http://identifiers.org/exac.variant/3-49723357-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723357
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723357
    reference: chr 3
allele count: 12
allele frequency: 1.041992289257059e-4
allele num: 115164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.347G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2985G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.558G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.633G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*286G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.727G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1186G>T
  hgvsp: ENSP00000414287.2:p.Val396Phe
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.935G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.943G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1268G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.165G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.835G>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val396Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ

3-49723359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723359
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723359
    reference: chr 3
allele count: 8
allele frequency: 6.961364427427775e-5
allele num: 114920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.833C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.725C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.556C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1184C>T
  hgvsp: ENSP00000414287.2:p.Thr395Met
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.933C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1266C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.941C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.345C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.163C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*284C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2983C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.631C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15794
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr395Met
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

3-49723361-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723361
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723360
    reference: chr 3
allele count: 3
allele frequency: 2.614105714435092e-5
allele num: 114762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.628delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.830delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*281delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2980delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.930delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1181delG
  hgvsp: ENSP00000414287.2:p.Gly394AlafsTer132
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.160delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.938delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.722delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.553delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.342delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1263delG
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 15682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly394AlafsTer132
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GC
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD

3-49723364-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723364
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723364
    reference: chr 3
allele count: 8
allele frequency: 6.991906867800521e-5
allele num: 114418
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.551C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1179C>A
  hgvsp: ENST00000449682.2:c.1179C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.936C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.626C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.720C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2978C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*279C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.340C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1261C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.158C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.928C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.828C>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4596
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2525
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg393Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

3-49723365-C-CGGTACTGCTCCCCTGCGCCGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723365
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723386
    reference: chr 3
allele count: 2
allele frequency: 1.749322137671652e-5
allele num: 114330
alternate allele: CGGTACTGCTCCCCTGCGCCGT
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsp: ENSP00000414287.2:p.His386_Tyr392dup
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1243
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His386_Tyr392dup
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

3-49723365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723365
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723365
    reference: chr 3
allele count: 9
allele frequency: 7.871949619522436e-5
allele num: 114330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.719G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*278G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.927G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1178G>A
  hgvsp: ENSP00000414287.2:p.Arg393His
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.625G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.550G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1260G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2977G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.935G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.157G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.827G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.339G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2705
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg393His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/3-49723375-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723375
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723375
    reference: chr 3
allele count: 1
allele frequency: 8.821765058752955e-6
allele num: 113356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.540G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.925G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1168G>T
  hgvsp: ENSP00000414287.2:p.Glu390Ter
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.709G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*268G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.917G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1250G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.615G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.817G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.329G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.147G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2967G>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu390Ter
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

3-49723376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723376
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723376
    reference: chr 3
allele count: 291
allele frequency: 2.568447810199651e-3
allele num: 113298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1167G>A
  hgvsp: ENST00000449682.2:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.614G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.328G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.916G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.924G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.708G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*267G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.146G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2966G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1249G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.816G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.539G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5986
  bin: 2.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 11581
  bin: 3.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13841
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 3.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
hgvs: p.Gly389Gly
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum

3-49723379-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723379
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723379
    reference: chr 3
allele count: 6269
allele frequency: 7.245556043549617e-2
allele num: 86522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*264A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.921A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1246A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.536A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2963A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.143A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.611A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.705A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.913A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.813A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1164A>G
  hgvsp: ENST00000449682.2:c.1164A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.325A>G
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13190
  bin: 2.75e1
  variant carriers: 1366
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 2.25e1
  variant carriers: 897
genotype depth: GenotypeDepth
  all individuals: 7287
  bin: 3.75e1
  variant carriers: 1214
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 4.25e1
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 7.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 4.75e1
  variant carriers: 524
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 1.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 1.75e1
  variant carriers: 474
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 5.25e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.25e1
  variant carriers: 114
genotype quality: GenotypeQuality
hgvs: p.Ala388Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

3-49723383-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723383
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723383
    reference: chr 3
allele count: 1
allele frequency: 8.933995640210128e-6
allele num: 111932
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1160G>A
  hgvsp: ENSP00000414287.2:p.Gly387Asp
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.701G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.139G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.909G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.809G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.532G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.321G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.917G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.607G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1242G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*260G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2959G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly387Asp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

3-49723385-GTGGTAGCAGTCTGTGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723385
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723368
    reference: chr 3
allele count: 22
allele frequency: 1.973696014928319e-4
allele num: 111466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: 3_prime_UTR_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice acceptor
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11103
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15941
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1148-7_1157delGCCACAGACTGCTACCA
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: GTGGTAGCAGTCTGTGGC
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

3-49723385-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723385
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723385
    reference: chr 3
allele count: 6
allele frequency: 5.38280731344087e-5
allele num: 111466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*258C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.699C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.137C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1158C>G
  hgvsp: ENSP00000414287.2:p.His386Gln
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.530C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.807C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.605C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2957C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.319C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.915C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1240C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.907C>G
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7011
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11103
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His386Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

3-49723388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723388
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723388
    reference: chr 3
allele count: 1
allele frequency: 9.016807328860996e-6
allele num: 110904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1155C>T
  hgvsp: ENST00000449682.2:c.1155C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.904C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*255C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2954C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.527C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.804C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1237C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.696C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.912C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.134C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.316C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.602C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr385Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

3-49723389-TAGC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723389
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723386
    reference: chr 3
allele count: 1
allele frequency: 9.012419113538457e-6
allele num: 110958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2950_2952delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1233_1235delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.908_910delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.523_525delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.800_802delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.692_694delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*251_*253delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.900_902delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1151_1153delGCT
  hgvsp: ENSP00000414287.2:p.Cys384del
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.312_314delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.598_600delGCT
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.130_132delGCT
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys384del
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: TAGC
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

3-49723390-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723390
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723390
    reference: chr 3
allele count: 1
allele frequency: 9.010632546404758e-6
allele num: 110980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1235T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.694T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.802T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*253T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.600T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.525T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1153T>A
  hgvsp: ENSP00000414287.2:p.Tyr385Asn
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2952T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.132T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.314T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.910T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.902T>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14601
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr385Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

3-49723394-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723394
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723394
    reference: chr 3
allele count: 1
allele frequency: 9.159690036089179e-6
allele num: 109174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1231C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.596C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.690C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*249C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.798C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1149C>G
  hgvsp: ENSP00000414287.2:p.Asp383Glu
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2948C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.310C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.128C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.906C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.898C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.521C>G
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp383Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

3-49723396-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723396
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723396
    reference: chr 3
allele count: 2
allele frequency: 1.859807695884246e-5
allele num: 107538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-1G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.904G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.796G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-1G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1229G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.519G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-1G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.308G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-1G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.688G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2946G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-1G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8246
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.1148-1G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum

3-49723399-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723399
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723399
    reference: chr 3
allele count: 2
allele frequency: 2.682835220260772e-5
allele num: 74548
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.516A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.793A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2943A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-4A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-4A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.685A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-4A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.305A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-4A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.901A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-4A>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1226A>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1148-4A>T
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

3-49723399-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723399
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723399
    reference: chr 3
allele count: 6777
allele frequency: 9.090787143853625e-2
allele num: 74548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-4A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-4A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-4A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1226A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-4A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2943A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.685A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-4A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.793A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.305A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.901A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.516A>G
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 10429
  bin: 1.25e1
  variant carriers: 387
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 1.75e1
  variant carriers: 1089
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 2.25e1
  variant carriers: 1712
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.75e1
  variant carriers: 1937
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 3.75e1
  variant carriers: 792
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 3.25e1
  variant carriers: 1412
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
hgvs: c.1148-4A>G
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

3-49723399-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723399
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723399
    reference: chr 3
allele count: 1
allele frequency: 1.341417610130386e-5
allele num: 74548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-4A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.305A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-4A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.901A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-4A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-4A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.793A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-4A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2943A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.685A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.516A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1226A>C
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 9449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7775
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1148-4A>C
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

3-49723400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723400
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723400
    reference: chr 3
allele count: 1
allele frequency: 9.78320419503796e-6
allele num: 102216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-5C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2942C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1225C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.515C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.792C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-5C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-5C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-5C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-5C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.684C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.304C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.900C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1148-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

3-49723403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723403
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 96458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2939C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-8C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-8C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.512C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-8C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-8C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.789C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-8C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.897C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.681C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1222C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.301C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1148-8C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum

3-49723403-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723403
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723403
    reference: chr 3
allele count: 784
allele frequency: 8.127889858798648e-3
allele num: 96458
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2939C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.681C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1222C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-8C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-8C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.512C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-8C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.301C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-8C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-8C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.897C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.789C>G
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 3.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13791
  bin: 1.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 2.75e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 3.25e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 1.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 4.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
hgvs: c.1148-8C>G
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

3-49723404-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723404
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723404
    reference: chr 3
allele count: 1
allele frequency: 9.843682324684018e-6
allele num: 101588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-9C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.896C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.511C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-9C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-9C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.788C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2938C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1221C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.680C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.300C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-9C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-9C>G
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15181
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

3-49723406-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723406
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723406
    reference: chr 3
allele count: 18
allele frequency: 1.959631589261219e-4
allele num: 91854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.298A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-11A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.894A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1219A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.509A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-11A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.678A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2936A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-11A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.786A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-11A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-11A>C
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15875
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP

3-49723409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723409
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723409
    reference: chr 3
allele count: 2301
allele frequency: 3.307269957167908e-2
allele num: 69574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.506C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.783C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.295C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-14C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-14C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2933C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-14C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-14C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-14C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.675C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1216C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.891C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2584
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7317
  bin: 2.75e1
  variant carriers: 454
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16397
  bin: 1.25e1
  variant carriers: 449
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13450
  bin: 1.75e1
  variant carriers: 702
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 7.5e0
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.25e1
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 2.25e1
  variant carriers: 690
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

3-49723414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723414
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723414
    reference: chr 3
allele count: 1
allele frequency: 1.064622591291387e-5
allele num: 93930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-19C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-19C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.501C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.778C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-19C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.886C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.670C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-19C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.290C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2928C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1211C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-19C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11710
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/3-49723423-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723423
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723423
    reference: chr 3
allele count: 1
allele frequency: 1.088257699423223e-5
allele num: 91890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1202G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.492G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.281G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2919G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.661G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-28G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.877G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.769G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-28G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-28G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-28G>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-28G>T
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

3-49723432-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723432
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723432
    reference: chr 3
allele count: 17
allele frequency: 1.906556310701389e-4
allele num: 89166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.272G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2910G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-37G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.483G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1193G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-37G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-37G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.760G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-37G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.868G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-37G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.652G>C
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19033
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4025
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10971
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1612
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6720
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

3-49723434-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723434
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723434
    reference: chr 3
allele count: 1
allele frequency: 1.114404796398244e-5
allele num: 89734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.866G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-39G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.758G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.270G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.481G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.650G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1191G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2908G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-39G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-39G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-39G>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-39G>C
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18942
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12558
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

3-49723440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723440
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723440
    reference: chr 3
allele count: 1
allele frequency: 1.108327976414781e-5
allele num: 90226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2902G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.475G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.264G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.860G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.644G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.752G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1185G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

3-49723442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723442
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723442
    reference: chr 3
allele count: 1
allele frequency: 1.102244169128345e-5
allele num: 90724
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-47G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-47G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.642G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.473G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2900G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.858G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-47G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1183G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-47G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.750G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-47G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.262G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10697
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

3-49723443-T-TCCGGTTCCAGGCTTCCAGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723443
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723462
    reference: chr 3
allele count: 1
allele frequency: 1.105363222354866e-5
allele num: 90468
alternate allele: TCCGGTTCCAGGCTTCCAGC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 11358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18229
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

3-49723444-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723444
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723444
    reference: chr 3
allele count: 533
allele frequency: 7.415961709706144e-3
allele num: 71872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2898G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.595-49G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*248-49G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.640G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.748G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1148-49G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.856G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.127-49G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.897-49G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.471G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.260G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1181G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 2.25e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 2.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 16774
  bin: 1.25e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 12370
  bin: 1.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 10432
  bin: 7.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum

3-49723446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723446
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723446
    reference: chr 3
allele count: 2
allele frequency: 2.179551448311937e-5
allele num: 91762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.469C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.258C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.854C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.638C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+49C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2896C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+49C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.746C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1179C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+49C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+49C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+49C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10542
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17078
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-49723450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723450
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723450
    reference: chr 3
allele count: 23
allele frequency: 2.490201598059808e-4
allele num: 92362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2892G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1175G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.634G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.742G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.850G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.465G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+45G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.254G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16451
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12307
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11038
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

3-49723456-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723456
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723456
    reference: chr 3
allele count: 1
allele frequency: 1.072225081489106e-5
allele num: 93264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2886A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+39A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.248A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1169A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+39A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+39A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.459A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.844A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.736A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+39A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+39A>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.628A>C
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

3-49723459-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723459
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723459
    reference: chr 3
allele count: 1
allele frequency: 1.071880292408944e-5
allele num: 93294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.841G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.456G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+36G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.733G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.625G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.245G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+36G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+36G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2883G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+36G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+36G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1166G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

3-49723460-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723460
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723460
    reference: chr 3
allele count: 1
allele frequency: 1.067691650651292e-5
allele num: 93660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.455T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.624T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+35T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+35T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2882T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1165T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.732T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+35T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.244T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+35T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+35T>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.840T>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16718
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10695
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

3-49723461-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723461
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723462
    reference: chr 3
allele count: 16
allele frequency: 1.784837802864665e-4
allele num: 89644
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.838dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2880dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+33dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+33dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.730dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+33dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.242dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.453dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1163dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.622dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+33dupG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+33dupG
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2407
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7766
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13978
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16459
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

3-49723463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723463
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723463
    reference: chr 3
allele count: 2
allele frequency: 2.111664836557142e-5
allele num: 94712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+32G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+32G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.729G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+32G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+32G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.241G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1162G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.452G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2879G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.621G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+32G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.837G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

3-49723472-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723472
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723472
    reference: chr 3
allele count: 0
allele frequency: 0.0e0
allele num: 96918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+23A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+23A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+23A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+23A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.232A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+23A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1153A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2870A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.720A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.828A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.612A>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.443A>G
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9554
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

3-49723474-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723474
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723473
    reference: chr 3
allele count: 1
allele frequency: 1.028383381324558e-5
allele num: 97240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+20delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2867delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.825delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.229delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1150delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.717delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.609delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+20delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.440delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+20delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+20delG
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+20delG
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4508
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: GC
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

3-49723475-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723475
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723475
    reference: chr 3
allele count: 2
allele frequency: 2.051324129725738e-5
allele num: 97498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+20G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.229G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1150G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+20G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2867G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.609G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.825G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+20G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+20G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.717G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.440G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+20G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23501
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2158
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

3-49723479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723479
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723479
    reference: chr 3
allele count: 1
allele frequency: 1.014301653311695e-5
allele num: 98590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.605G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.225G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+16G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+16G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+16G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.713G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+16G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+16G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.436G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2863G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1146G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.821G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

3-49723481-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723481
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723481
    reference: chr 3
allele count: 1
allele frequency: 1.008633906237392e-5
allele num: 99144
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.711T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+14T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2861T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.819T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+14T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1144T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.603T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+14T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+14T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+14T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.434T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.223T>C
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

3-49723483-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723483
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723481
    reference: chr 3
allele count: 33
allele frequency: 3.312720848056537e-4
allele num: 99616
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1147+10_1147+11delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.707_708delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.430_431delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.896+10_896+11delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.599_600delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.815_816delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1140_1141delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2857_2858delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.594+10_594+11delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.219_220delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.126+10_126+11delAA
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*247+10_*247+11delAA
  variant of: http://identifiers.org/hgnc/7380
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26192
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8545
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7872
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: CTT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

3-49723496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723496
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723496
    reference: chr 3
allele count: 1
allele frequency: 9.802383939774152e-6
allele num: 102016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.419G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*246G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.588G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.593G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1146G>A
  hgvsp: ENST00000449682.2:c.1146G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.696G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.125G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2846G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1129G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.208G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.895G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.804G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7435
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6884
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1146G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

3-49723498-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723498
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723498
    reference: chr 3
allele count: 2
allele frequency: 1.952209901608621e-5
allele num: 102448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.694C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.206C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.586C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.123C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*244C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1127C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.591C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1144C>T
  hgvsp: ENSP00000414287.2:p.Gln382Ter
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.417C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.802C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2844C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.893C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27830
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln382Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

3-49723499-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723499
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723499
    reference: chr 3
allele count: 1
allele frequency: 9.745638826625085e-6
allele num: 102610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.801C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*243C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.892C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.205C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.590C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1143C>T
  hgvsp: ENST00000449682.2:c.1143C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.122C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.416C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.585C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2843C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1126C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.693C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro381Pro
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

3-49723505-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723505
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723505
    reference: chr 3
allele count: 2
allele frequency: 1.92949620853995e-5
allele num: 103654
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.116G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1137G>A
  hgvsp: ENST00000449682.2:c.1137G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.579G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.410G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2837G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1120G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.199G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.687G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.584G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*237G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.886G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.795G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val379Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

3-49723510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723510
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723510
    reference: chr 3
allele count: 2
allele frequency: 1.915855621120392e-5
allele num: 104392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.194G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.790G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1115G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.574G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*232G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.579G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.881G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1132G>A
  hgvsp: ENSP00000414287.2:p.Asp378Asn
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2832G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.111G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.405G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.682G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5911
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp378Asn
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

3-49723515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723515
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723515
    reference: chr 3
allele count: 5
allele frequency: 4.767989624854577e-5
allele num: 104866
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1127C>T
  hgvsp: ENSP00000414287.2:p.Thr376Ile
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.785C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1110C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.400C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.106C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.569C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*227C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2827C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.189C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.876C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.677C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.574C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28318
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr376Ile
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-49723515-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723515
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723515
    reference: chr 3
allele count: 6
allele frequency: 5.721587549825491e-5
allele num: 104866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.189C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.106C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.677C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1110C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.574C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*227C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.876C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.569C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1127C>G
  hgvsp: ENSP00000414287.2:p.Thr376Arg
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.785C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.400C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2827C>G
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28318
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Thr376Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

3-49723518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723518
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723518
    reference: chr 3
allele count: 35
allele frequency: 3.325858071382416e-4
allele num: 105236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1107G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.103G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.873G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.566G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.782G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.674G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.571G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.186G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*224G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2824G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.397G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1124G>A
  hgvsp: ENSP00000414287.2:p.Cys375Tyr
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28478
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10640
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys375Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

3-49723519-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723519
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723519
    reference: chr 3
allele count: 1
allele frequency: 9.484066767830045e-6
allele num: 105440
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.396T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.102T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.872T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.565T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.570T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1123T>C
  hgvsp: ENSP00000414287.2:p.Cys375Arg
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.673T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1106T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.185T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.781T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*223T>C
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2823T>C
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys375Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

3-49723521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723521
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723521
    reference: chr 3
allele count: 1
allele frequency: 9.472387989012029e-6
allele num: 105570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1104G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*221G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2821G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.870G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.568G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1121G>A
  hgvsp: ENSP00000414287.2:p.Arg374His
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.100G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.394G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.563G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.183G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.671G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.779G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10732
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg374His
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

3-49723525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723525
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723525
    reference: chr 3
allele count: 1
allele frequency: 9.446260225576694e-6
allele num: 105862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.179C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1117C>T
  hgvsp: ENSP00000414287.2:p.Arg373Trp
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1100C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.96C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*217C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.564C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2817C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.866C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.559C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.667C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.390C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.775C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg373Trp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

3-49723525-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723525
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723525
    reference: chr 3
allele count: 2
allele frequency: 1.889252045115339e-5
allele num: 105862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.667C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1100C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.559C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*217C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1117C>A
  hgvsp: ENST00000449682.2:c.1117C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.96C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.390C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.866C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.564C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.775C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.179C>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2817C>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg373Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

3-49723529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723529
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723529
    reference: chr 3
allele count: 1
allele frequency: 9.372422583789458e-6
allele num: 106696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2813G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.555G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*213G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1096G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.92G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.560G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.386G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.771G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.663G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1113G>A
  hgvsp: ENST00000449682.2:c.1113G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.862G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.175G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln371Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

3-49723542-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723542
    reference: chr 3
allele count: 50
allele frequency: 4.738707659647061e-4
allele num: 105514
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.650C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.373C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1083C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.542C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*200C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.162C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.758C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2800C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.79C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1100C>G
  hgvsp: ENSP00000414287.2:p.Ala367Gly
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.849C>G
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.547C>G
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 25834
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Ala367Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

3-49723542-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723542
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723542
    reference: chr 3
allele count: 4
allele frequency: 3.790966127717649e-5
allele num: 105514
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.547C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.373C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.758C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1100C>T
  hgvsp: ENSP00000414287.2:p.Ala367Val
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.542C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.650C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*200C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2800C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.79C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.849C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.162C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1083C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25834
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12235
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala367Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

3-49723543-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723543
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723543
    reference: chr 3
allele count: 2
allele frequency: 1.858183439869184e-5
allele num: 107632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1082G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.541G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.757G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1099G>A
  hgvsp: ENSP00000414287.2:p.Ala367Thr
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.372G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2799G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.649G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.161G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.546G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*199G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.848G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.78G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12401
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4845
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala367Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

3-49723545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723545
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723545
    reference: chr 3
allele count: 49
allele frequency: 4.626569729015202e-4
allele num: 105910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.539C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.370C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1080C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1097C>T
  hgvsp: ENSP00000414287.2:p.Ala366Val
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.159C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*197C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.846C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.755C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2797C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.76C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.647C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.544C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12429
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala366Val
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

3-49723546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723546
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723546
    reference: chr 3
allele count: 6
allele frequency: 5.56792873051225e-5
allele num: 107760
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.158G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.543G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1079G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.845G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.369G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.538G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*196G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.75G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.646G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2796G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1096G>A
  hgvsp: ENSP00000414287.2:p.Ala366Thr
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.754G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25519
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12478
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala366Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

3-49723548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723548
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723548
    reference: chr 3
allele count: 1
allele frequency: 9.275921562807265e-6
allele num: 107806
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.73G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.367G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.156G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.536G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2794G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.541G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.752G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.644G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1094G>A
  hgvsp: ENSP00000414287.2:p.Arg365His
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*194G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1077G>A
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.843G>A
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg365His
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

3-49723549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 49723549
    reference: chr 3
  end: Position
    type: ExactPosition
    position: 49723549
    reference: chr 3
allele count: 3
allele frequency: 2.788570578721347e-5
allele num: 107582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000479115
  gene symbol: MST1
  hgvsc: ENST00000479115.1:n.535C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000497359
  gene symbol: MST1
  hgvsc: ENST00000497359.1:n.751C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000480268
  gene symbol: MST1
  hgvsc: ENST00000480268.1:n.155C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484673
  gene symbol: MST1
  hgvsc: ENST00000484673.1:n.1076C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000494809
  gene symbol: MST1
  hgvsc: ENST00000494809.1:n.540C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000489007
  gene symbol: MST1
  hgvsc: ENST00000489007.1:n.366C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000484269
  gene symbol: MST1
  hgvsc: ENST00000484269.1:n.842C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000373234
  ensembl transcript: ENST00000383728
  gene symbol: MST1
  hgvsc: ENST00000383728.3:c.*193C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000488350
  gene symbol: MST1
  hgvsc: ENST00000488350.2:n.2793C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000468847
  gene symbol: MST1
  hgvsc: ENST00000468847.1:n.72C>T
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000173531
  ensembl protein: ENSP00000414287
  ensembl transcript: ENST00000449682
  gene symbol: MST1
  hgvsc: ENST00000449682.2:c.1093C>T
  hgvsp: ENSP00000414287.2:p.Arg365Cys
  variant of: http://identifiers.org/hgnc/7380
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000173531
  ensembl transcript: ENST00000492329
  gene symbol: MST1
  hgvsc: ENST00000492329.1:n.643C>T
  variant of: http://identifiers.org/hgnc/7380
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12568
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25207
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg365Cys
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 788
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8902
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7933
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3014
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 11
allele frequency: 1.232907419861018e-3
allele num: 8922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591951095262354e-5
allele num: 62816
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.92653e6

QD
type: SiteQuality
SIO_000300: 7.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.836e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.284e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.52e-1

FS
type: SiteQuality
SIO_000300: 6.377e0

MQRankSum
type: SiteQuality
SIO_000300: -9.93e-1

MQ
type: SiteQuality
SIO_000300: 4.488e1

GenotypeDepth
all individuals: 130
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3232
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 695
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7905
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4301
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8815
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.892966360856269e-4
allele num: 16350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62710
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.706e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQ
type: SiteQuality
SIO_000300: 4.604e1

DP
type: SiteQuality
SIO_000300: 1.910378e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.105e0

VQSLOD
type: SiteQuality
SIO_000300: -3.428e0

FS
type: SiteQuality
SIO_000300: 4.949e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

GenotypeDepth
all individuals: 779
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7910
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4296
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.574833174451859e-4
allele num: 8392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: 2.07e0

VQSLOD
type: SiteQuality
SIO_000300: 8.51e-1

FS
type: SiteQuality
SIO_000300: 5.404e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

MQ
type: SiteQuality
SIO_000300: 4.956e1

DP
type: SiteQuality
SIO_000300: 1.889904e6

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

GenotypeDepth
all individuals: 192
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7904
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 4255
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62402
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.555661729574773e-4
allele num: 8372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.864e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e0

QD
type: SiteQuality
SIO_000300: 1.751e1

VQSLOD
type: SiteQuality
SIO_000300: -3.758e0

FS
type: SiteQuality
SIO_000300: 1.2933e1

DP
type: SiteQuality
SIO_000300: 1.862858e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 4.729e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.107e0

GenotypeQuality
all individuals: 571
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19304
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3856
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1068
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3192
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7903
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 1
allele frequency: 8.826125330979699e-5
allele num: 11330
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603849238171612e-5
allele num: 62350
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.855131e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 1.6368e1

QD
type: SiteQuality
SIO_000300: 7.9e0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.092e0

VQSLOD
type: SiteQuality
SIO_000300: -1.626e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQ
type: SiteQuality
SIO_000300: 4.788e1

GenotypeDepth
all individuals: 192
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7903
bin: 9.75e1
variant carriers: 9

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.603849238171612e-5
allele num: 62350
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.557945041816009e-4
allele num: 8370
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.855131e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 1.6368e1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e0

MQ
type: SiteQuality
SIO_000300: 4.788e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.092e0

QD
type: SiteQuality
SIO_000300: 7.9e0

VQSLOD
type: SiteQuality
SIO_000300: -1.626e0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3168
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variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.138735420503377e-5
allele num: 16290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.221e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.99e-1

DP
type: SiteQuality
SIO_000300: 1.802716e6

QD
type: SiteQuality
SIO_000300: 1.035e1

MQ
type: SiteQuality
SIO_000300: 5.584e1

GenotypeDepth
all individuals: 123
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4798
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8076
bin: 9.75e1
variant carriers: 286

GenotypeQuality
all individuals: 492
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variant carriers: 1

GenotypeQuality
all individuals: 1523
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variant carriers: 2

GenotypeQuality
all individuals: 7379
bin: 6.75e1
variant carriers: 2

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3151
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variant carriers: 0

GenotypeQuality
all individuals: 653
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1202
bin: 4.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1202
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4042
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2241
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.789717461787865e-4
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.213385407420558e-4
allele num: 11266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 27
allele frequency: 4.313099041533546e-3
allele num: 6260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 252
allele frequency: 4.084543568464731e-3
allele num: 61696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

QD
type: SiteQuality
SIO_000300: 1.334e1

MQ
type: SiteQuality
SIO_000300: 5.354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.521e0

VQSLOD
type: SiteQuality
SIO_000300: -2.096e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

FS
type: SiteQuality
SIO_000300: 6.62e-1

DP
type: SiteQuality
SIO_000300: 1.800299e6

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

GenotypeDepth
all individuals: 11507
bin: 3.25e1
variant carriers: 1464

GenotypeQuality
all individuals: 2004
bin: 4.75e1
variant carriers: 363

GenotypeQuality
all individuals: 4258
bin: 6.75e1
variant carriers: 272

GenotypeQuality
all individuals: 2712
bin: 3.25e1
variant carriers: 393

GenotypeQuality
all individuals: 2370
bin: 1.75e1
variant carriers: 438

GenotypeQuality
all individuals: 3349
bin: 7.5e0
variant carriers: 442

GenotypeQuality
all individuals: 2288
bin: 1.25e1
variant carriers: 434

GenotypeQuality
all individuals: 2207
bin: 3.75e1
variant carriers: 416

GenotypeQuality
all individuals: 6056
bin: 2.25e1
variant carriers: 469

GenotypeQuality
all individuals: 2408
bin: 9.75e1
variant carriers: 1448

GenotypeQuality
all individuals: 7719
bin: 2.5e0
variant carriers: 339

GenotypeQuality
all individuals: 1893
bin: 5.75e1
variant carriers: 311

GenotypeQuality
all individuals: 2840
bin: 2.75e1
variant carriers: 478

GenotypeQuality
all individuals: 11210
bin: 6.25e1
variant carriers: 310

GenotypeQuality
all individuals: 557
bin: 8.75e1
variant carriers: 190

GenotypeQuality
all individuals: 1487
bin: 7.75e1
variant carriers: 256

GenotypeQuality
all individuals: 549
bin: 9.25e1
variant carriers: 167

GenotypeQuality
all individuals: 1989
bin: 5.25e1
variant carriers: 362

GenotypeQuality
all individuals: 1997
bin: 4.25e1
variant carriers: 396

GenotypeQuality
all individuals: 1670
bin: 7.25e1
variant carriers: 263

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 210

European (Finnish)
type: Population
allele count: 592
allele frequency: 1.426506024096386e-1
allele num: 4150
num of homozygotes: 0

African
type: Population
allele count: 532
allele frequency: 8.320300281513919e-2
allele num: 6394
num of homozygotes: 0

Other
type: Population
allele count: 50
allele frequency: 7.48502994011976e-2
allele num: 668
num of homozygotes: 0

South Asian
type: Population
allele count: 507
allele frequency: 3.616778427735768e-2
allele num: 14018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3044
allele frequency: 6.474391696443764e-2
allele num: 47016
num of homozygotes: 0

Latino
type: Population
allele count: 815
allele frequency: 1.016716566866267e-1
allele num: 8016
num of homozygotes: 0

East Asian
type: Population
allele count: 729
allele frequency: 1.164536741214058e-1
allele num: 6260
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.182e1

MQRankSum
type: SiteQuality
SIO_000300: -3.008e0

VQSLOD
type: SiteQuality
SIO_000300: 8.699999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-1

QD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 2.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.659e0

DP
type: SiteQuality
SIO_000300: 1.792817e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeDepth
all individuals: 193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2125
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 100
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 390
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GenotypeQuality
all individuals: 1250
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GenotypeQuality
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GenotypeQuality
all individuals: 1325
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variant carriers: 0

GenotypeQuality
all individuals: 607
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GenotypeQuality
all individuals: 24896
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variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 7.5e0
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GenotypeQuality
all individuals: 1503
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.642629521337758e-5
allele num: 60878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 1.567705e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.069e0

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-2

QD
type: SiteQuality
SIO_000300: 1.047e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 5.481e1

VQSLOD
type: SiteQuality
SIO_000300: -9.637e-1

GenotypeQuality
all individuals: 1521
bin: 9.75e1
variant carriers: 21

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1288
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variant carriers: 1

GenotypeQuality
all individuals: 23895
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.628207665413286e-4
allele num: 60636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.251e1

FS
type: SiteQuality
SIO_000300: 9.807e0

DP
type: SiteQuality
SIO_000300: 1.553659e6

ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60636
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.388898868331237e-4
allele num: 11134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16142
num of homozygotes: 0

East Asian
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allele count: 0
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Other
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DP
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SIO_000300: 1.553659e6

BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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SIO_000300: 6.7e-3

FS
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ClippingRankSum
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SIO_000300: -4.09e-1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.659310390601666e-5
allele num: 60266
num of homozygotes: 0

African
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South Asian
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DP
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MQRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 60302
num of homozygotes: 0

Latino
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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num of homozygotes: 0

FS
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
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MQ
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QD
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60310
num of homozygotes: 0

African
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allele frequency: 1.195600191296031e-4
allele num: 8364
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 5.105e0

ReadPosRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

Latino
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Other
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South Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.69090294217112e-5
allele num: 59140
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QD
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VQSLOD
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MQ
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

Latino
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allele frequency: 1.847745750184775e-4
allele num: 10824
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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African
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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QD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 3476
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European (Non-Finnish)
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allele frequency: 4.9838026414154e-5
allele num: 40130
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East Asian
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African
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South Asian
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Latino
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Other
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BaseQRankSum
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ReadPosRankSum
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DP
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VQSLOD
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FS
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InbreedingCoeff
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QD
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 365

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9678
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variant carriers: 386

African
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allele count: 584
allele frequency: 1.063364894391843e-1
allele num: 5492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 555
allele frequency: 1.596662830840046e-1
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num of homozygotes: 0

East Asian
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allele count: 694
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Other
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South Asian
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allele count: 601
allele frequency: 4.77287166454892e-2
allele num: 12592
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Latino
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allele count: 831
allele frequency: 1.181404606198465e-1
allele num: 7034
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3468
allele frequency: 8.641913780214304e-2
allele num: 40130
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QD
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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SIO_000300: 6.24e-1

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 40130
num of homozygotes: 0

African
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East Asian
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South Asian
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Latino
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Other
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MQ
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.814750290360046e-5
allele num: 55104
num of homozygotes: 0

Latino
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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FS
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MQRankSum
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e-1

VQSLOD
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MQRankSum
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MQ
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QD
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 11

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 6
allele frequency: 8.356545961002786e-3
allele num: 718
num of homozygotes: 0

European (Non-Finnish)
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allele count: 475
allele frequency: 9.164222873900294e-3
allele num: 51832
num of homozygotes: 0

Latino
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allele frequency: 1.427658214361816e-2
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num of homozygotes: 0

East Asian
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allele frequency: 1.632208922742111e-3
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South Asian
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allele frequency: 5.24123101733638e-3
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African
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allele count: 37
allele frequency: 5.148900640133593e-3
allele num: 7186
num of homozygotes: 0

European (Finnish)
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allele count: 42
allele frequency: 8.232065856526851e-3
allele num: 5102
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FS
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VQSLOD
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 54780
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South Asian
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Latino
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African
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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MQ
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MQRankSum
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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InbreedingCoeff
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FS
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 6572
num of homozygotes: 0

African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Other
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Latino
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QD
type: SiteQuality
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ClippingRankSum
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FS
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 243
allele frequency: 7.743785850860421e-2
allele num: 3138
num of homozygotes: 0

Other
type: Population
allele count: 19
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European (Non-Finnish)
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allele count: 1200
allele frequency: 3.188097768331562e-2
allele num: 37640
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South Asian
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allele frequency: 1.356558034997592e-2
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Latino
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allele frequency: 3.323076923076923e-2
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African
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allele count: 317
allele frequency: 6.951754385964912e-2
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East Asian
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allele count: 137
allele frequency: 2.885425442291491e-2
allele num: 4748
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
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SIO_000300: 5.273e1

InbreedingCoeff
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SIO_000300: -8.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 6.827e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 1.052308e6

MQRankSum
type: SiteQuality
SIO_000300: -2.67e0

QD
type: SiteQuality
SIO_000300: 2.64e0

GenotypeDepth
all individuals: 168
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variant carriers: 0

GenotypeQuality
all individuals: 6587
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1334
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.739452756436177e-5
allele num: 14838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQ
type: SiteQuality
SIO_000300: 5.667e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

BaseQRankSum
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SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: -5.706e-1

FS
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.88e-1

QD
type: SiteQuality
SIO_000300: 2.01e1

DP
type: SiteQuality
SIO_000300: 9.44518e5

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 4473
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 510
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.830601092896175e-5
allele num: 14640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.455e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.947e0

MQ
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SIO_000300: 5.153e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.002e0

ReadPosRankSum
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SIO_000300: -5.600000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 9.14232e5

QD
type: SiteQuality
SIO_000300: 3.9e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 6668
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 178
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GenotypeQuality
all individuals: 287
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variant carriers: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 4.528985507246377e-4
allele num: 4416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.92141396435875e-4
allele num: 47922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.098177026136613e-4
allele num: 9106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

FS
type: SiteQuality
SIO_000300: 2.0286e1

VQSLOD
type: SiteQuality
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MQRankSum
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SIO_000300: -2.41e0

MQ
type: SiteQuality
SIO_000300: 5.352e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.08e-1

DP
type: SiteQuality
SIO_000300: 9.01599e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.068936980179584e-5
allele num: 48334
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.07e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48590
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.907985631389887e-5
allele num: 14476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

FS
type: SiteQuality
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VQSLOD
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DP
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14502
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9276
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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BaseQRankSum
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DP
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.048005242893422e-5
allele num: 48828
num of homozygotes: 0

African
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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FS
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 68

GenotypeQuality
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variant carriers: 24

GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 32

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 408
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GenotypeQuality
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bin: 6.75e1
variant carriers: 33

Other
type: Population
allele count: 5
allele frequency: 9.689922480620155e-3
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 26
allele frequency: 2.050796655623916e-3
allele num: 12678
num of homozygotes: 0

African
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allele count: 88
allele frequency: 1.887601887601888e-2
allele num: 4662
num of homozygotes: 0

Latino
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allele count: 34
allele frequency: 4.617055947854427e-3
allele num: 7364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 288
allele frequency: 7.481296758104738e-3
allele num: 38496
num of homozygotes: 0

East Asian
type: Population
allele count: 30
allele frequency: 5.971337579617835e-3
allele num: 5024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 62
allele frequency: 1.979565772669221e-2
allele num: 3132
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.278e1

MQRankSum
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InbreedingCoeff
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SIO_000300: -4.79e-2

DP
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ReadPosRankSum
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SIO_000300: -4.6e-1

ClippingRankSum
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SIO_000300: -1.509e0

MQ
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SIO_000300: 5.223e1

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.106e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.174e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 17536
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2420
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4550
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.041383769802781e-5
allele num: 49488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: -1.125e0

InbreedingCoeff
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SIO_000300: -7.3e-3

MQ
type: SiteQuality
SIO_000300: 5.539e1

ClippingRankSum
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SIO_000300: -8.72e-1

DP
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SIO_000300: 9.51549e5

QD
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SIO_000300: 8.34e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 129
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GenotypeQuality
all individuals: 279
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variant carriers: 23

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6724
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.054407423028258e-4
allele num: 9484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 4.21162408246761e-4
allele num: 49862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.16169476869866e-4
allele num: 4626
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

FS
type: SiteQuality
SIO_000300: 5.2e-1

VQSLOD
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SIO_000300: -9.151e-1

BaseQRankSum
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SIO_000300: -1.919e0

ClippingRankSum
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SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 9.63879e5

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

MQ
type: SiteQuality
SIO_000300: 5.665e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.985308715505261e-5
allele num: 50370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -6.6e-3

QD
type: SiteQuality
SIO_000300: 1.172e1

DP
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SIO_000300: 9.87625e5

VQSLOD
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SIO_000300: -1.382e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.629e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 182
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GenotypeQuality
all individuals: 823
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50424
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4670
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.467997651203758e-4
allele num: 6812
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.386e-1

DP
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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ClippingRankSum
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SIO_000300: -3.69e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14662
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.974801532445989e-5
allele num: 50638
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQRankSum
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SIO_000300: -4.85e-1

InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ClippingRankSum
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DP
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9284
num of homozygotes: 0

Other
type: Population
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European (Finnish)
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allele frequency: 4.666355576294914e-4
allele num: 4286
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.64561648907722e-4
allele num: 48614
num of homozygotes: 0

East Asian
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African
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allele num: 6200
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South Asian
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allele frequency: 3.550632012498224e-4
allele num: 14082
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14734
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.899091511677779e-5
allele num: 51294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: 6.17e-1

BaseQRankSum
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MQRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -6.3e-3

FS
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SIO_000300: 9.553000000000001e0

MQ
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SIO_000300: 5.391e1

ReadPosRankSum
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SIO_000300: -3.35e-1

DP
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SIO_000300: 1.031336e6

QD
type: SiteQuality
SIO_000300: 9.48e0

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 52554
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.616e1

QD
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FS
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SIO_000300: 2.808e0

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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SIO_000300: -5.8e-3

MQRankSum
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BaseQRankSum
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DP
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SIO_000300: 1.087203e6

ClippingRankSum
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SIO_000300: -8.76e-1

GenotypeDepth
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.895447135979378e-5
allele num: 52758
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.745e1

ReadPosRankSum
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SIO_000300: 4.49e-1

MQRankSum
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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DP
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FS
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.067e1

BaseQRankSum
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SIO_000300: 1.35e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4878
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.778575477045154e-5
allele num: 52930
num of homozygotes: 0

East Asian
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-1

VQSLOD
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MQ
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SIO_000300: 5.443e1

ReadPosRankSum
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FS
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SIO_000300: 5.85e0

BaseQRankSum
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SIO_000300: -2.033e0

ClippingRankSum
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SIO_000300: -3.2e-2

DP
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SIO_000300: 1.104555e6

QD
type: SiteQuality
SIO_000300: 7.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6884
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.365747063643813e-4
allele num: 7322
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
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InbreedingCoeff
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FS
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MQRankSum
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DP
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VQSLOD
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QD
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ClippingRankSum
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SIO_000300: 6.27e-1

BaseQRankSum
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SIO_000300: 1.35e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 9.725734292939116e-5
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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num of homozygotes: 0

Other
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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MQRankSum
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FS
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 23
allele frequency: 4.250286432346528e-4
allele num: 54114
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 7484
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African
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allele frequency: 1.43348623853211e-4
allele num: 6976
num of homozygotes: 0

Other
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South Asian
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allele frequency: 1.332800213248034e-4
allele num: 15006
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Latino
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allele frequency: 5.803830528148578e-4
allele num: 10338
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European (Finnish)
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allele num: 4982
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.433962264150943e-5
allele num: 10600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.147e0

QD
type: SiteQuality
SIO_000300: 7.46e0

DP
type: SiteQuality
SIO_000300: 1.193337e6

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 5.492e1

GenotypeDepth
all individuals: 387
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9667
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1205
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55734
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.780867630700779e-4
allele num: 7192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.428e0

MQ
type: SiteQuality
SIO_000300: 5.701e1

BaseQRankSum
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SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.296e0

MQRankSum
type: SiteQuality
SIO_000300: 9.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.198936e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

QD
type: SiteQuality
SIO_000300: 1.019e1

GenotypeDepth
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 1156
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
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variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7210
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.534239414532148e-5
allele num: 15304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.538e1

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

QD
type: SiteQuality
SIO_000300: 1.731e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

FS
type: SiteQuality
SIO_000300: 1.348e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.777e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.264e0

DP
type: SiteQuality
SIO_000300: 1.201532e6

GenotypeDepth
all individuals: 27966
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variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31962
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GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.544716599907838e-5
allele num: 56422
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

FS
type: SiteQuality
SIO_000300: 6.326e0

VQSLOD
type: SiteQuality
SIO_000300: -1.827e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.846e0

MQ
type: SiteQuality
SIO_000300: 5.476e1

DP
type: SiteQuality
SIO_000300: 1.219544e6

GenotypeDepth
all individuals: 9
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
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variant carriers: 0

GenotypeQuality
all individuals: 4520
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 235
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variant carriers: 0

GenotypeQuality
all individuals: 9184
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variant carriers: 0

GenotypeQuality
all individuals: 999
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variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 32547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2030
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1387
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.759510152373579e-5
allele num: 56834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.909854851031322e-4
allele num: 5236
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.98e-1

DP
type: SiteQuality
SIO_000300: 1.232729e6

MQ
type: SiteQuality
SIO_000300: 5.115e1

QD
type: SiteQuality
SIO_000300: 1.073e1

VQSLOD
type: SiteQuality
SIO_000300: -1.315e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

GenotypeDepth
all individuals: 45
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variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.75258201169345e-5
allele num: 57126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.199e1

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.456e1

VQSLOD
type: SiteQuality
SIO_000300: -1.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.267e0

DP
type: SiteQuality
SIO_000300: 1.241317e6

GenotypeDepth
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1353
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 329
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.312335958005249e-3
allele num: 762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7484
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.235827077400983e-4
allele num: 15452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7966
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.456e1

QD
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeDepth
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variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 9.75e1
variant carriers: 35

Latino
type: Population
allele count: 1
allele frequency: 9.233610341643582e-5
allele num: 10830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7986
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 1.872417355371901e-3
allele num: 15488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
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African
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allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 8.719612151651495e-5
allele num: 57342
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
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SIO_000300: 1.297e1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -2.468e0

FS
type: SiteQuality
SIO_000300: 1.992e0

InbreedingCoeff
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SIO_000300: 1.0e-4

MQ
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SIO_000300: 5.486e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.52e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8004
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10844
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57462
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.449116471043467e-5
allele num: 15506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.46e-1

BaseQRankSum
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FS
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DP
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ReadPosRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

South Asian
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allele frequency: 6.448284756254837e-5
allele num: 15508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57552
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.252375e6

ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 5.4e-3

QD
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SIO_000300: 9.449999999999999e0

FS
type: SiteQuality
SIO_000300: 1.042e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.15e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.305483028720627e-4
allele num: 7660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57700
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.459e1

VQSLOD
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SIO_000300: -1.526e0

FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 5.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

QD
type: SiteQuality
SIO_000300: 6.78e0

DP
type: SiteQuality
SIO_000300: 1.262285e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.733102253032929e-5
allele num: 57700
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.443298969072165e-5
allele num: 15520
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.582e0

ClippingRankSum
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MQ
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SIO_000300: 5.459e1

BaseQRankSum
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SIO_000300: -8.87e-1

InbreedingCoeff
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SIO_000300: 5.7e-3

MQRankSum
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VQSLOD
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QD
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1509
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.718862800371275e-5
allele num: 58178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7784
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Other
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East Asian
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South Asian
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allele count: 0
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MQ
type: SiteQuality
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QD
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ClippingRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.164208626852205e-4
allele num: 57634
num of homozygotes: 0

South Asian
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allele frequency: 1.041531050644447e-3
allele num: 15362
num of homozygotes: 0

East Asian
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allele num: 8068
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Other
type: Population
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allele frequency: 2.652519893899204e-3
allele num: 754
num of homozygotes: 0

African
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allele count: 2
allele frequency: 2.590673575129534e-4
allele num: 7720
num of homozygotes: 0

European (Finnish)
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allele count: 2
allele frequency: 3.866976024748647e-4
allele num: 5172
num of homozygotes: 0

Latino
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allele num: 10804
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DP
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SIO_000300: 1.288683e6

MQ
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ReadPosRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.851166234727879e-4
allele num: 10804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 1.295336787564767e-4
allele num: 7720
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.735086927855086e-5
allele num: 57634
num of homozygotes: 0

South Asian
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QD
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.288683e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 2.2873e1

VQSLOD
type: SiteQuality
SIO_000300: -4.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.417e1

MQRankSum
type: SiteQuality
SIO_000300: -2.709e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8425
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31162
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4925
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.403560123889588e-5
allele num: 58762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15690
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.286079e6

VQSLOD
type: SiteQuality
SIO_000300: -1.691e0

MQ
type: SiteQuality
SIO_000300: 5.814e1

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 1.061e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.445e0

GenotypeDepth
all individuals: 25526
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1177
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1711
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 588
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 30710
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 488
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1563
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2152
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1409
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1003
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1350
bin: 5.25e1
variant carriers: 11

GenotypeQuality
all individuals: 4476
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 662
bin: 5.75e1
variant carriers: 3

Other
type: Population
allele count: 2
allele frequency: 2.645502645502645e-3
allele num: 756
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.691399040236249e-4
allele num: 10836
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.583979328165374e-4
allele num: 7740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.974425436322792e-4
allele num: 57870
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 1.039095986491752e-3
allele num: 15398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.835826620636747e-4
allele num: 5214
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: -4.596e0

FS
type: SiteQuality
SIO_000300: 2.5472e1

QD
type: SiteQuality
SIO_000300: 1.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 1.289265e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.214e0

MQ
type: SiteQuality
SIO_000300: 5.418e1

MQRankSum
type: SiteQuality
SIO_000300: -2.709e0

GenotypeDepth
all individuals: 8
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4911
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15708
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.460502366217692e-4
allele num: 10988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.576e1

FS
type: SiteQuality
SIO_000300: 5.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.340000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.282755e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 2.185e1

GenotypeDepth
all individuals: 3440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4921
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31047
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11014
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.23395853899309e-4
allele num: 8104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.266e0

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

DP
type: SiteQuality
SIO_000300: 1.28406e6

VQSLOD
type: SiteQuality
SIO_000300: -2.931e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

QD
type: SiteQuality
SIO_000300: 9.94e0

MQ
type: SiteQuality
SIO_000300: 5.776e1

GenotypeDepth
all individuals: 21
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8364
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1564
bin: 4.75e1
variant carriers: 0