2-96688366-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688366
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688366
    reference: chr 2
allele count: 27
allele frequency: 2.239585925446673e-4
allele num: 120558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+50T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-56A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-56A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+50T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+50T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+50T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+50T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-56A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+50T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+50T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+50T>C
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3199
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16129
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

2-96688369-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688369
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688369
    reference: chr 2
allele count: 1
allele frequency: 8.294487483618387e-6
allele num: 120562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-53G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-53G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+47C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-53G>A
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16115
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

2-96688379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688379
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688379
    reference: chr 2
allele count: 1
allele frequency: 8.294487483618387e-6
allele num: 120562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-43C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-43C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+37G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-43C>T
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2398
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

2-96688384-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688384
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688384
    reference: chr 2
allele count: 6
allele frequency: 4.97619719010732e-5
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-38G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-38G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+32C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-38G>A
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16114
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-96688385-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688385
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688385
    reference: chr 2
allele count: 1
allele frequency: 8.293386853323161e-6
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-37G>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+31C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+31C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+31C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+31C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+31C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-37G>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+31C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-37G>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+31C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+31C>A
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/2-96688387-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688387
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688387
    reference: chr 2
allele count: 30
allele frequency: 2.488057324840764e-4
allele num: 120576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+29G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+29G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+29G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+29G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+29G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-35C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+29G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-35C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+29G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-35C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+29G>T
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16112
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-96688387-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688387
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688385
    reference: chr 2
allele count: 4
allele frequency: 3.317409766454352e-5
allele num: 120576
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+27_2058+28delCT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-33_390-32delGA
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+27_2796+28delCT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-33_452-32delGA
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-33_327-32delGA
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+27_3503+28delCT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+27_2271+28delCT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+27_2581+28delCT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+27_*2+28delCT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+27_2271+28delCT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+27_4171+28delCT
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16112
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CAG
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

2-96688401-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688401
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688401
    reference: chr 2
allele count: 1
allele frequency: 8.29132395860971e-6
allele num: 120608
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-21A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-21A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+15T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-21A>G
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4437
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16089
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

2-96688402-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688402
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688402
    reference: chr 2
allele count: 49
allele frequency: 4.062816111967896e-4
allele num: 120606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+14C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+14C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-20G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+14C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-20G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+14C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+14C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+14C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-20G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+14C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+14C>G
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16089
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

2-96688410-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688410
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688410
    reference: chr 2
allele count: 39
allele frequency: 3.257655490402446e-4
allele num: 119718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-12T>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+6A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+6A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+6A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+6A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-12T>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+6A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+6A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+6A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-12T>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+6A>G
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16071
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: c.2271+6A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

2-96688410-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688410
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688411
    reference: chr 2
allele count: 1
allele frequency: 8.352962795903706e-6
allele num: 119718
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4171+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2058+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2796+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.327-11dupC
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.452-11dupC
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3503+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2581+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2271+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2271+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.*2+5dupG
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.390-11dupC
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 16071
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4453
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2271+5dupG
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

2-96688423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688423
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688423
    reference: chr 2
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2264A>G
  hgvsp: ENSP00000352547.4:p.Asp755Gly
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.2011A>G
  hgvsp: ENSP00000366341.3:p.Thr671Ala
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2574A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2051A>G
  hgvsp: ENSP00000393770.1:p.Asp684Gly
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.453T>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.328T>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3496A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4164A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2264A>G
  hgvsp: ENSP00000389395.1:p.Asp755Gly
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2789A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.391T>C
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15998
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp755Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/2-96688424-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688424
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688424
    reference: chr 2
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3495G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.454C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.329C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2263G>T
  hgvsp: ENSP00000389395.1:p.Asp755Tyr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.2010G>T
  hgvsp: ENSP00000366341.3:p.Glu670Asp
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.392C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4163G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2263G>T
  hgvsp: ENSP00000352547.4:p.Asp755Tyr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2050G>T
  hgvsp: ENSP00000393770.1:p.Asp684Tyr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2788G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2573G>T
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15998
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp755Tyr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: VQSLOD

2-96688427-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688427
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688427
    reference: chr 2
allele count: 2
allele frequency: 1.657577616071872e-5
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.332T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2260A>C
  hgvsp: ENST00000359548.4:c.2260A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2047A>C
  hgvsp: ENST00000453542.1:c.2047A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.2007A>C
  hgvsp: ENST00000377137.3:c.2007A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2570A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2785A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.457T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4160A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2260A>C
  hgvsp: ENST00000434632.1:c.2260A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3492A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.395T>G
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15997
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg754Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

2-96688428-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688428
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688428
    reference: chr 2
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4159C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.458G>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.2006C>A
  hgvsp: ENSP00000366341.3:p.Ser669Ter
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2046C>A
  hgvsp: ENSP00000393770.1:p.Phe682Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2784C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.333G>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.396G>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2259C>A
  hgvsp: ENSP00000389395.1:p.Phe753Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3491C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2259C>A
  hgvsp: ENSP00000352547.4:p.Phe753Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2569C>A
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15996
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser669Ter
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

2-96688432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688432
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688432
    reference: chr 2
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4155C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2255C>T
  hgvsp: ENSP00000389395.1:p.Thr752Ile
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2042C>T
  hgvsp: ENSP00000393770.1:p.Thr681Ile
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.462G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3487C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.2002C>T
  hgvsp: ENSP00000366341.3:p.Pro668Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2565C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.400G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2780C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2255C>T
  hgvsp: ENSP00000352547.4:p.Thr752Ile
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.337G>A
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr752Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-96688433-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688433
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688433
    reference: chr 2
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.2001A>T
  hgvsp: ENST00000377137.3:c.2001A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4154A>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.401T>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2041A>T
  hgvsp: ENSP00000393770.1:p.Thr681Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2254A>T
  hgvsp: ENSP00000389395.1:p.Thr752Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.338T>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3486A>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2254A>T
  hgvsp: ENSP00000352547.4:p.Thr752Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2779A>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.463T>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2564A>T
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15996
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr752Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-96688436-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688436
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688436
    reference: chr 2
allele count: 2
allele frequency: 1.657247974014352e-5
allele num: 120682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3483T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4151T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2251T>A
  hgvsp: ENSP00000389395.1:p.Trp751Arg
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2251T>A
  hgvsp: ENSP00000352547.4:p.Trp751Arg
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2038T>A
  hgvsp: ENSP00000393770.1:p.Trp680Arg
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2776T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.341A>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2561T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1998T>A
  hgvsp: ENST00000377137.3:c.1998T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.404A>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.466A>T
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15995
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp751Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

2-96688443-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688443
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688443
    reference: chr 2
allele count: 2
allele frequency: 1.656891009709381e-5
allele num: 120708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2554T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.348A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2244T>C
  hgvsp: ENST00000434632.1:c.2244T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3476T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.473A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2769T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.411A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2244T>C
  hgvsp: ENST00000359548.4:c.2244T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1991T>C
  hgvsp: ENSP00000366341.3:p.Val664Ala
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4144T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2031T>C
  hgvsp: ENST00000453542.1:c.2031T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15993
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val664Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/2-96688451-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688451
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688451
    reference: chr 2
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2236G>T
  hgvsp: ENSP00000389395.1:p.Ala746Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2546G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2023G>T
  hgvsp: ENSP00000393770.1:p.Ala675Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1983G>T
  hgvsp: ENST00000377137.3:c.1983G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.481C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3468G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2236G>T
  hgvsp: ENSP00000352547.4:p.Ala746Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4136G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.419C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.356C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2761G>T
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15991
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala746Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

2-96688452-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688452
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688452
    reference: chr 2
allele count: 2
allele frequency: 1.656671415791392e-5
allele num: 120724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.420G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.357G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4135C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2235C>T
  hgvsp: ENST00000434632.1:c.2235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1982C>T
  hgvsp: ENSP00000366341.3:p.Ser661Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2235C>T
  hgvsp: ENST00000359548.4:c.2235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3467C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2022C>T
  hgvsp: ENST00000453542.1:c.2022C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2545C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.482G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2760C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 15990
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser661Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-96688455-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688455
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688455
    reference: chr 2
allele count: 2
allele frequency: 1.656671415791392e-5
allele num: 120724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2542G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1979G>A
  hgvsp: ENSP00000366341.3:p.Ser660Asn
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.360C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2232G>A
  hgvsp: ENST00000434632.1:c.2232G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.485C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3464G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2232G>A
  hgvsp: ENST00000359548.4:c.2232G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.423C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2019G>A
  hgvsp: ENST00000453542.1:c.2019G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4132G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2757G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15989
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser660Asn
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

2-96688462-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688462
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688462
    reference: chr 2
allele count: 25
allele frequency: 2.07083926973924e-4
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.367T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.492T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2225A>C
  hgvsp: ENSP00000389395.1:p.Asp742Ala
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2225A>C
  hgvsp: ENSP00000352547.4:p.Asp742Ala
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2535A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2750A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4125A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3457A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1972A>C
  hgvsp: ENSP00000366341.3:p.Thr658Pro
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2012A>C
  hgvsp: ENSP00000393770.1:p.Asp671Ala
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.430T>G
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15988
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4106
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp742Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

2-96688465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688465
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688465
    reference: chr 2
allele count: 3
allele frequency: 2.484965955966403e-5
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.370G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2009C>T
  hgvsp: ENSP00000393770.1:p.Ala670Val
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4122C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.433G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2222C>T
  hgvsp: ENSP00000389395.1:p.Ala741Val
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2747C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2222C>T
  hgvsp: ENSP00000352547.4:p.Ala741Val
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3454C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.495G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2532C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1969C>T
  hgvsp: ENSP00000366341.3:p.Arg657Trp
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15973
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala741Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-96688468-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688468
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688468
    reference: chr 2
allele count: 4
allele frequency: 3.313287941288538e-5
allele num: 120726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2744G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2219G>T
  hgvsp: ENSP00000352547.4:p.Cys740Phe
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2529G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2006G>T
  hgvsp: ENSP00000393770.1:p.Cys669Phe
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2219G>T
  hgvsp: ENSP00000389395.1:p.Cys740Phe
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3451G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.498C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1966G>T
  hgvsp: ENSP00000366341.3:p.Val656Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.436C>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4119G>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.373C>A
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15971
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys740Phe
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-96688471-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688471
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688471
    reference: chr 2
allele count: 3
allele frequency: 2.484924789609701e-5
allele num: 120728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963A>C
  hgvsp: ENSP00000366341.3:p.Ser655Arg
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216A>C
  hgvsp: ENSP00000352547.4:p.Glu739Ala
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216A>C
  hgvsp: ENSP00000389395.1:p.Glu739Ala
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.439T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.376T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.501T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003A>C
  hgvsp: ENSP00000393770.1:p.Glu668Ala
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu739Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD

2-96688474-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688474
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688474
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.442G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.379G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.504G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-3C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15966
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2216-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

2-96688476-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688476
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688476
    reference: chr 2
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-5T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-5T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-5T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-5T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-5T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-5T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-5T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.381A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.444A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.506A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-5T>C
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15966
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2216-5T>C
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

2-96688476-AAAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688476
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688473
    reference: chr 2
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-8_2003-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-8_2216-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-8_2526-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-8_2216-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-8_2741-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-8_3448-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-8_4116-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.386_388delAGA
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-8_1963-6delCTT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.449_451delAGA
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000483000
  gene symbol: FAHD2CP
  hgvsc: ENST00000483000.2:n.507_509delAAG
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15966
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2216-8_2216-6delCTT
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: AAAG
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

2-96688495-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688495
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688495
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-24C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-24C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-24C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-24C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.400G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-24C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-24C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-24C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.463G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-24C>G
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-96688496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688496
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688496
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-25G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-25G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-25G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.401C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.464C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-25G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-25G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-25G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-25G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-25G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15965
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

2-96688498-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688498
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688498
    reference: chr 2
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-27G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-27G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-27G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-27G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-27G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.403C>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-27G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-27G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.466C>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-27G>C
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15964
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-96688506-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688506
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688506
    reference: chr 2
allele count: 2
allele frequency: 1.656589083077942e-5
allele num: 120730
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-35C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-35C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-35C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.474G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.406+5G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-35C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-35C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-35C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-35C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-35C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4446
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15964
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 7.75e1
  variant carriers: 0
hgvs: n.406+5G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

2-96688510-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688510
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688510
    reference: chr 2
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.406+9A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2216-39T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.478A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4116-39T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2741-39T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2216-39T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2003-39T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3448-39T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2526-39T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1963-39T>C
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15964
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3713
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4638
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

2-96688662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688662
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688662
    reference: chr 2
allele count: 2
allele frequency: 1.685289111347052e-5
allele num: 118674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+44T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+44T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+44T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+44T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.630A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+44T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+44T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.427A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+44T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+44T>C
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-96688669-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688669
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688669
    reference: chr 2
allele count: 1
allele frequency: 8.422187410514259e-6
allele num: 118734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+37A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+37A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+37A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.434T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+37A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+37A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+37A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.637T>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+37A>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+37A>C
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8885
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-96688670-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688670
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688670
    reference: chr 2
allele count: 1
allele frequency: 8.42971305256769e-6
allele num: 118628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+36C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+36C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.638G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+36C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+36C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+36C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+36C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+36C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.435G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+36C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39641
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

2-96688677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688677
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688677
    reference: chr 2
allele count: 1
allele frequency: 8.411702360323682e-6
allele num: 118882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+29C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+29C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+29C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+29C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+29C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.645G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.442G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+29C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+29C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+29C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8829
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

2-96688691-CTGGT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688691
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688687
    reference: chr 2
allele count: 1
allele frequency: 8.383916294979712e-6
allele num: 119276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+11_2002+14delACCA
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.460_463delTTGG
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+11_2215+14delACCA
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.663_666delTTGG
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+11_2525+14delACCA
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+11_3447+14delACCA
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+11_1962+14delACCA
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+11_2215+14delACCA
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+11_4115+14delACCA
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+11_2740+14delACCA
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: CTGGT
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

2-96688695-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688695
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688695
    reference: chr 2
allele count: 2
allele frequency: 1.674817444898506e-5
allele num: 119416
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+11A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+11A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+11A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+11A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.663T>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+11A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.460T>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+11A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+11A>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+11A>G
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-96688698-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688698
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688698
    reference: chr 2
allele count: 1
allele frequency: 8.36372152152822e-6
allele num: 119564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+8C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+8C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+8C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+8C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+8C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.463G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+8C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+8C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.666G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+8C>G
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
hgvs: c.2215+8C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-96688698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688698
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688698
    reference: chr 2
allele count: 13
allele frequency: 1.087283797798668e-4
allele num: 119564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.463G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+8C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.666G>A
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29520
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
hgvs: c.2215+8C>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

2-96688701-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688701
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688701
    reference: chr 2
allele count: 1
allele frequency: 8.359806052499582e-6
allele num: 119620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.669C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+5G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+5G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+5G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+5G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.466C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+5G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+5G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+5G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+5G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2215+5G>A
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

2-96688705-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688705
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688705
    reference: chr 2
allele count: 3
allele frequency: 2.50685206230363e-5
allele num: 119672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.673C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447+1G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.470C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115+1G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215+1G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525+1G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215+1G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002+1G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740+1G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962+1G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
hgvs: c.2215+1G>A
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-96688706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688706
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688706
    reference: chr 2
allele count: 3
allele frequency: 2.506349418526935e-5
allele num: 119696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3447G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2215G>A
  hgvsp: ENSP00000352547.4:p.Glu739Lys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2215G>A
  hgvsp: ENSP00000389395.1:p.Glu739Lys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2525G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1962G>A
  hgvsp: ENST00000377137.3:c.1962G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2740G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2002G>A
  hgvsp: ENSP00000393770.1:p.Glu668Lys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.471C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.674C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4115G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu739Lys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

2-96688707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688707
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688707
    reference: chr 2
allele count: 4
allele frequency: 3.341296757271497e-5
allele num: 119714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.2001C>T
  hgvsp: ENST00000453542.1:c.2001C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1961C>T
  hgvsp: ENSP00000366341.3:p.Ser654Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3446C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2524C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.472G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.675G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2739C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2214C>T
  hgvsp: ENST00000434632.1:c.2214C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4114C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2214C>T
  hgvsp: ENST00000359548.4:c.2214C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ser654Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

2-96688720-TCCTGGGCGGTGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688720
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688708
    reference: chr 2
allele count: 1
allele frequency: 8.338197281747686e-6
allele num: 119930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsp: ENSP00000352547.4:p.Ala730_Gln733del
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsp: ENSP00000366341.3:p.Pro646_Arg649del
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsp: ENSP00000389395.1:p.Ala730_Gln733del
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsp: ENSP00000393770.1:p.Ala659_Gln662del
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17988
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala730_Gln733del
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: TCCTGGGCGGTGG
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-96688728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688728
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688728
    reference: chr 2
allele count: 31
allele frequency: 2.580408869947393e-4
allele num: 120136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4093C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1940C>T
  hgvsp: ENSP00000366341.3:p.Pro647Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2193C>T
  hgvsp: ENST00000359548.4:c.2193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.696G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2193C>T
  hgvsp: ENST00000434632.1:c.2193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1980C>T
  hgvsp: ENST00000453542.1:c.1980C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.493G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2718C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3425C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2503C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8953
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8980
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro647Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

2-96688729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688729
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688729
    reference: chr 2
allele count: 2
allele frequency: 1.664447403462051e-5
allele num: 120160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1939C>T
  hgvsp: ENSP00000366341.3:p.Pro647Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2192C>T
  hgvsp: ENSP00000389395.1:p.Thr731Ile
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3424C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.494G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2502C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.697G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1979C>T
  hgvsp: ENSP00000393770.1:p.Thr660Ile
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4092C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2192C>T
  hgvsp: ENSP00000352547.4:p.Thr731Ile
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2717C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr731Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

2-96688733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688733
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688733
    reference: chr 2
allele count: 11
allele frequency: 9.149435230316238e-5
allele num: 120226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3420G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2188G>A
  hgvsp: ENSP00000389395.1:p.Ala730Thr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2188G>A
  hgvsp: ENSP00000352547.4:p.Ala730Thr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2498G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4088G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.498C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.701C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1975G>A
  hgvsp: ENSP00000393770.1:p.Ala659Thr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2713G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1935G>A
  hgvsp: ENST00000377137.3:c.1935G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala730Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-96688740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688740
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688740
    reference: chr 2
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2181C>T
  hgvsp: ENST00000434632.1:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2706C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3413C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1968C>T
  hgvsp: ENST00000453542.1:c.1968C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1928C>T
  hgvsp: ENSP00000366341.3:p.Ser643Phe
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4081C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.505G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.708G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2181C>T
  hgvsp: ENST00000359548.4:c.2181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2491C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser643Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

2-96688740-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688740
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688740
    reference: chr 2
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4081C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.505G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.708G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1968C>G
  hgvsp: ENSP00000393770.1:p.Phe656Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2491C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3413C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2181C>G
  hgvsp: ENSP00000352547.4:p.Phe727Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1928C>G
  hgvsp: ENSP00000366341.3:p.Ser643Cys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2181C>G
  hgvsp: ENSP00000389395.1:p.Phe727Leu
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2706C>G
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44749
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe727Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

2-96688746-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688746
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688746
    reference: chr 2
allele count: 3
allele frequency: 2.490205192907896e-5
allele num: 120472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4075C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1922C>T
  hgvsp: ENSP00000366341.3:p.Ser641Phe
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2175C>T
  hgvsp: ENST00000359548.4:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3407C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2485C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2175C>T
  hgvsp: ENST00000434632.1:c.2175C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.511G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2700C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1962C>T
  hgvsp: ENST00000453542.1:c.1962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.714G>A
  variant of: http://identifiers.org/hgnc/44135
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser641Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD

2-96688751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688751
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688751
    reference: chr 2
allele count: 1
allele frequency: 8.29737802854298e-6
allele num: 120520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1917C>T
  hgvsp: ENST00000377137.3:c.1917C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2480C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2170C>T
  hgvsp: ENST00000434632.1:c.2170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2170C>T
  hgvsp: ENST00000359548.4:c.2170C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.516G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1957C>T
  hgvsp: ENST00000453542.1:c.1957C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3402C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4070C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2695C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.719G>A
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu724Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-96688755-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688755
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688755
    reference: chr 2
allele count: 1
allele frequency: 8.295863682367972e-6
allele num: 120542
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2166G>C
  hgvsp: ENSP00000389395.1:p.Glu722Asp
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3398G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1913G>C
  hgvsp: ENSP00000366341.3:p.Ser638Thr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4066G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2691G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1953G>C
  hgvsp: ENSP00000393770.1:p.Glu651Asp
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2166G>C
  hgvsp: ENSP00000352547.4:p.Glu722Asp
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.723C>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.520C>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2476G>C
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu722Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

2-96688759-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688759
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688759
    reference: chr 2
allele count: 1
allele frequency: 8.294349888855711e-6
allele num: 120564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3394C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1949C>A
  hgvsp: ENSP00000393770.1:p.Thr650Lys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2162C>A
  hgvsp: ENSP00000352547.4:p.Thr721Lys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1909C>A
  hgvsp: ENSP00000366341.3:p.Gln637Lys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2687C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4062C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2162C>A
  hgvsp: ENSP00000389395.1:p.Thr721Lys
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.727G>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2472C>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.524G>T
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18268
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr721Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

2-96688763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688763
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688763
    reference: chr 2
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2158T>C
  hgvsp: ENSP00000352547.4:p.Tyr720His
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2158T>C
  hgvsp: ENSP00000389395.1:p.Tyr720His
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.731A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3390T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1905T>C
  hgvsp: ENST00000377137.3:c.1905T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2683T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1945T>C
  hgvsp: ENSP00000393770.1:p.Tyr649His
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4058T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.528A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2468T>C
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr720His
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

2-96688763-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688763
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688763
    reference: chr 2
allele count: 1
allele frequency: 8.29393713195654e-6
allele num: 120570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3390T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2158T>A
  hgvsp: ENSP00000352547.4:p.Tyr720Asn
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4058T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2468T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2683T>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1945T>A
  hgvsp: ENSP00000393770.1:p.Tyr649Asn
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.528A>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.731A>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2158T>A
  hgvsp: ENSP00000389395.1:p.Tyr720Asn
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1905T>A
  hgvsp: ENST00000377137.3:c.1905T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30215
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr720Asn
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

2-96688768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688768
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688768
    reference: chr 2
allele count: 3
allele frequency: 2.488387524883875e-5
allele num: 120560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.533A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4053T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2678T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2153T>C
  hgvsp: ENSP00000389395.1:p.Leu718Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2153T>C
  hgvsp: ENSP00000352547.4:p.Leu718Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.736A>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1900T>C
  hgvsp: ENSP00000366341.3:p.Trp634Arg
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2463T>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1940T>C
  hgvsp: ENSP00000393770.1:p.Leu647Ser
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3385T>C
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu718Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

2-96688770-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688770
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688770
    reference: chr 2
allele count: 1
allele frequency: 8.294487483618387e-6
allele num: 120562
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2676G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3383G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1898G>C
  hgvsp: ENSP00000366341.3:p.Ser633Thr
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2461G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1938G>C
  hgvsp: ENSP00000393770.1:p.Glu646Asp
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4051G>C
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2151G>C
  hgvsp: ENSP00000352547.4:p.Glu717Asp
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2151G>C
  hgvsp: ENSP00000389395.1:p.Glu717Asp
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.738C>G
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.535C>G
  variant of: http://identifiers.org/hgnc/44135
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu717Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

2-96688774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688774
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688774
    reference: chr 2
allele count: 4
allele frequency: 3.318565715897589e-5
allele num: 120534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2675-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1937-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2150-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.539G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.742G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2150-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3382-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-3C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2457C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4050-3C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2150-3C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-96688790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688790
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688790
    reference: chr 2
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4050-19G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2675-19G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2150-19G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.555C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.758C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2441G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-19G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3382-19G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1937-19G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2150-19G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-96688802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688802
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688802
    reference: chr 2
allele count: 1
allele frequency: 8.359107247345984e-6
allele num: 119630
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.567C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3382-31G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4050-31G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2429G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1937-31G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2150-31G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.770C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2675-31G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2150-31G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-31G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

2-96688806-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688806
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688806
    reference: chr 2
allele count: 1
allele frequency: 8.388135820695209e-6
allele num: 119216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2425C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1937-35C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2675-35C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.774G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2150-35C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.571G>C
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-35C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2150-35C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4050-35C>G
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3382-35C>G
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

2-96688807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688807
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688807
    reference: chr 2
allele count: 14
allele frequency: 1.176707907477138e-4
allele num: 118976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3382-36G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2150-36G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2424G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2150-36G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.572C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1937-36G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-36G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.775C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2675-36G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4050-36G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29284
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1815
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

2-96688811-GAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688811
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688809
    reference: chr 2
allele count: 11
allele frequency: 9.284894321021001e-5
allele num: 118472
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2418_2419delGT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-42_1897-41delGT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.783_784delCA
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2150-41_2149+41delGT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.580_581delCA
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2150-41_2149+41delGT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3382-41_3381+41delGT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4050-41_4049+41delGT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1937-41_1936+41delGT
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2675-41_2674+41delGT
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16228
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29050
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8673
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: GAC
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

2-96688825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688825
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688825
    reference: chr 2
allele count: 1
allele frequency: 8.708980700898767e-6
allele num: 114824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1936+29G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2406G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2674+29G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4049+29G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-54G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.590C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.793C>T
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2149+29G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2149+29G>A
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3381+29G>A
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7729
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

2-96688826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688826
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688826
    reference: chr 2
allele count: 3
allele frequency: 2.621506842132858e-5
allele num: 114438
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000389395
  ensembl transcript: ENST00000434632
  gene symbol: GPAT2
  hgvsc: ENST00000434632.1:c.2149+28C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2149+28C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000484440
  gene symbol: GPAT2
  hgvsc: ENST00000484440.1:n.2405C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000482704
  gene symbol: GPAT2
  hgvsc: ENST00000482704.1:n.4049+28C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000486463
  gene symbol: GPAT2
  hgvsc: ENST00000486463.1:n.2674+28C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000393770
  ensembl transcript: ENST00000453542
  gene symbol: GPAT2
  hgvsc: ENST00000453542.1:c.1936+28C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000467292
  gene symbol: FAHD2CP
  hgvsc: ENST00000467292.2:n.794G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl transcript: ENST00000471757
  gene symbol: GPAT2
  hgvsc: ENST00000471757.1:n.3381+28C>T
  variant of: http://identifiers.org/hgnc/27168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000231584
  ensembl transcript: ENST00000443258
  gene symbol: FAHD2CP
  hgvsc: ENST00000443258.3:n.591G>A
  variant of: http://identifiers.org/hgnc/44135
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000366341
  ensembl transcript: ENST00000377137
  gene symbol: GPAT2
  hgvsc: ENST00000377137.3:c.1897-55C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

2-96688833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 96688833
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 96688833
    reference: chr 2
allele count: 1
allele frequency: 8.961697704013048e-6
allele num: 111586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000186281
  ensembl protein: ENSP00000352547
  ensembl transcript: ENST00000359548
  gene symbol: GPAT2
  hgvsc: ENST00000359548.4:c.2149+21C>T
  variant of: http://identifiers.org/hgnc/27168
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 518
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54524
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00507858280494e-5
allele num: 66554
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.249488752556237e-3
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727712508638562e-4
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

QD
type: SiteQuality
SIO_000300: 1.594e1

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

FS
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 4.779473e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.539e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

GenotypeQuality
all individuals: 101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54522
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022494887525562e-4
allele num: 9780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.903e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.022e0

MQRankSum
type: SiteQuality
SIO_000300: 4.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.876e0

QD
type: SiteQuality
SIO_000300: 1.285e1

MQ
type: SiteQuality
SIO_000300: 5.718e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.856e0

DP
type: SiteQuality
SIO_000300: 4.776956e6

GenotypeQuality
all individuals: 824
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54525
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502448991856726e-5
allele num: 66558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.6364e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.916e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.26e-1

MQ
type: SiteQuality
SIO_000300: 5.792e1

DP
type: SiteQuality
SIO_000300: 4.777507e6

QD
type: SiteQuality
SIO_000300: 1.133e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.16e0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54529
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022704029453876e-4
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

MQ
type: SiteQuality
SIO_000300: 5.879e1

FS
type: SiteQuality
SIO_000300: 1.387e0

DP
type: SiteQuality
SIO_000300: 4.778155e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.982e0

QD
type: SiteQuality
SIO_000300: 1.144e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.18e-1

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54528
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 742
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.176e1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

DP
type: SiteQuality
SIO_000300: 4.777907e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.957e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

GenotypeQuality
all individuals: 823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54530
bin: 9.75e1
variant carriers: 30

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.633720930232558e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 2.66635752376536e-3
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

DP
type: SiteQuality
SIO_000300: 4.779638e6

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.85e1

FS
type: SiteQuality
SIO_000300: 5.82e0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54530
bin: 9.75e1
variant carriers: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.779638e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

FS
type: SiteQuality
SIO_000300: 5.82e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 6.101e0

MQ
type: SiteQuality
SIO_000300: 5.865e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

VQSLOD
type: SiteQuality
SIO_000300: -2.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.112e1

DP
type: SiteQuality
SIO_000300: 4.776735e6

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 730
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54527
bin: 9.75e1
variant carriers: 49

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.477857639693948e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.11672210462655e-3
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.504639778972342e-4
allele num: 66598
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.994999999999999e0

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

FS
type: SiteQuality
SIO_000300: 5.336e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -8.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.22e1

DP
type: SiteQuality
SIO_000300: 4.780881e6

GenotypeDepth
all individuals: 2447
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 36
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 54363
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1135
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 109
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 866
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 723
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 366
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 502
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 766
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.541463562324018e-4
allele num: 66058
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.461732548359966e-4
allele num: 9512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

FS
type: SiteQuality
SIO_000300: 8.5396e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.677e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.927e0

DP
type: SiteQuality
SIO_000300: 4.776557e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.114e0

MQ
type: SiteQuality
SIO_000300: 5.459e1

QD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeDepth
all individuals: 879
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 60
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.7e0

FS
type: SiteQuality
SIO_000300: 8.5396e1

DP
type: SiteQuality
SIO_000300: 4.776557e6

MQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

QD
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.459e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.114e0

VQSLOD
type: SiteQuality
SIO_000300: -9.927e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.677e0

GenotypeQuality
all individuals: 75
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54581
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.162e0

VQSLOD
type: SiteQuality
SIO_000300: -4.882e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.765641e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.39e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 22
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

BaseQRankSum
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SIO_000300: -7.033e0

QD
type: SiteQuality
SIO_000300: 1.108e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.601e0

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.786e1

DP
type: SiteQuality
SIO_000300: 4.765863e6

VQSLOD
type: SiteQuality
SIO_000300: -2.074e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 826
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54580
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001020346917952e-5
allele num: 66644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.852e1

FS
type: SiteQuality
SIO_000300: 5.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

DP
type: SiteQuality
SIO_000300: 4.765939e6

VQSLOD
type: SiteQuality
SIO_000300: -4.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e-2

QD
type: SiteQuality
SIO_000300: 9.75e0

GenotypeQuality
all individuals: 60
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.427e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.36e-1

FS
type: SiteQuality
SIO_000300: 4.068e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.437e0

MQ
type: SiteQuality
SIO_000300: 5.853e1

DP
type: SiteQuality
SIO_000300: 4.7658e6

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.297e1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

FS
type: SiteQuality
SIO_000300: 6.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.765768e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.358e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.36e-1

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54581
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.206e1

DP
type: SiteQuality
SIO_000300: 4.765847e6

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 5.787e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 1.453e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.925e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -2.818e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.437e0

GenotypeQuality
all individuals: 520
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999940001199976e-5
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.831e0

DP
type: SiteQuality
SIO_000300: 4.765925e6

VQSLOD
type: SiteQuality
SIO_000300: -2.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 5.837e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

QD
type: SiteQuality
SIO_000300: 1.257e1

GenotypeQuality
all individuals: 826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.042483660130719e-4
allele num: 9792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.715e0

MQRankSum
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SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.6e0

FS
type: SiteQuality
SIO_000300: 5.666e0

DP
type: SiteQuality
SIO_000300: 4.765923e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.859e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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MQ
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
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SIO_000300: 1.153e1

ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
SIO_000300: 5.398e1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.263e0

VQSLOD
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SIO_000300: -9.44e0

BaseQRankSum
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SIO_000300: -2.583e0

ClippingRankSum
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SIO_000300: 1.89e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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SIO_000300: 1.344e1

MQ
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SIO_000300: 5.836e1

ClippingRankSum
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SIO_000300: 4.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 25

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.591568762957844e-4
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 22
allele frequency: 2.245814618211515e-3
allele num: 9796
num of homozygotes: 0

South Asian
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allele count: 0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -5.957e-1

MQ
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SIO_000300: 5.831e1

DP
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FS
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SIO_000300: 0.0e0

BaseQRankSum
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MQRankSum
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SIO_000300: 8.55e-1

QD
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ReadPosRankSum
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SIO_000300: 3.64e-1

InbreedingCoeff
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SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.49748141041017e-5
allele num: 66704
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.25e-1

MQRankSum
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SIO_000300: 6.68e-1

VQSLOD
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BaseQRankSum
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SIO_000300: -2.747e0

ClippingRankSum
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InbreedingCoeff
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SIO_000300: 2.0e-3

ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 4.762924e6

QD
type: SiteQuality
SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 5.815e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele num: 900
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South Asian
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allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.196e1

DP
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: 2.1e-3

ReadPosRankSum
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GenotypeDepth
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variant carriers: 3

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49734656552634e-5
allele num: 66706
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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num of homozygotes: 0

East Asian
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 900
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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African
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Latino
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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DP
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FS
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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SIO_000300: 5.845e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54575
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 450
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 7.177e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

InbreedingCoeff
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SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

DP
type: SiteQuality
SIO_000300: 4.761755e6

QD
type: SiteQuality
SIO_000300: 1.569e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.256e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.46e-1

MQ
type: SiteQuality
SIO_000300: 5.847e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 4.761134e6

MQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.314e0

MQRankSum
type: SiteQuality
SIO_000300: -1.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-1

FS
type: SiteQuality
SIO_000300: 1.651e0

DP
type: SiteQuality
SIO_000300: 4.761149e6

MQ
type: SiteQuality
SIO_000300: 5.867e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

QD
type: SiteQuality
SIO_000300: 1.363e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02082482645978e-4
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 4.761052e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 7.539e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.623e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.595e0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.99805126667666e-5
allele num: 66710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.82e-1

DP
type: SiteQuality
SIO_000300: 4.760408e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

FS
type: SiteQuality
SIO_000300: 1.132e0

MQ
type: SiteQuality
SIO_000300: 5.892e1

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.449e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.799e0

DP
type: SiteQuality
SIO_000300: 4.759915e6

QD
type: SiteQuality
SIO_000300: 1.499e1

MQ
type: SiteQuality
SIO_000300: 5.373e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 6.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.991e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.52e0

VQSLOD
type: SiteQuality
SIO_000300: -5.909e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

FS
type: SiteQuality
SIO_000300: 2.562e0

QD
type: SiteQuality
SIO_000300: 1.317e1

VQSLOD
type: SiteQuality
SIO_000300: -1.269e0

MQ
type: SiteQuality
SIO_000300: 5.381e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.604898e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 264
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GenotypeQuality
all individuals: 377
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.530502923260583e-5
allele num: 65338
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.344e1

DP
type: SiteQuality
SIO_000300: 1.613294e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.606e0

BaseQRankSum
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FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 261
bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.614875e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.403e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.373e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.234e0

MQRankSum
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SIO_000300: 8.64e-1

FS
type: SiteQuality
SIO_000300: 6.873e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

VQSLOD
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.071352046282408e-4
allele num: 9334
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.34e0

FS
type: SiteQuality
SIO_000300: 7.076e0

ReadPosRankSum
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SIO_000300: 1.34e0

DP
type: SiteQuality
SIO_000300: 1.625489e6

BaseQRankSum
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SIO_000300: -8.79e-1

MQ
type: SiteQuality
SIO_000300: 4.468e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

QD
type: SiteQuality
SIO_000300: 8.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.716e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65714
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.92e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -1.858e0

FS
type: SiteQuality
SIO_000300: 4.392e0

DP
type: SiteQuality
SIO_000300: 1.638643e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 4.889e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733102253032929e-4
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.641793e6

MQ
type: SiteQuality
SIO_000300: 5.166e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.442e1

FS
type: SiteQuality
SIO_000300: 9.961e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.983e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517036317849449e-5
allele num: 65918
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7713e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.137e0

QD
type: SiteQuality
SIO_000300: 3.39e0

MQRankSum
type: SiteQuality
SIO_000300: -2.324e0

DP
type: SiteQuality
SIO_000300: 1.644813e6

MQ
type: SiteQuality
SIO_000300: 4.688e1

VQSLOD
type: SiteQuality
SIO_000300: -3.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65918
num of homozygotes: 0

East Asian
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allele count: 3
allele frequency: 3.481894150417827e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 9
allele frequency: 9.485666104553119e-4
allele num: 9488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.644813e6

FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.688e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9512
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516438189979376e-5
allele num: 65944
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.889e1

DP
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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BaseQRankSum
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SIO_000300: -4.319e0

InbreedingCoeff
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SIO_000300: 2.2e-3

QD
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SIO_000300: 1.087e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.547108039287013e-5
allele num: 65976
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.372e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.28e-1

ReadPosRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
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DP
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 151
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515335192144502e-5
allele num: 65992
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 4.886e0

DP
type: SiteQuality
SIO_000300: 1.647276e6

QD
type: SiteQuality
SIO_000300: 1.218e1

VQSLOD
type: SiteQuality
SIO_000300: -1.797e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

MQ
type: SiteQuality
SIO_000300: 4.833e1

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.097315436241611e-4
allele num: 9536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029752166272799e-5
allele num: 66012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.7e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQRankSum
type: SiteQuality
SIO_000300: -3.046e0

FS
type: SiteQuality
SIO_000300: 4.426e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

QD
type: SiteQuality
SIO_000300: 9.289999999999999e0

DP
type: SiteQuality
SIO_000300: 1.647826e6

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 554
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GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.650818e6

MQ
type: SiteQuality
SIO_000300: 4.9e1

QD
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.33e-1

FS
type: SiteQuality
SIO_000300: 4.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-1

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 9.75e1
variant carriers: 31

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422774076317383e-4
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

East Asian
type: Population
allele count: 27
allele frequency: 3.133704735376045e-3
allele num: 8616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.018e1

FS
type: SiteQuality
SIO_000300: 1.157e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.152e0

DP
type: SiteQuality
SIO_000300: 1.655722e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

MQ
type: SiteQuality
SIO_000300: 5.184e1

GenotypeQuality
all individuals: 85
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2098
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 404
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 1652
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GenotypeQuality
all individuals: 41
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 32
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GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 580
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GenotypeQuality
all individuals: 8981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.654587e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.973e0

QD
type: SiteQuality
SIO_000300: 1.233e1

VQSLOD
type: SiteQuality
SIO_000300: -1.832e0

FS
type: SiteQuality
SIO_000300: 9.779999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.209e1

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 8984
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 577
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GenotypeQuality
all individuals: 219
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 69
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GenotypeQuality
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GenotypeQuality
all individuals: 1300
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GenotypeQuality
all individuals: 72
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.35623869801085e-4
allele num: 66360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.15e1

QD
type: SiteQuality
SIO_000300: 1.034e1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.947e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.737e0

DP
type: SiteQuality
SIO_000300: 1.656053e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeQuality
all individuals: 285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 43
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1289
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.346e1

FS
type: SiteQuality
SIO_000300: 2.037e0

VQSLOD
type: SiteQuality
SIO_000300: -2.14e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.64e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.657526e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 1651
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.031140441328109e-4
allele num: 9698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.14e0

ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.657526e6

MQ
type: SiteQuality
SIO_000300: 5.346e1

QD
type: SiteQuality
SIO_000300: 8.539999999999999e0

FS
type: SiteQuality
SIO_000300: 2.037e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66540
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 3.082614056720099e-4
allele num: 9732
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East Asian
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
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FS
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ClippingRankSum
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VQSLOD
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MQ
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SIO_000300: 5.197e1

MQRankSum
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InbreedingCoeff
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SIO_000300: 1.0e-3

BaseQRankSum
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SIO_000300: -3.109e0

DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8622
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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DP
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FS
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QD
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ClippingRankSum
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SIO_000300: -9.45e-1

VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 9750
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Latino
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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Other
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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DP
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.792e0

MQRankSum
type: SiteQuality
SIO_000300: -1.852e0

DP
type: SiteQuality
SIO_000300: 1.660777e6

VQSLOD
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BaseQRankSum
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SIO_000300: -2.727e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.379e1

InbreedingCoeff
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SIO_000300: 2.2e-3

QD
type: SiteQuality
SIO_000300: 1.052e1

ReadPosRankSum
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SIO_000300: 3.21e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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QD
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ClippingRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.501276084671971e-5
allele num: 66610
num of homozygotes: 0

South Asian
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InbreedingCoeff
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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FS
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66594
num of homozygotes: 0

East Asian
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African
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South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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South Asian
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African
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East Asian
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European (Non-Finnish)
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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VQSLOD
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

DP
type: SiteQuality
SIO_000300: 1.660638e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.11358574610245e-3
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817080557238038e-4
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

QD
type: SiteQuality
SIO_000300: 9.98e0

FS
type: SiteQuality
SIO_000300: 3.034e0

VQSLOD
type: SiteQuality
SIO_000300: -1.224e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

MQ
type: SiteQuality
SIO_000300: 5.281e1

DP
type: SiteQuality
SIO_000300: 1.660085e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 141
bin: 2.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.014e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

MQ
type: SiteQuality
SIO_000300: 5.028e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.516e0

QD
type: SiteQuality
SIO_000300: 1.116e1

DP
type: SiteQuality
SIO_000300: 1.651175e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.21e-1

QD
type: SiteQuality
SIO_000300: 1.599e1

MQRankSum
type: SiteQuality
SIO_000300: 7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.921e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.23e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.974e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.718e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.637177e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.050420168067227e-4
allele num: 9520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65748
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.24e0

MQ
type: SiteQuality
SIO_000300: 4.703e1

VQSLOD
type: SiteQuality
SIO_000300: -3.389e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 1.2922e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-1

QD
type: SiteQuality
SIO_000300: 1.481e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.672e0

DP
type: SiteQuality
SIO_000300: 1.629662e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1284
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variant carriers: 14

GenotypeQuality
all individuals: 41818
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.981465674917693e-4
allele num: 65608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.778e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 4.839e1

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

QD
type: SiteQuality
SIO_000300: 1.126e1

DP
type: SiteQuality
SIO_000300: 1.625473e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.188361408882082e-5
allele num: 65300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.535626535626536e-4
allele num: 6512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.500175008750437e-4
allele num: 11428
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
SIO_000300: 4.585e1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

QD
type: SiteQuality
SIO_000300: 1.7e1

DP
type: SiteQuality
SIO_000300: 1.613938e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63270
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.228977201943441e-5
allele num: 16054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11108
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 1.1388e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.228e1

QD
type: SiteQuality
SIO_000300: 1.141e1

VQSLOD
type: SiteQuality
SIO_000300: -2.985e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

DP
type: SiteQuality
SIO_000300: 1.530405e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.241418050181001e-5
allele num: 16022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58574101677714e-5
allele num: 63062
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
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Latino
type: Population
allele count: 1
allele frequency: 9.038322487346348e-5
allele num: 11064
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.677e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.518759e6

MQRankSum
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