-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607288
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607288
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 29204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.415C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23583G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5747G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.806C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+129C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5747G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+129C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+129C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5747G>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17653
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4582
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5402
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-131607290-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607290
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607290
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 28786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5745A>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5745A>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23581A>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.417T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+131T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5745A>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+131T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+131T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.808T>A
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17587
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

5-131607292-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607292
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607292
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 28596
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.419G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5743C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.810G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+133G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+133G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5743C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+133G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23579C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5743C>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17485
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26258
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5417
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/5-131607293-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607293
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607293
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 28688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+134C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+134C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.811C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5742G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.420C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23578G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5742G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+134C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5742G>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17450
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18108
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4900
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3542
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS

5-131607297-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607297
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607297
    reference: chr 5
allele count: 4900
allele frequency: 1.625315112113573e-1
allele num: 30148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5738T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5738T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23574T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+138A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+138A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.424A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5738T>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+138A>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.815A>G
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 26135
  bin: 7.5e0
  variant carriers: 4832
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 15449
  bin: 2.5e0
  variant carriers: 1168
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 2.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.75e1
  variant carriers: 824
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.25e1
  variant carriers: 2459
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 4384
  bin: 1.25e1
  variant carriers: 439
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 9.25e1
  variant carriers: 369
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.75e1
  variant carriers: 439
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 332
num of homozygotes: 503
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

5-131607300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607300
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607300
    reference: chr 5
allele count: 9955
allele frequency: 3.108800199862595e-1
allele num: 32022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5735G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.427C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5735G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.818C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+141C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23571G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+141C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5735G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+141C>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 25767
  bin: 7.5e0
  variant carriers: 9729
genotype depth: GenotypeDepth
  all individuals: 14644
  bin: 2.5e0
  variant carriers: 1923
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 992
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 8649
  bin: 1.25e1
  variant carriers: 4900
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 8.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 2.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 9.75e1
  variant carriers: 1340
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 9.25e1
  variant carriers: 857
genotype quality: GenotypeQuality
  all individuals: 6299
  bin: 2.5e0
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 6.75e1
  variant carriers: 369
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 270
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 159
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 1.25e1
  variant carriers: 862
num of homozygotes: 1722
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

5-131607307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607307
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607307
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 27932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.434C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+148C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23564G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+148C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+148C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.825C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5728G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5728G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5728G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25188
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16327
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

5-131607308-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607308
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607308
    reference: chr 5
allele count: 3
allele frequency: 1.076658053402239e-4
allele num: 27864
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23563C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+149G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5727C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5727C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.826G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.435G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+149G>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5727C>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+149G>T
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25301
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18872
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16988
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

5-131607313-GGCTTCCCGATTCCCTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607313
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607297
    reference: chr 5
allele count: 1
allele frequency: 3.608545034642032e-5
allele num: 27712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4746
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5329
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18027
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17462
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: GGCTTCCCGATTCCCTC
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-131607320-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607320
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607320
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 28678
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5715G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.838C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5715G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.447C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5715G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+161C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23551G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+161C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+161C>G
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26620
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2848
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

5-131607320-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607320
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607320
    reference: chr 5
allele count: 1508
allele frequency: 5.258386219401632e-2
allele num: 28678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.447C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.413+161C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+161C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5715G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.670+161C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5715G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.838C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23551G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5715G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 7261
  bin: 1.25e1
  variant carriers: 764
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16964
  bin: 2.5e0
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 26620
  bin: 7.5e0
  variant carriers: 1503
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 9.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 6.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 8.25e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 1.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 68
num of homozygotes: 85
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

5-131607327-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607327
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607327
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 29510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+168C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-157C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.845C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23544G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5708G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.454C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-157C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5708G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5708G>C
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27759
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15942
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

5-131607329-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607329
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607329
    reference: chr 5
allele count: 2
allele frequency: 6.711409395973154e-5
allele num: 29800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.847C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+170C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-155C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.456C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23542G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5706G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-155C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5706G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5706G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27994
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-131607337-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607337
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607337
    reference: chr 5
allele count: 1
allele frequency: 3.024071610015725e-5
allele num: 33068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+178C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-147C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.464C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.855C>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5698G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23534G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5698G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5698G>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-147C>A
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12336
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-131607337-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607337
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607337
    reference: chr 5
allele count: 40
allele frequency: 1.20962864400629e-3
allele num: 33068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-147C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5698G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.855C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5698G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-147C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.464C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5698G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23534G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+178C>G
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29146
  bin: 7.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24887
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

5-131607337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607337
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607337
    reference: chr 5
allele count: 1
allele frequency: 3.024071610015725e-5
allele num: 33068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.464C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23534G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5698G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.855C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-147C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5698G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-147C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+178C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5698G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12921
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8611
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24887
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

5-131607338-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607338
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607338
    reference: chr 5
allele count: 1
allele frequency: 2.993832704628465e-5
allele num: 33402
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-146C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-146C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.465C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5697G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+179C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5697G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.856C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23533G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5697G>C
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8637
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

5-131607341-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607341
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607341
    reference: chr 5
allele count: 1
allele frequency: 2.924489676551442e-5
allele num: 34194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23530A>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+182T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.468T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5694A>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-143T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.859T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5694A>T
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-143T>A
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5694A>T
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29746
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11695
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8902
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

5-131607345-TGCCCCTCACCCCACGCCCG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607345
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607326
    reference: chr 5
allele count: 1
allele frequency: 2.753455586761385e-5
allele num: 36318
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9587
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
reference allele: TGCCCCTCACCCCACGCCCG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-131607347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607347
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607347
    reference: chr 5
allele count: 61
allele frequency: 1.597611439945524e-3
allele num: 38182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5688G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-137C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.865C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5688G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+188C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-137C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.474C>T
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5688G>A
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23524G>A
  variant of: http://identifiers.org/hgnc/8547
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30747
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29557
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

5-131607348-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 131607348
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 131607348
    reference: chr 5
allele count: 2
allele frequency: 5.123738279448685e-5
allele num: 39034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000391257
  ensembl transcript: ENST00000431054
  gene symbol: P4HA2
  hgvsc: ENST00000431054.1:c.78+23523G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000462597
  gene symbol: PDLIM4
  hgvsc: ENST00000462597.1:n.475C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000368303
  ensembl transcript: ENST00000379018
  gene symbol: PDLIM4
  hgvsc: ENST00000379018.3:c.670+189C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000405406
  ensembl transcript: ENST00000439698
  gene symbol: P4HA2
  hgvsc: ENST00000439698.1:c.-19+5687G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl protein: ENSP00000394953
  ensembl transcript: ENST00000416053
  gene symbol: P4HA2
  hgvsc: ENST00000416053.1:c.-19+5687G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl protein: ENSP00000253754
  ensembl transcript: ENST00000253754
  gene symbol: PDLIM4
  hgvsc: ENST00000253754.3:c.671-136C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000072682
  ensembl transcript: ENST00000471826
  gene symbol: P4HA2
  hgvsc: ENST00000471826.1:n.458+5687G>C
  variant of: http://identifiers.org/hgnc/8547
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000474421
  gene symbol: PDLIM4
  hgvsc: ENST00000474421.1:n.866C>G
  variant of: http://identifiers.org/hgnc/16501
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000131435
  ensembl transcript: ENST00000484620
  gene symbol: PDLIM4
  hgvsc: ENST00000484620.1:n.414-136C>G
  variant of: http://identifiers.org/hgnc/16501
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1749
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.558992267398354e-5
allele num: 64144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.581782e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 2.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.199e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
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GenotypeQuality
all individuals: 287
bin: 3.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
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GenotypeQuality
all individuals: 41871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8281
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216841080554879e-4
allele num: 16436
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.294e1

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 2.655e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.84e-1

DP
type: SiteQuality
SIO_000300: 1.584805e6

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
all individuals: 557
bin: 8.25e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 9.25e1
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GenotypeQuality
all individuals: 1328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556856395566073e-5
allele num: 64232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

FS
type: SiteQuality
SIO_000300: 2.655e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.584805e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeQuality
all individuals: 531
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 1.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 285

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
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variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 13
allele frequency: 1.142957622648145e-3
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.568030447193149e-4
allele num: 8408
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.314063848144953e-4
allele num: 9272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 218
allele frequency: 3.394792575059175e-3
allele num: 64216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.800327332242226e-3
allele num: 6110
num of homozygotes: 0

South Asian
type: Population
allele count: 41
allele frequency: 2.494524215137503e-3
allele num: 16436
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

QD
type: SiteQuality
SIO_000300: 1.272e1

FS
type: SiteQuality
SIO_000300: 1.093e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

DP
type: SiteQuality
SIO_000300: 1.592671e6

GenotypeQuality
all individuals: 1732
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 42321
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variant carriers: 0

GenotypeQuality
all individuals: 100
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variant carriers: 0

GenotypeQuality
all individuals: 412
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GenotypeQuality
all individuals: 165
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variant carriers: 0

GenotypeQuality
all individuals: 398
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GenotypeQuality
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 8284
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variant carriers: 0

GenotypeQuality
all individuals: 73
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variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64242
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.433386056697895e-4
allele num: 16438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-2

DP
type: SiteQuality
SIO_000300: 1.585502e6

FS
type: SiteQuality
SIO_000300: 1.428e0

QD
type: SiteQuality
SIO_000300: 2.829e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8292
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
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GenotypeQuality
all individuals: 99
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GenotypeQuality
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GenotypeQuality
all individuals: 180
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GenotypeQuality
all individuals: 42673
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 146
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variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 2712
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variant carriers: 0

GenotypeQuality
all individuals: 532
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variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.188777936281503e-4
allele num: 8412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.778e-1

FS
type: SiteQuality
SIO_000300: 1.987e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 1.587394e6

MQ
type: SiteQuality
SIO_000300: 5.866e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

GenotypeQuality
all individuals: 42720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
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variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 176
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GenotypeQuality
all individuals: 173
bin: 5.25e1
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GenotypeQuality
all individuals: 526
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 313
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8273
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.275189027606822e-4
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.33038907722452e-5
allele num: 64306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

DP
type: SiteQuality
SIO_000300: 1.588612e6

GenotypeQuality
all individuals: 164
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 2.496433666191155e-3
allele num: 8412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.083465141744738e-5
allele num: 16438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.84e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

QD
type: SiteQuality
SIO_000300: 1.269e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

DP
type: SiteQuality
SIO_000300: 1.588612e6

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 7.25e1
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GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
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GenotypeQuality
all individuals: 8288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
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GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.072041166380789e-4
allele num: 9328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084205402774397e-5
allele num: 16436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.817e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

FS
type: SiteQuality
SIO_000300: 6.169e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.589758e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5948
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9314
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.94106463878327e-4
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64280
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

BaseQRankSum
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ClippingRankSum
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SIO_000300: -7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.588209e6

QD
type: SiteQuality
SIO_000300: 1.207e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-1

FS
type: SiteQuality
SIO_000300: 1.339e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64214
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.189343482397717e-4
allele num: 8408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.584763e6

FS
type: SiteQuality
SIO_000300: 1.283e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.491e0

VQSLOD
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QD
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SIO_000300: 1.196e1

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.883e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

DP
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BaseQRankSum
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SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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MQRankSum
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SIO_000300: -1.93e-1

QD
type: SiteQuality
SIO_000300: 1.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

DP
type: SiteQuality
SIO_000300: 1.568571e6

FS
type: SiteQuality
SIO_000300: 2.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 1
allele frequency: 1.734906315058987e-4
allele num: 5764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63488
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9070
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South Asian
type: Population
allele count: 0
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allele num: 16336
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.56474e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
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SIO_000300: -3.4e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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allele num: 828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.575845441079139e-5
allele num: 63458
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11322
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16336
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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SIO_000300: -9.28e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63206
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.112099644128114e-4
allele num: 8992
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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SIO_000300: 7.24e-1

DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.583080040526849e-5
allele num: 63168
num of homozygotes: 0

East Asian
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European (Finnish)
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South Asian
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Latino
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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MQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585791309863622e-5
allele num: 63060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 1.561e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

DP
type: SiteQuality
SIO_000300: 1.549351e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQ
type: SiteQuality
SIO_000300: 5.896e1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

FS
type: SiteQuality
SIO_000300: 4.081e0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7806
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.814609956131986e-4
allele num: 62916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.668564312399929e-4
allele num: 11242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.269e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.55e0

DP
type: SiteQuality
SIO_000300: 1.54388e6

FS
type: SiteQuality
SIO_000300: 5.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62936
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.187353050365054e-5
allele num: 16162
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.577e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

FS
type: SiteQuality
SIO_000300: 1.595e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 5.63e0

DP
type: SiteQuality
SIO_000300: 1.543324e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.598e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1019
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6916
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
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variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38577
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.625910509885536e-5
allele num: 61504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15864
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.82e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 1.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.22e-1

FS
type: SiteQuality
SIO_000300: 3.899e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.287e0

DP
type: SiteQuality
SIO_000300: 1.496128e6

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 1230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33629
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6447
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.278445410380977e-4
allele num: 7822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.621e0

QD
type: SiteQuality
SIO_000300: 8.34e0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

DP
type: SiteQuality
SIO_000300: 1.415284e6

VQSLOD
type: SiteQuality
SIO_000300: -1.313e-1

FS
type: SiteQuality
SIO_000300: 5.863e0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 33708
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variant carriers: 0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
all individuals: 122
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variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.412650602409639e-5
allele num: 10624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4942
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.425e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.509e0

FS
type: SiteQuality
SIO_000300: 1.488e0

DP
type: SiteQuality
SIO_000300: 1.404789e6

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
all individuals: 779
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17292
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.3238019592269e-4
allele num: 7554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.93e-1

FS
type: SiteQuality
SIO_000300: 4.295e0

QD
type: SiteQuality
SIO_000300: 1.263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.198e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.271436e6

GenotypeQuality
all individuals: 522
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22781
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1208
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1750
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6826
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.102607232968881e-4
allele num: 14268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

DP
type: SiteQuality
SIO_000300: 1.168721e6

VQSLOD
type: SiteQuality
SIO_000300: 6.25e-1

FS
type: SiteQuality
SIO_000300: 1.665e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

QD
type: SiteQuality
SIO_000300: 1.431e1

GenotypeQuality
all individuals: 311
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.912777352716144e-5
allele num: 52280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.68e0

DP
type: SiteQuality
SIO_000300: 1.167441e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.589e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

QD
type: SiteQuality
SIO_000300: 2.643e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

GenotypeQuality
all individuals: 221
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
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GenotypeQuality
all individuals: 24120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3376
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variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
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variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50682
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.133529811834051e-4
allele num: 8822
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.51e0

DP
type: SiteQuality
SIO_000300: 1.116127e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.904e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

VQSLOD
type: SiteQuality
SIO_000300: -1.598e0

FS
type: SiteQuality
SIO_000300: 2.793e0

MQ
type: SiteQuality
SIO_000300: 5.667e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

GenotypeQuality
all individuals: 2993
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10969
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.25713253882268e-5
allele num: 44304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

MQRankSum
type: SiteQuality
SIO_000300: 4.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 9.30753e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.436e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 441
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.680672268907563e-4
allele num: 5950
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.429e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.57e-1

DP
type: SiteQuality
SIO_000300: 9.26245e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.102e0

VQSLOD
type: SiteQuality
SIO_000300: -4.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

QD
type: SiteQuality
SIO_000300: 1.172e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 554
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 231
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variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.940955580809328e-5
allele num: 40478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12686
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.48879e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

FS
type: SiteQuality
SIO_000300: 6.337e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

MQ
type: SiteQuality
SIO_000300: 5.922e1

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.441e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 299
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variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.470477790404664e-5
allele num: 40478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12686
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

FS
type: SiteQuality
SIO_000300: 6.337e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 8.48879e5

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.441e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.876876876876877e-4
allele num: 5328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.04e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 8.36193e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.31e0

QD
type: SiteQuality
SIO_000300: 9.32e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 341
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.940993788819876e-4
allele num: 5152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.907e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 8.013e0

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 8.11765e5

QD
type: SiteQuality
SIO_000300: 9.69e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 913
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.966302800189843e-5
allele num: 33712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.463100880162491e-5
allele num: 11816
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

DP
type: SiteQuality
SIO_000300: 7.49861e5

QD
type: SiteQuality
SIO_000300: 1.275e1

FS
type: SiteQuality
SIO_000300: 4.996e0

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4094
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

QD
type: SiteQuality
SIO_000300: 5.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.47545e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5071
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30958
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

DP
type: SiteQuality
SIO_000300: 7.20711e5

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.898e0

QD
type: SiteQuality
SIO_000300: 3.9e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4388
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1806
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.652300949598247e-4
allele num: 10952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.83629e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.54e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.052e0

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.109127345600292e-5
allele num: 10978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.919e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 1.406e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 6.81291e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

GenotypeQuality
all individuals: 1801
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4503
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1826
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.551640858076431e-5
allele num: 28156
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.919e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.276e0

FS
type: SiteQuality
SIO_000300: 1.406e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 6.81291e5

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.002400960384153e-4
allele num: 1666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 4.755e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.482e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.57386e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
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GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.601094557616297e-5
allele num: 26312
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.079e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.57386e5

FS
type: SiteQuality
SIO_000300: 4.755e0

VQSLOD
type: SiteQuality
SIO_000300: -1.482e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1260
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 21968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.05e0

DP
type: SiteQuality
SIO_000300: 6.14451e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2262
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -8.767e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 1.895e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.747638326585695e-4
allele num: 1482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 5.56029e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.137e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5329
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2000
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15228
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 9.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.96e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.51807e5

GenotypeQuality
all individuals: 2721
bin: 2.5e0
variant carriers: 14

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 56

GenotypeQuality
all individuals: 17039
bin: 2.25e1
variant carriers: 119

GenotypeQuality
all individuals: 357
bin: 7.25e1
variant carriers: 60

GenotypeQuality
all individuals: 232
bin: 9.25e1
variant carriers: 148

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 86

GenotypeQuality
all individuals: 16929
bin: 7.5e0
variant carriers: 75

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 28

GenotypeQuality
all individuals: 388
bin: 7.75e1
variant carriers: 58

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 113

GenotypeQuality
all individuals: 3606
bin: 6.25e1
variant carriers: 119

GenotypeQuality
all individuals: 302
bin: 8.25e1
variant carriers: 83

GenotypeQuality
all individuals: 2493
bin: 9.75e1
variant carriers: 1664

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 106

East Asian
type: Population
allele count: 329
allele frequency: 2.2289972899729e-1
allele num: 1476
num of homozygotes: 32

Latino
type: Population
allele count: 87
allele frequency: 5.444305381727159e-2
allele num: 1598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 24
allele frequency: 3.333333333333333e-2
allele num: 720
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 5.0e-2
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 361
allele frequency: 3.86675235646958e-2
allele num: 9336
num of homozygotes: 16

African
type: Population
allele count: 413
allele frequency: 2.012670565302144e-1
allele num: 2052
num of homozygotes: 29

European (Non-Finnish)
type: Population
allele count: 233
allele frequency: 1.542842007681102e-2
allele num: 15102
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.612e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 5.70725e5

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 17651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1963
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3511
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14558
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.917e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

DP
type: SiteQuality
SIO_000300: 5.61128e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.93e-2

QD
type: SiteQuality
SIO_000300: 2.112e1

GenotypeQuality
all individuals: 4847
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1821
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5452
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17683
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14346
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.915629322268327e-4
allele num: 1446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

QD
type: SiteQuality
SIO_000300: 1.244e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

DP
type: SiteQuality
SIO_000300: 5.60263e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.49e-2

FS
type: SiteQuality
SIO_000300: 5.894e0

GenotypeQuality
all individuals: 4774
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1509
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5435
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17941
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 7.507507507507507e-4
allele num: 1332
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.277e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.764e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 5.59874e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.795e1

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18336
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3543
bin: 6.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 7.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.187e-1

DP
type: SiteQuality
SIO_000300: 5.60124e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18230
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4825
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17746
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5487
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1491
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.114e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.59405e5

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18149
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1635
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4611
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17995
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14062
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.812e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 5.59812e5

GenotypeQuality
all individuals: 305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1956
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5475
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1344
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.638e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-2

DP
type: SiteQuality
SIO_000300: 5.5967e5

QD
type: SiteQuality
SIO_000300: 2.628e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3618
bin: 6.25e1
variant carriers: 188

GenotypeQuality
all individuals: 4557
bin: 2.5e0
variant carriers: 30

GenotypeQuality
all individuals: 1233
bin: 3.25e1
variant carriers: 228

GenotypeQuality
all individuals: 14299
bin: 7.5e0
variant carriers: 466

GenotypeQuality
all individuals: 4450
bin: 1.75e1
variant carriers: 721

GenotypeQuality
all individuals: 819
bin: 6.75e1
variant carriers: 117

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 116

GenotypeQuality
all individuals: 13575
bin: 2.25e1
variant carriers: 617

GenotypeQuality
all individuals: 323
bin: 5.75e1
variant carriers: 314

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 279

GenotypeQuality
all individuals: 523
bin: 7.75e1
variant carriers: 212

GenotypeQuality
all individuals: 1657
bin: 2.75e1
variant carriers: 321

GenotypeQuality
all individuals: 4890
bin: 9.75e1
variant carriers: 4800

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 153

African
type: Population
allele count: 991
allele frequency: 4.516864175022789e-1
allele num: 2194
num of homozygotes: 189

East Asian
type: Population
allele count: 758
allele frequency: 4.743429286608261e-1
allele num: 1598
num of homozygotes: 151

Other
type: Population
allele count: 36
allele frequency: 1.40625e-1
allele num: 256
num of homozygotes: 2

Latino
type: Population
allele count: 189
allele frequency: 1.342329545454546e-1
allele num: 1408
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 1913
allele frequency: 1.301360544217687e-1
allele num: 14700
num of homozygotes: 90

European (Finnish)
type: Population
allele count: 104
allele frequency: 1.460674157303371e-1
allele num: 712
num of homozygotes: 6

South Asian
type: Population
allele count: 909
allele frequency: 9.795258620689655e-2
allele num: 9280
num of homozygotes: 57

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.23e0

DP
type: SiteQuality
SIO_000300: 6.15176e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.611e1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

GenotypeQuality
all individuals: 10083
bin: 2.25e1
variant carriers: 1495

GenotypeQuality
all individuals: 445
bin: 5.75e1
variant carriers: 437

GenotypeQuality
all individuals: 11169
bin: 7.5e0
variant carriers: 810

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 823

GenotypeQuality
all individuals: 1727
bin: 2.75e1
variant carriers: 794

GenotypeQuality
all individuals: 426
bin: 7.75e1
variant carriers: 239

GenotypeQuality
all individuals: 640
bin: 3.75e1
variant carriers: 382

GenotypeQuality
all individuals: 9376
bin: 9.75e1
variant carriers: 8635

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 331

GenotypeQuality
all individuals: 755
bin: 8.75e1
variant carriers: 708

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 245

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 410

GenotypeQuality
all individuals: 4522
bin: 1.75e1
variant carriers: 1631

GenotypeQuality
all individuals: 2884
bin: 6.25e1
variant carriers: 491

European (Non-Finnish)
type: Population
allele count: 7686
allele frequency: 4.561424332344214e-1
allele num: 16850
num of homozygotes: 1516

South Asian
type: Population
allele count: 1220
allele frequency: 1.308170705554364e-1
allele num: 9326
num of homozygotes: 87

European (Finnish)
type: Population
allele count: 322
allele frequency: 3.833333333333334e-1
allele num: 840
num of homozygotes: 49

East Asian
type: Population
allele count: 22
allele frequency: 1.71606864274571e-2
allele num: 1282
num of homozygotes: 0

Latino
type: Population
allele count: 443
allele frequency: 2.949400798934754e-1
allele num: 1502
num of homozygotes: 54

Other
type: Population
allele count: 79
allele frequency: 2.969924812030075e-1
allele num: 266
num of homozygotes: 11

African
type: Population
allele count: 183
allele frequency: 9.355828220858896e-2
allele num: 1956
num of homozygotes: 5

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.725e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 7.27494e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.813e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5671
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9102
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.68e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 2.37e0

VQSLOD
type: SiteQuality
SIO_000300: -3.113e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.48525e5

GenotypeQuality
all individuals: 2038
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5719
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17589
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5110
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 226
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1711
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1176
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.28875246656435e-4
allele num: 9122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.72e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.49764e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

GenotypeQuality
all individuals: 594
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1282
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.094810597766586e-4
allele num: 9134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.52452e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.182e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.725e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

QD
type: SiteQuality
SIO_000300: 3.19e0

FS
type: SiteQuality
SIO_000300: 8.414e0

VQSLOD
type: SiteQuality
SIO_000300: -7.377e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4029
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18789
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 3.341e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.86e-2

QD
type: SiteQuality
SIO_000300: 1.754e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 6.66869e5

GenotypeQuality
all individuals: 578
bin: 3.75e1
variant carriers: 30

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 104

GenotypeQuality
all individuals: 18789
bin: 2.25e1
variant carriers: 139

GenotypeQuality
all individuals: 15599
bin: 7.5e0
variant carriers: 58

GenotypeQuality
all individuals: 3736
bin: 1.75e1
variant carriers: 117

GenotypeQuality
all individuals: 2020
bin: 2.75e1
variant carriers: 79

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 123

GenotypeQuality
all individuals: 2770
bin: 6.25e1
variant carriers: 120

GenotypeQuality
all individuals: 2848
bin: 2.5e0
variant carriers: 6

GenotypeQuality
all individuals: 1674
bin: 3.25e1
variant carriers: 57

GenotypeQuality
all individuals: 231
bin: 9.25e1
variant carriers: 142

GenotypeQuality
all individuals: 4029
bin: 9.75e1
variant carriers: 1700

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 97

GenotypeQuality
all individuals: 249
bin: 7.25e1
variant carriers: 39

African
type: Population
allele count: 404
allele frequency: 2.059123343527013e-1
allele num: 1962
num of homozygotes: 32

European (Finnish)
type: Population
allele count: 32
allele frequency: 5.047318611987382e-2
allele num: 634
num of homozygotes: 0

Other
type: Population
allele count: 12
allele frequency: 5.0e-2
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 372
allele frequency: 4.011214147077852e-2
allele num: 9274
num of homozygotes: 13

East Asian
type: Population
allele count: 397
allele frequency: 2.551413881748072e-1
allele num: 1556
num of homozygotes: 38

Latino
type: Population
allele count: 60
allele frequency: 4.950495049504951e-2
allele num: 1212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 231
allele frequency: 1.673913043478261e-2
allele num: 13800
num of homozygotes: 2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 3.341e0

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.754e1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

DP
type: SiteQuality
SIO_000300: 6.66869e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.86e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 3827
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15061
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 6.74251e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 6.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.724e-1

GenotypeQuality
all individuals: 14667
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 755
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2707
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 5.055611729019212e-4
allele num: 1978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.066552901023891e-4
allele num: 9376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 1.378e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-2

DP
type: SiteQuality
SIO_000300: 6.77998e5

QD
type: SiteQuality
SIO_000300: 1.303e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2747
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 961
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.02291325695581e-4
allele num: 9776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.357e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

FS
type: SiteQuality
SIO_000300: 1.846e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 7.07347e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

GenotypeQuality
all individuals: 12336
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 961
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 9.75e1
variant carriers: 39

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 234
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2460
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 1

African
type: Population
allele count: 36
allele frequency: 1.640838650865998e-2
allele num: 2194
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.04582651391162e-4
allele num: 9776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.234567901234568e-3
allele num: 1620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.99e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

DP
type: SiteQuality
SIO_000300: 7.07347e5

FS
type: SiteQuality
SIO_000300: 1.846e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 607
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12336
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variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3088
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 4.25e1
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GenotypeQuality
all individuals: 2781
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.557885141294439e-4
allele num: 2194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9776
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.99e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

FS
type: SiteQuality
SIO_000300: 1.846e0

DP
type: SiteQuality
SIO_000300: 7.07347e5

VQSLOD
type: SiteQuality
SIO_000300: 3.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e-1

GenotypeQuality
all individuals: 3295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
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variant carriers: 0

GenotypeQuality
all individuals: 12135
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variant carriers: 0

GenotypeQuality
all individuals: 622
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variant carriers: 0

GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 988
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variant carriers: 0

GenotypeQuality
all individuals: 93
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2700
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2200
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.019744762822056e-5
allele num: 16612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.92e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.954e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.87e0

VQSLOD
type: SiteQuality
SIO_000300: -1.048e0

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 7.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

DP
type: SiteQuality
SIO_000300: 7.1054e5

GenotypeQuality
all individuals: 240
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11211
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.853430110044486e-5
allele num: 17084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 1.971e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.21703e5

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.194e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 29578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1757
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 3.75e1
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GenotypeQuality
all individuals: 1768
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variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 85
bin: 8.75e1
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GenotypeQuality
all individuals: 4129
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.438329345225147e-5
allele num: 18388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1966
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.25e0

QD
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 5.096e1

VQSLOD
type: SiteQuality
SIO_000300: -1.074e0

DP
type: SiteQuality
SIO_000300: 7.48931e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.51e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 3078
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8799
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 730
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 256
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 9.75e1
variant carriers: 58

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2324
num of homozygotes: 0

South Asian
type: Population
allele count: 59
allele frequency: 5.70048309178744e-3
allele num: 10350
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.028066207463761e-4
allele num: 19454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

DP
type: SiteQuality
SIO_000300: 7.62951e5

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

QD
type: SiteQuality
SIO_000300: 1.281e1