5-68863509-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863509
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863509
    reference: chr 5
allele count: 1
allele frequency: 8.422613031466883e-6
allele num: 118728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+629T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-471T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-471T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-45T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57717A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-45T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5954
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

5-68863510-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863510
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863510
    reference: chr 5
allele count: 1
allele frequency: 8.422896802668375e-6
allele num: 118724
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+630T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-470T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-470T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57716A>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-44T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-44T>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

5-68863519-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863519
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863519
    reference: chr 5
allele count: 9
allele frequency: 7.615244026264131e-5
allele num: 118184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+639G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-461G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-461G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57707C>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-35G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-35G>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

5-68863521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863521
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863521
    reference: chr 5
allele count: 2
allele frequency: 1.69468546637744e-5
allele num: 118016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+641C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-459C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57705G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-33C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-459C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5936
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

5-68863523-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863523
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863523
    reference: chr 5
allele count: 1
allele frequency: 8.482915408367548e-6
allele num: 117884
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57703A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-457T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-457T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+643T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-31T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-31T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

5-68863523-TTATC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863523
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863519
    reference: chr 5
allele count: 14
allele frequency: 1.187608157171457e-4
allele num: 117884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-28_259-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-28_*66-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-28_*66-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-28_259-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-454_259-451delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-28_965-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-28_88-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-28_259-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57699_1311+57702delGATA
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+646_258+649delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-28_259-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-28_473-25delTCTA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-454_*66-451delTCTA
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 14949
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21003
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5704
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: TTATC
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

5-68863525-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863525
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863525
    reference: chr 5
allele count: 1
allele frequency: 8.490838385382172e-6
allele num: 117774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-455A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+645A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57701T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-455A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-29A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-29A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5923
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-68863533-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863533
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863533
    reference: chr 5
allele count: 2
allele frequency: 1.720637324064834e-5
allele num: 116236
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-447T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+653T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57693A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-447T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-21T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-21T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

5-68863536-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863536
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863536
    reference: chr 5
allele count: 1
allele frequency: 8.630063689870032e-6
allele num: 115874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-444C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-444C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+656C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57690G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-18C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-18C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-68863536-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863536
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863534
    reference: chr 5
allele count: 1
allele frequency: 8.630063689870032e-6
allele num: 115874
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-12_*66-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-12_259-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-12_473-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-12_965-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-12_259-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-438_259-437delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-12_259-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-12_88-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-12_*66-11delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+662_258+663delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-438_*66-437delTT
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57688_1311+57689delAA
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-12_259-11delTT
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: CTT
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

5-68863549-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863549
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863549
    reference: chr 5
allele count: 1
allele frequency: 9.091239681442962e-6
allele num: 109996
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57677T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.965-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*66-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.259-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.259-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.88-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.259-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-431A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+669A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*66-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.473-5A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-431A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.259-5A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.259-5A>G
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

5-68863596-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863596
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863596
    reference: chr 5
allele count: 308
allele frequency: 2.749509016247099e-2
allele num: 11202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.301A>G
  hgvsp: ENSP00000427224.1:p.Ile101Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.515A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-384A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.301A>G
  hgvsp: ENSP00000422907.1:p.Ile101Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+716A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*108A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.301A>G
  hgvsp: ENSP00000421312.1:p.Ile101Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57630T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.130A>G
  hgvsp: ENSP00000423952.2:p.Ile44Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.301A>G
  hgvsp: ENSP00000370105.3:p.Ile101Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-384A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*108A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1007A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 1.25e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15088
  bin: 7.5e0
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 33668
  bin: 2.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile101Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ

5-68863598-TAGTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863598
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863594
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 10902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.306_309delTCAG
  hgvsp: ENSP00000421312.1:p.Ser102ArgfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*113_*116delTCAG
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1012_1015delTCAG
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.306_309delTCAG
  hgvsp: ENSP00000427224.1:p.Ser102ArgfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.135_138delTCAG
  hgvsp: ENSP00000423952.2:p.Ser45ArgfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-379_259-376delTCAG
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.520_523delTCAG
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*113_*116delTCAG
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.306_309delTCAG
  hgvsp: ENSP00000422907.1:p.Ser102ArgfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+721_258+724delTCAG
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-379_*66-376delTCAG
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.306_309delTCAG
  hgvsp: ENSP00000370105.3:p.Ser102ArgfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57624_1311+57627delGACT
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 14568
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser102ArgfsTer4
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: TAGTC
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

5-68863609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863609
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863609
    reference: chr 5
allele count: 6
allele frequency: 6.075334143377885e-4
allele num: 9876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.138+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*116+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.309+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-371G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1015+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*116+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.523+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.309+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.309+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+729G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57617C>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.309+5G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-371G>A
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.309+5G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-68863624-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863624
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863624
    reference: chr 5
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.523+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+744A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57602T>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.309+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.138+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*116+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-356A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.309+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-356A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*116+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.309+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1015+20A>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.309+20A>C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-68863966-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68863966
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68863966
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 2314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*117-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.524-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.310-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.310-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.310-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57260C>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*117-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.310-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.259-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.139-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+1086G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*66-14G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1016-14G>A
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

5-68864019-TTGAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68864019
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68864015
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 8242
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57203_1311+57206delGTCA
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*160_*163delCTGA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*109_*112delCTGA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.353_356delCTGA
  hgvsp: ENSP00000422907.1:p.Thr118AsnfsTer10
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.567_570delCTGA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1059_1062delCTGA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.302_305delCTGA
  hgvsp: ENSP00000427456.1:p.Thr101AsnfsTer10
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.182_185delCTGA
  hgvsp: ENSP00000423952.2:p.Thr61AsnfsTer10
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+1143_258+1146delCTGA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.353_356delCTGA
  hgvsp: ENSP00000421312.1:p.Thr118AsnfsTer10
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.353_356delCTGA
  hgvsp: ENSP00000427224.1:p.Thr118AsnfsTer10
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.353_356delCTGA
  hgvsp: ENSP00000370105.3:p.Thr118AsnfsTer10
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*160_*163delCTGA
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22315
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr118AsnfsTer10
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: TTGAC
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-68864041-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68864041
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68864041
    reference: chr 5
allele count: 2
allele frequency: 1.943634596695821e-4
allele num: 10290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.364+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1070+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+1161A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.313+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.364+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*120+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.193+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*171+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.364+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*171+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.578+7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57185T>C
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.364+7A>G
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

5-68864057-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68864057
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68864057
    reference: chr 5
allele count: 17
allele frequency: 1.663730671364259e-3
allele num: 10218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.313+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*120+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.364+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+1177A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*171+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1070+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.578+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.364+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.364+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.193+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*171+23A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57169T>C
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31201
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 19248
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

5-68864058-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68864058
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68864058
    reference: chr 5
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.364+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*120+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*171+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.313+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1070+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.193+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.258+1178T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427486
  ensembl transcript: ENST00000511629
  gene symbol: GTF2H2C
  hgvsc: ENST00000511629.2:c.*171+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.364+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+57168A>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.364+24T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.578+24T>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18994
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31400
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

5-68868236-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868236
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868236
    reference: chr 5
allele count: 2
allele frequency: 5.509945451540029e-5
allele num: 36298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.365-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.259-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.365-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52990T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.314-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.194-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4202A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.579-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1071-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*172-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.365-36A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*121-36A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10436
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

5-68868249-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868249
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868248
    reference: chr 5
allele count: 1
allele frequency: 2.067055273058002e-5
allele num: 48378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*121-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4218delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.365-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.365-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.365-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.259-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*172-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52976delT
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.579-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.314-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1071-20delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.194-20delA
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: TA
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

5-68868255-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868255
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868255
    reference: chr 5
allele count: 1710
allele frequency: 3.476316324456191e-2
allele num: 49190
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1071-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.365-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*121-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*172-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.365-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52971G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4221C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.365-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.314-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.259-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.194-17C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.579-17C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 16096
  bin: 2.25e1
  variant carriers: 312
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 5786
  bin: 7.5e0
  variant carriers: 2957
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.75e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7270
  bin: 2.5e0
  variant carriers: 5947
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
num of homozygotes: 584
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

5-68868258-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868258
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868258
    reference: chr 5
allele count: 2
allele frequency: 3.160955873056012e-5
allele num: 63272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4224T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*172-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.365-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.259-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.365-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52968A>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1071-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.579-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.365-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.314-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*121-14T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.194-14T>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-68868262-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868262
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868262
    reference: chr 5
allele count: 17
allele frequency: 2.381419325918247e-4
allele num: 71386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.579-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.314-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.365-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4228T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.365-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52964A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.365-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*172-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1071-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.259-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*121-10T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.194-10T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2800
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21556
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 2
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

5-68868265-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868265
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868265
    reference: chr 5
allele count: 1
allele frequency: 1.170165461396241e-5
allele num: 85458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1071-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.579-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.365-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*172-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.259-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.365-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4231A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*121-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.365-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.314-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.194-7A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52961T>C
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29947
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.365-7A>G
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-68868266-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868266
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868266
    reference: chr 5
allele count: 3
allele frequency: 3.317409766454352e-5
allele num: 90432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.365-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.194-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.259-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.365-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.365-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.579-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52960A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*172-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*121-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1071-6T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4232T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.314-6T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.365-6T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/5-68868278-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868278
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868278
    reference: chr 5
allele count: 7
allele frequency: 5.945606197020402e-5
allele num: 117734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.585C>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.200C>A
  hgvsp: ENSP00000423952.2:p.Pro67Gln
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.320C>A
  hgvsp: ENSP00000427456.1:p.Pro107Gln
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.371C>A
  hgvsp: ENSP00000370105.3:p.Pro124Gln
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*127C>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*178C>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.371C>A
  hgvsp: ENSP00000422907.1:p.Pro124Gln
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4244C>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.265C>A
  hgvsp: ENSP00000427393.1:p.Gln89Lys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.371C>A
  hgvsp: ENSP00000427224.1:p.Pro124Gln
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1077C>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52948G>T
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro124Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

5-68868278-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868278
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868278
    reference: chr 5
allele count: 2
allele frequency: 1.698744627720115e-5
allele num: 117734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4244C>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52948G>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*178C>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.371C>G
  hgvsp: ENSP00000427224.1:p.Pro124Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.371C>G
  hgvsp: ENSP00000370105.3:p.Pro124Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.200C>G
  hgvsp: ENSP00000423952.2:p.Pro67Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.585C>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.265C>G
  hgvsp: ENSP00000427393.1:p.Gln89Glu
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.371C>G
  hgvsp: ENSP00000422907.1:p.Pro124Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*127C>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1077C>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.320C>G
  hgvsp: ENSP00000427456.1:p.Pro107Arg
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro124Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

5-68868290-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868290
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868290
    reference: chr 5
allele count: 1
allele frequency: 8.309512730173502e-6
allele num: 120344
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.383T>C
  hgvsp: ENSP00000422907.1:p.Ile128Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.383T>C
  hgvsp: ENSP00000370105.3:p.Ile128Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1089T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.277T>C
  hgvsp: ENSP00000427393.1:p.Ter93GlnextTer3
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.597T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*139T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.212T>C
  hgvsp: ENSP00000423952.2:p.Ile71Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4256T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.332T>C
  hgvsp: ENSP00000427456.1:p.Ile111Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*190T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.383T>C
  hgvsp: ENSP00000427224.1:p.Ile128Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52936A>G
  variant of: http://identifiers.org/hgnc/37301
canonical: false
consequence: stop lost
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter93GlnextTer3
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

5-68868292-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868292
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868292
    reference: chr 5
allele count: 2
allele frequency: 1.659833684664797e-5
allele num: 120494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.599A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.385A>T
  hgvsp: ENSP00000422907.1:p.Thr129Ser
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.214A>T
  hgvsp: ENSP00000423952.2:p.Thr72Ser
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*141A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.385A>T
  hgvsp: ENSP00000370105.3:p.Thr129Ser
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*192A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.279A>T
  hgvsp: ENSP00000427393.1:p.Ter93TyrextTer3
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1091A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.385A>T
  hgvsp: ENSP00000427224.1:p.Thr129Ser
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.334A>T
  hgvsp: ENSP00000427456.1:p.Thr112Ser
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4258A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52934T>A
  variant of: http://identifiers.org/hgnc/37301
canonical: false
consequence: stop lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ter93TyrextTer3
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

5-68868293-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868293
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868293
    reference: chr 5
allele count: 1
allele frequency: 8.296689620841284e-6
allele num: 120530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.386C>T
  hgvsp: ENSP00000427224.1:p.Thr129Met
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4259C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*142C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.215C>T
  hgvsp: ENSP00000423952.2:p.Thr72Met
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.386C>T
  hgvsp: ENSP00000422907.1:p.Thr129Met
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1092C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.600C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*193C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.335C>T
  hgvsp: ENSP00000427456.1:p.Thr112Met
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52933G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.386C>T
  hgvsp: ENSP00000370105.3:p.Thr129Met
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*1C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr129Met
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-68868294-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868294
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868294
    reference: chr 5
allele count: 5
allele frequency: 4.146624647536905e-5
allele num: 120580
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.387G>A
  hgvsp: ENST00000510979.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.387G>A
  hgvsp: ENST00000512736.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.601G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.216G>A
  hgvsp: ENST00000508344.2:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*2G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1093G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.387G>A
  hgvsp: ENST00000380729.3:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4260G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52932C>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*143G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.336G>A
  hgvsp: ENST00000507595.1:c.336G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*194G>A
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr129Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-68868299-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868299
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868299
    reference: chr 5
allele count: 5
allele frequency: 4.141472707694856e-5
allele num: 120730
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*199T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52927A>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*148T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.392T>G
  hgvsp: ENSP00000370105.3:p.Leu131Trp
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.392T>G
  hgvsp: ENSP00000427224.1:p.Leu131Trp
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.221T>G
  hgvsp: ENSP00000423952.2:p.Leu74Trp
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.392T>G
  hgvsp: ENSP00000422907.1:p.Leu131Trp
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*7T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.341T>G
  hgvsp: ENSP00000427456.1:p.Leu114Trp
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1098T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.606T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4265T>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu131Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

5-68868313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868313
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868313
    reference: chr 5
allele count: 3
allele frequency: 2.482580559739164e-5
allele num: 120842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.406G>A
  hgvsp: ENSP00000427224.1:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.355G>A
  hgvsp: ENSP00000427456.1:p.Asp119Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.406G>A
  hgvsp: ENSP00000422907.1:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4279G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.235G>A
  hgvsp: ENSP00000423952.2:p.Asp79Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1112G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*213G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*21G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.406G>A
  hgvsp: ENSP00000370105.3:p.Asp136Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*162G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.620G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52913C>T
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp136Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

5-68868314-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868314
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868314
    reference: chr 5
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.407A>T
  hgvsp: ENSP00000370105.3:p.Asp136Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.356A>T
  hgvsp: ENSP00000427456.1:p.Asp119Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.621A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*163A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.407A>T
  hgvsp: ENSP00000422907.1:p.Asp136Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.407A>T
  hgvsp: ENSP00000427224.1:p.Asp136Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1113A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*22A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4280A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*214A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.236A>T
  hgvsp: ENSP00000423952.2:p.Asp79Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52912T>A
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp136Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

5-68868316-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868316
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868316
    reference: chr 5
allele count: 4
allele frequency: 3.3101621979477e-5
allele num: 120840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.358A>G
  hgvsp: ENSP00000427456.1:p.Met120Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.409A>G
  hgvsp: ENSP00000427224.1:p.Met137Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52910T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.409A>G
  hgvsp: ENSP00000422907.1:p.Met137Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*216A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.623A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.238A>G
  hgvsp: ENSP00000423952.2:p.Met80Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*165A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.409A>G
  hgvsp: ENSP00000370105.3:p.Met137Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1115A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4282A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 46211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met137Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

5-68868318-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868318
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868317
    reference: chr 5
allele count: 26
allele frequency: 2.151534209393929e-4
allele num: 120844
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*27delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52907delT
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4285delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.241delA
  hgvsp: ENSP00000423952.2:p.Thr81ProfsTer12
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.412delA
  hgvsp: ENSP00000422907.1:p.Thr138ProfsTer12
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.412delA
  hgvsp: ENSP00000370105.3:p.Thr138ProfsTer12
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.412delA
  hgvsp: ENSP00000427224.1:p.Thr138ProfsTer12
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*219delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.361delA
  hgvsp: ENSP00000427456.1:p.Thr121ProfsTer12
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.626delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*168delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1118delA
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr138ProfsTer12
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: GA
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

5-68868324-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868324
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868324
    reference: chr 5
allele count: 2
allele frequency: 1.655300271469245e-5
allele num: 120824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.246C>T
  hgvsp: ENST00000508344.2:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.417C>T
  hgvsp: ENST00000510979.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.366C>T
  hgvsp: ENST00000507595.1:c.366C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.417C>T
  hgvsp: ENST00000512736.1:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1123C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*224C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*173C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52902G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.417C>T
  hgvsp: ENST00000380729.3:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.631C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4290C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Cys139Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

5-68868326-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868326
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868326
    reference: chr 5
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.248A>G
  hgvsp: ENSP00000423952.2:p.His83Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52900T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.419A>G
  hgvsp: ENSP00000370105.3:p.His140Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1125A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*34A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.368A>G
  hgvsp: ENSP00000427456.1:p.His123Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.419A>G
  hgvsp: ENSP00000422907.1:p.His140Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*226A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.419A>G
  hgvsp: ENSP00000427224.1:p.His140Arg
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4292A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*175A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.633A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His140Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

5-68868329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868329
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868329
    reference: chr 5
allele count: 1
allele frequency: 8.277049397430804e-6
allele num: 120816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.422G>A
  hgvsp: ENSP00000370105.3:p.Gly141Glu
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*229G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52897C>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.422G>A
  hgvsp: ENSP00000427224.1:p.Gly141Glu
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.251G>A
  hgvsp: ENSP00000423952.2:p.Gly84Glu
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*37G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.371G>A
  hgvsp: ENSP00000427456.1:p.Gly124Glu
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.636G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4295G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*178G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1128G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.422G>A
  hgvsp: ENSP00000422907.1:p.Gly141Glu
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly141Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP

5-68868338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868338
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868338
    reference: chr 5
allele count: 33
allele frequency: 2.734504474643686e-4
allele num: 120680
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.380C>T
  hgvsp: ENSP00000427456.1:p.Ser127Phe
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*238C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.431C>T
  hgvsp: ENSP00000427224.1:p.Ser144Phe
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.431C>T
  hgvsp: ENSP00000370105.3:p.Ser144Phe
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*46C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.260C>T
  hgvsp: ENSP00000423952.2:p.Ser87Phe
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4304C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.645C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.431C>T
  hgvsp: ENSP00000422907.1:p.Ser144Phe
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52888G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1137C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*187C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser144Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

5-68868341-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868341
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868341
    reference: chr 5
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*190T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52885A>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.648T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4307T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*241T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.434T>A
  hgvsp: ENSP00000370105.3:p.Leu145His
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1140T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.263T>A
  hgvsp: ENSP00000423952.2:p.Leu88His
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.383T>A
  hgvsp: ENSP00000427456.1:p.Leu128His
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.434T>A
  hgvsp: ENSP00000427224.1:p.Leu145His
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.434T>A
  hgvsp: ENSP00000422907.1:p.Leu145His
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*49T>A
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu145His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

5-68868342-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868342
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868344
    reference: chr 5
allele count: 1
allele frequency: 8.350033400133601e-6
allele num: 119760
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.384_385insAA
  hgvsp: ENSP00000427456.1:p.Tyr129AsnfsTer5
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.435_436insAA
  hgvsp: ENSP00000427224.1:p.Tyr146AsnfsTer5
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.435_436insAA
  hgvsp: ENSP00000422907.1:p.Tyr146AsnfsTer5
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1141_1142insAA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.649_650insAA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4308_364+4309insAA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52883_1311+52884insTT
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*50_*51insAA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.435_436insAA
  hgvsp: ENSP00000370105.3:p.Tyr146AsnfsTer5
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*191_*192insAA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.264_265insAA
  hgvsp: ENSP00000423952.2:p.Tyr89AsnfsTer5
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*242_*243insAA
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr146AsnfsTer5
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

5-68868343-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868343
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868343
    reference: chr 5
allele count: 1
allele frequency: 8.434832484226864e-6
allele num: 118556
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.436T>A
  hgvsp: ENSP00000422907.1:p.Tyr146Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*243T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.436T>A
  hgvsp: ENSP00000427224.1:p.Tyr146Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1142T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4309T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*192T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*51T>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52883A>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.436T>A
  hgvsp: ENSP00000370105.3:p.Tyr146Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.385T>A
  hgvsp: ENSP00000427456.1:p.Tyr129Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.265T>A
  hgvsp: ENSP00000423952.2:p.Tyr89Asn
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.650T>A
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr146Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

5-68868344-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868344
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868344
    reference: chr 5
allele count: 1
allele frequency: 8.43469019382918e-6
allele num: 118558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*244A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.437A>G
  hgvsp: ENSP00000370105.3:p.Tyr146Cys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.437A>G
  hgvsp: ENSP00000427224.1:p.Tyr146Cys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4310A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.266A>G
  hgvsp: ENSP00000423952.2:p.Tyr89Cys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1143A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52882T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.437A>G
  hgvsp: ENSP00000422907.1:p.Tyr146Cys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.386A>G
  hgvsp: ENSP00000427456.1:p.Tyr129Cys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.651A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*52A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*193A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44008
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr146Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-68868345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868345
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868345
    reference: chr 5
allele count: 256
allele frequency: 2.159572134770798e-3
allele num: 118542
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.387T>C
  hgvsp: ENST00000507595.1:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1144T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*53T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*245T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4311T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*194T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.438T>C
  hgvsp: ENST00000510979.1:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.438T>C
  hgvsp: ENST00000380729.3:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.267T>C
  hgvsp: ENST00000508344.2:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52881A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.652T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.438T>C
  hgvsp: ENST00000512736.1:c.438T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 43688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.Tyr146Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

5-68868354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868354
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868354
    reference: chr 5
allele count: 2
allele frequency: 1.697331794419173e-5
allele num: 117832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*203A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.447A>G
  hgvsp: ENST00000380729.3:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.396A>G
  hgvsp: ENST00000507595.1:c.396A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.447A>G
  hgvsp: ENST00000510979.1:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*62A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.447A>G
  hgvsp: ENST00000512736.1:c.447A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.661A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4320A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*254A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.276A>G
  hgvsp: ENST00000508344.2:c.276A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52872T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1153A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39973
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu149Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD

5-68868358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868358
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868358
    reference: chr 5
allele count: 1
allele frequency: 8.614451604010888e-6
allele num: 116084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*66A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.665A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.400A>G
  hgvsp: ENSP00000427456.1:p.Met134Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.451A>G
  hgvsp: ENSP00000422907.1:p.Met151Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*207A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.451A>G
  hgvsp: ENSP00000427224.1:p.Met151Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52868T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4324A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.280A>G
  hgvsp: ENSP00000423952.2:p.Met94Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*258A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.451A>G
  hgvsp: ENSP00000370105.3:p.Met151Val
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1157A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met151Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-68868360-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868360
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868360
    reference: chr 5
allele count: 3
allele frequency: 2.611011505857369e-5
allele num: 114898
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.402G>A
  hgvsp: ENSP00000427456.1:p.Met134Ile
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.282G>A
  hgvsp: ENSP00000423952.2:p.Met94Ile
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52866C>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.453G>A
  hgvsp: ENSP00000370105.3:p.Met151Ile
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.453G>A
  hgvsp: ENSP00000427224.1:p.Met151Ile
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.453G>A
  hgvsp: ENSP00000422907.1:p.Met151Ile
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1159G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*209G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.667G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*260G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*68G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4326G>A
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 36056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Met151Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

5-68868361-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868361
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868361
    reference: chr 5
allele count: 1
allele frequency: 8.7921363132814e-6
allele num: 113738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.403G>A
  hgvsp: ENSP00000427456.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.283G>A
  hgvsp: ENSP00000423952.2:p.Ala95Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.454G>A
  hgvsp: ENSP00000370105.3:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*261G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.454G>A
  hgvsp: ENSP00000422907.1:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1160G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*69G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*210G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4327G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.454G>A
  hgvsp: ENSP00000427224.1:p.Ala152Thr
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.668G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52865C>T
  variant of: http://identifiers.org/hgnc/37301
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala152Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

5-68868363-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868363
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868362
    reference: chr 5
allele count: 1
allele frequency: 9.1568383268625e-6
allele num: 109208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*213delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.457delA
  hgvsp: ENSP00000427224.1:p.Met153CysfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.286delA
  hgvsp: ENSP00000423952.2:p.Met96CysfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*264delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4330delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1163delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.457delA
  hgvsp: ENSP00000370105.3:p.Met153CysfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52862delT
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.406delA
  hgvsp: ENSP00000427456.1:p.Met136CysfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.457delA
  hgvsp: ENSP00000422907.1:p.Met153CysfsTer4
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*72delA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.671delA
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9742
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met153CysfsTer4
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: TA
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

5-68868372-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868372
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868372
    reference: chr 5
allele count: 1
allele frequency: 2.017674831524152e-5
allele num: 49562
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52854A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*80T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*272T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.679T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.465T>C
  hgvsp: ENST00000512736.1:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.465T>C
  hgvsp: ENST00000510979.1:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*221T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1171T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.414T>C
  hgvsp: ENST00000507595.1:c.414T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.465T>C
  hgvsp: ENST00000380729.3:c.465T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.294T>C
  hgvsp: ENST00000508344.2:c.294T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4338T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr155Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

5-68868373-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868373
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868373
    reference: chr 5
allele count: 4
allele frequency: 8.228759514503188e-5
allele num: 48610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.295C>T
  hgvsp: ENST00000508344.2:c.295C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.680C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000503604
  gene symbol: GTF2H2C
  hgvsc: ENST00000503604.1:n.1172C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.415C>T
  hgvsp: ENST00000507595.1:c.415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*222C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4339C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.466C>T
  hgvsp: ENST00000510979.1:c.466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.466C>T
  hgvsp: ENST00000512736.1:c.466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*273C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.466C>T
  hgvsp: ENST00000380729.3:c.466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52853G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*81C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu156Leu
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-68868383-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868383
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868383
    reference: chr 5
allele count: 1
allele frequency: 2.662832188315492e-5
allele num: 37554
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+6T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+6T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+6T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+6T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52843A>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+6T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+6T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4349T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.476T>G
  hgvsp: ENSP00000427224.1:p.Val159Gly
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+6T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+6T>G
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val159Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

5-68868389-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868389
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868389
    reference: chr 5
allele count: 2
allele frequency: 5.661552397667441e-5
allele num: 35326
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52837T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+12A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+12A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4355A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+12A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.482A>G
  hgvsp: ENSP00000427224.1:p.Tyr161Cys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+12A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+12A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+12A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+12A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+12A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9164
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr161Cys
num of homozygotes: 1
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

5-68868391-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868391
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868391
    reference: chr 5
allele count: 1
allele frequency: 3.22061191626409e-5
allele num: 31050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.484A>T
  hgvsp: ENSP00000427224.1:p.Ile162Phe
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+14A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+14A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+14A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+14A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4357A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+14A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+14A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+14A>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52835T>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+14A>T
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile162Phe
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

5-68868398-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868398
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868398
    reference: chr 5
allele count: 15
allele frequency: 5.295488244016098e-4
allele num: 28326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+21A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+21A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+21A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+21A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+21A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+21A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4364A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.491A>G
  hgvsp: ENSP00000427224.1:p.Tyr164Cys
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52828T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+21A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+21A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15266
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8322
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr164Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

5-68868401-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868401
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868401
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 25976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52825T>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4367A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+24A>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.494A>G
  hgvsp: ENSP00000427224.1:p.Asn165Ser
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+24A>G
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn165Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

5-68868432-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868432
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868432
    reference: chr 5
allele count: 1
allele frequency: 7.332453438920662e-5
allele num: 13638
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52794A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+55T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+55T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4398T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.*27T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+55T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+55T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+55T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+55T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+55T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+55T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30816
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11279
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

5-68868433-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868433
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868433
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 12914
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+56T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+56T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.*28T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52793A>G
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+56T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+56T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+56T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+56T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+56T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4399T>C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+56T>C
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4234
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-68868437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68868437
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68868437
    reference: chr 5
allele count: 4
allele frequency: 3.193357815743254e-4
allele num: 12526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+4403G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427224
  ensembl transcript: ENST00000512736
  gene symbol: GTF2H2C
  hgvsc: ENST00000512736.1:c.*32G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+52789C>T
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.684+60G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.470+60G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*85+60G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.419+60G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.470+60G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.299+60G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*277+60G>A
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  hgvsc: ENST00000514069.2:c.*226+60G>A
  variant of: http://identifiers.org/hgnc/31394
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30988
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11193
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-68873690-G-GGTTCTGCTTCTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68873690
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68873703
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 2078
alternate allele: GGTTCTGCTTCTGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000426434
  ensembl transcript: ENST00000514069
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

5-68875538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68875538
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68875538
    reference: chr 5
allele count: 2
allele frequency: 1.481481481481481e-3
allele num: 1350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.650-46C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+45688G>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+11504C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.650-46C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*457-46C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*265-46C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.479-46C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.599-46C>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.1082-46C>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

5-68875554-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68875554
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68875554
    reference: chr 5
allele count: 2
allele frequency: 2.733734281027884e-4
allele num: 7316
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+45672C>A
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.650-30G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.650-30G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.479-30G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*265-30G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+11520G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*457-30G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.599-30G>T
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.1082-30G>T
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

5-68875555-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68875555
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68875555
    reference: chr 5
allele count: 1
allele frequency: 1.352447930754666e-4
allele num: 7394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.599-29T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.650-29T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+11521T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*457-29T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.650-29T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+45671A>C
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.1082-29T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*265-29T>G
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.479-29T>G
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

5-68875556-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68875556
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68875557
    reference: chr 5
allele count: 2
allele frequency: 2.998500749625187e-4
allele num: 6670
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000421312
  ensembl transcript: ENST00000514162
  gene symbol: GTF2H2C
  hgvsc: ENST00000514162.1:c.364+11522_364+11523insA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427456
  ensembl transcript: ENST00000507595
  gene symbol: GTF2H2C
  hgvsc: ENST00000507595.1:c.599-28_599-27insA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000370105
  ensembl transcript: ENST00000380729
  gene symbol: GTF2H2C
  hgvsc: ENST00000380729.3:c.650-28_650-27insA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000422907
  ensembl transcript: ENST00000510979
  gene symbol: GTF2H2C
  hgvsc: ENST00000510979.1:c.650-28_650-27insA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000423952
  ensembl transcript: ENST00000508344
  gene symbol: GTF2H2C
  hgvsc: ENST00000508344.2:c.479-28_479-27insA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000427393
  ensembl transcript: ENST00000506129
  gene symbol: GTF2H2C
  hgvsc: ENST00000506129.1:c.*265-28_*265-27insA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253203
  ensembl transcript: ENST00000380759
  gene symbol: GUSBP3
  hgvsc: ENST00000380759.3:n.1311+45669_1311+45670insT
  variant of: http://identifiers.org/hgnc/37301
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl protein: ENSP00000403328
  ensembl transcript: ENST00000446221
  gene symbol: GTF2H2C
  hgvsc: ENST00000446221.2:c.*457-28_*457-27insA
  variant of: http://identifiers.org/hgnc/31394
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000183474
  ensembl transcript: ENST00000502619
  gene symbol: GTF2H2C
  hgvsc: ENST00000502619.1:n.1082-28_1082-27insA
  variant of: http://identifiers.org/hgnc/31394
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G

GenotypeDepth
all individuals: 604
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 313
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41279
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2301
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10182
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522209029743965e-5
allele num: 65694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16378
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

DP
type: SiteQuality
SIO_000300: 1.89483e6

FS
type: SiteQuality
SIO_000300: 3.855e0

MQ
type: SiteQuality
SIO_000300: 2.138e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.734e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.02e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e0

GenotypeDepth
all individuals: 22379
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10166
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41311
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1272
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.9e0

MQ
type: SiteQuality
SIO_000300: 2.119e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.47e0

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 1.89458e6

VQSLOD
type: SiteQuality
SIO_000300: -6.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.019e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 15151
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1585
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9904
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.516734093416697e-4
allele num: 16314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.117e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 7.206e0

DP
type: SiteQuality
SIO_000300: 1.868374e6

MQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.156e0

QD
type: SiteQuality
SIO_000300: 6.96e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.356e0

GenotypeDepth
all individuals: 3487
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1323
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15042
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9846
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65314
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.228350325512836e-4
allele num: 16282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.28e0

FS
type: SiteQuality
SIO_000300: 5.836e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
type: SiteQuality
SIO_000300: -8.396000000000001e0

MQ
type: SiteQuality
SIO_000300: 2.084e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.83e0

DP
type: SiteQuality
SIO_000300: 1.859515e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.55e-1

QD
type: SiteQuality
SIO_000300: 2.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

GenotypeDepth
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21003
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 602
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533130960046607e-5
allele num: 65226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.13e0

FS
type: SiteQuality
SIO_000300: 1.157e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

DP
type: SiteQuality
SIO_000300: 1.846376e6

VQSLOD
type: SiteQuality
SIO_000300: 8.73e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

MQ
type: SiteQuality
SIO_000300: 2.835e1

GenotypeDepth
all individuals: 2561
bin: 4.25e1
variant carriers: 3

GenotypeDepth
all individuals: 312
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5245
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9765
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38606
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9118
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.228652168571078e-4
allele num: 16278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.413760603204524e-3
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65226
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.157e0

VQSLOD
type: SiteQuality
SIO_000300: 8.73e-1

QD
type: SiteQuality
SIO_000300: 1.159e1

MQRankSum
type: SiteQuality
SIO_000300: 4.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.63e-1

MQ
type: SiteQuality
SIO_000300: 2.835e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

DP
type: SiteQuality
SIO_000300: 1.846376e6

GenotypeDepth
all individuals: 650
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5509
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 676
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5654
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180916391119509e-4
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e0

QD
type: SiteQuality
SIO_000300: 6.82e0

VQSLOD
type: SiteQuality
SIO_000300: -6.601e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.839461e6

MQ
type: SiteQuality
SIO_000300: 2.096e1

GenotypeDepth
all individuals: 5702
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 15165
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 655
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1541
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30562
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13885
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.107906514172053e-5
allele num: 64352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.63672e6

MQ
type: SiteQuality
SIO_000300: 2.014e1

QD
type: SiteQuality
SIO_000300: 4.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 1.521e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.834e0

GenotypeDepth
all individuals: 15268
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10862
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14019
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.199628022318661e-5
allele num: 16130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 5.6e0

MQ
type: SiteQuality
SIO_000300: 2.034e1

FS
type: SiteQuality
SIO_000300: 2.102e0

DP
type: SiteQuality
SIO_000300: 1.627612e6

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeDepth
all individuals: 191
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12645
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 404
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14019
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 724
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.034e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 5.6e0

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

FS
type: SiteQuality
SIO_000300: 2.102e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.627612e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeDepth
all individuals: 11835
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1254
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 279
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14356
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24928
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3134
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4879
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3864
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7956
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.644141922330736e-5
allele num: 60822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6236
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

FS
type: SiteQuality
SIO_000300: 1.018e1

DP
type: SiteQuality
SIO_000300: 1.351854e6

VQSLOD
type: SiteQuality
SIO_000300: -7.724e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-2

QD
type: SiteQuality
SIO_000300: 1.9e0

MQ
type: SiteQuality
SIO_000300: 2.025e1

GenotypeDepth
all individuals: 60
bin: 9.75e1
variant carriers: 18

GenotypeDepth
all individuals: 889
bin: 2.25e1
variant carriers: 18

GenotypeDepth
all individuals: 19
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 19
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 58
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 65
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 21

GenotypeQuality
all individuals: 2054
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 180
bin: 8.25e1
variant carriers: 90

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 809
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 32695
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 1120
bin: 1.75e1
variant carriers: 29

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 281
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 20

GenotypeQuality
all individuals: 13506
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 61

GenotypeQuality
all individuals: 610
bin: 9.75e1
variant carriers: 155

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 120
bin: 7.25e1
variant carriers: 27

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 125

GenotypeQuality
all individuals: 157
bin: 3.75e1
variant carriers: 76

GenotypeQuality
all individuals: 61
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1784
bin: 6.25e1
variant carriers: 50

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.968503937007874e-2
allele num: 508
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 5.535055350553505e-3
allele num: 542
num of homozygotes: 0

Latino
type: Population
allele count: 160
allele frequency: 2.373887240356083e-1
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 8.507853403141362e-3
allele num: 1528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 121
allele frequency: 1.706629055007052e-2
allele num: 7090
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 9.09090909090909e-3
allele num: 110
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.682e0

QD
type: SiteQuality
SIO_000300: 5.34e0

DP
type: SiteQuality
SIO_000300: 3.27062e5

MQ
type: SiteQuality
SIO_000300: 2.2e1

GenotypeDepth
all individuals: 2361
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33681
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14012
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.710000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 3.18619e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 5.33e0

MQ
type: SiteQuality
SIO_000300: 2.373e1

GenotypeDepth
all individuals: 169
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 12170
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 55
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1071
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 700
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34615
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 475
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 4.573170731707317e-3
allele num: 1312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.711e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.290000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.93731e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 6.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.666e0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7613
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34679
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.795977011494253e-4
allele num: 5568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 88
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.55484e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.492e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.67e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
SIO_000300: 4.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.09975e5

MQ
type: SiteQuality
SIO_000300: 3.415e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.511e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.619999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.93e0

GenotypeDepth
all individuals: 114
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27684
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20076
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.043e1

VQSLOD
type: SiteQuality
SIO_000300: 1.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 3.07153e5

MQ
type: SiteQuality
SIO_000300: 3.151e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeDepth
all individuals: 27925
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22939
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2475
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20883
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.73224043715847e-3
allele num: 732
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.34e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.32e-2

DP
type: SiteQuality
SIO_000300: 3.32867e5

VQSLOD
type: SiteQuality
SIO_000300: -3.715e0

MQ
type: SiteQuality
SIO_000300: 3.126e1

GenotypeDepth
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16735
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1349
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30242
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 380
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 136
bin: 8.25e1
variant carriers: 9

South Asian
type: Population
allele count: 1
allele frequency: 1.298701298701299e-3
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 2.127659574468085e-2
allele num: 752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.812e0

DP
type: SiteQuality
SIO_000300: 3.13886e5

MQ
type: SiteQuality
SIO_000300: 3.116e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.81e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 1.017e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30446
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590330788804071e-4
allele num: 6288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.952e0

QD
type: SiteQuality
SIO_000300: 6.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 3.198e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: -1.061e0

DP
type: SiteQuality
SIO_000300: 3.12224e5

GenotypeDepth
all individuals: 74
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7545
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9272
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.07469102632993e-4
allele num: 18610
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1714
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.07464e5

VQSLOD
type: SiteQuality
SIO_000300: -3.085e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.617e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

GenotypeDepth
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 780
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13430
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19648
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.713502398903359e-4
allele num: 5836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.23e-1

DP
type: SiteQuality
SIO_000300: 6.44966e5

VQSLOD
type: SiteQuality
SIO_000300: -4.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.635e0

QD
type: SiteQuality
SIO_000300: 2.753e1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

FS
type: SiteQuality
SIO_000300: 6.679e0

MQ
type: SiteQuality
SIO_000300: 4.851e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.95e-2

GenotypeDepth
all individuals: 245
bin: 5.25e1
variant carriers: 17

GenotypeDepth
all individuals: 4995
bin: 2.75e1
variant carriers: 189

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 64

GenotypeQuality
all individuals: 719
bin: 4.25e1
variant carriers: 129

GenotypeQuality
all individuals: 1131
bin: 2.75e1
variant carriers: 534

GenotypeQuality
all individuals: 2886
bin: 1.25e1
variant carriers: 2334

GenotypeQuality
all individuals: 4465
bin: 7.5e0
variant carriers: 3650

GenotypeQuality
all individuals: 635
bin: 5.75e1
variant carriers: 94

GenotypeQuality
all individuals: 3520
bin: 2.5e0
variant carriers: 123

GenotypeQuality
all individuals: 3493
bin: 2.25e1
variant carriers: 710

GenotypeQuality
all individuals: 706
bin: 9.75e1
variant carriers: 110

GenotypeQuality
all individuals: 2153
bin: 1.75e1
variant carriers: 1609

GenotypeQuality
all individuals: 1512
bin: 6.75e1
variant carriers: 95

GenotypeQuality
all individuals: 16492
bin: 6.25e1
variant carriers: 164

GenotypeQuality
all individuals: 274
bin: 7.25e1
variant carriers: 40

GenotypeQuality
all individuals: 263
bin: 7.75e1
variant carriers: 34

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 25

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 39

GenotypeQuality
all individuals: 815
bin: 3.75e1
variant carriers: 156

GenotypeQuality
all individuals: 690
bin: 4.75e1
variant carriers: 121

GenotypeQuality
all individuals: 640
bin: 5.25e1
variant carriers: 121

GenotypeQuality
all individuals: 980
bin: 3.25e1
variant carriers: 275

African
type: Population
allele count: 137
allele frequency: 2.25180802103879e-2
allele num: 6084
num of homozygotes: 39

Latino
type: Population
allele count: 93
allele frequency: 1.463184392699811e-2
allele num: 6356
num of homozygotes: 19

Other
type: Population
allele count: 19
allele frequency: 5.135135135135135e-2
allele num: 370
num of homozygotes: 8

East Asian
type: Population
allele count: 160
allele frequency: 5.759539236861051e-2
allele num: 2778
num of homozygotes: 51

European (Non-Finnish)
type: Population
allele count: 1172
allele frequency: 4.63460930085416e-2
allele num: 25288
num of homozygotes: 435

European (Finnish)
type: Population
allele count: 40
allele frequency: 1.518602885345482e-2
allele num: 2634
num of homozygotes: 4

South Asian
type: Population
allele count: 89
allele frequency: 1.566901408450704e-2
allele num: 5680
num of homozygotes: 28

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.059e-1

MQ
type: SiteQuality
SIO_000300: 2.2e1

FS
type: SiteQuality
SIO_000300: 1.1028e1

DP
type: SiteQuality
SIO_000300: 8.1911e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.221e0

VQSLOD
type: SiteQuality
SIO_000300: 1.6479e2

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17849
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11911
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23014
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10966
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3454
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.861230329041488e-4
allele num: 6990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.229e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.303e0

MQ
type: SiteQuality
SIO_000300: 4.217e1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 9.75e-1

DP
type: SiteQuality
SIO_000300: 9.15247e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

GenotypeDepth
all individuals: 22500
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1370
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3060
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 663
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 553
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 744
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 3910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

East Asian
type: Population
allele count: 17
allele frequency: 3.526970954356847e-3
allele num: 4820
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 2.215e0

QD
type: SiteQuality
SIO_000300: 2.36e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

VQSLOD
type: SiteQuality
SIO_000300: -3.449e0

DP
type: SiteQuality
SIO_000300: 1.03406e6

MQ
type: SiteQuality
SIO_000300: 4.154e1

GenotypeDepth
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 160
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34141
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15049
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4816
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.637197118533071e-4
allele num: 6108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46436
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.934e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.631e0

DP
type: SiteQuality
SIO_000300: 1.151238e6

VQSLOD
type: SiteQuality
SIO_000300: -2.679e0

QD
type: SiteQuality
SIO_000300: 7.49e0

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

GenotypeDepth
all individuals: 32546
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 711
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 749
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.426222019186844e-4
allele num: 8756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5136
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.648e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQ
type: SiteQuality
SIO_000300: 3.776e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.48e-1

QD
type: SiteQuality
SIO_000300: 5.79e0

DP
type: SiteQuality
SIO_000300: 1.188479e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.21e-1

FS
type: SiteQuality
SIO_000300: 1.5336e1

MQRankSum
type: SiteQuality
SIO_000300: -8.77e-1

GenotypeDepth
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 726
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.284763702763764e-5
allele num: 64622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.260956674179814e-5
allele num: 15972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.397527e6

FS
type: SiteQuality
SIO_000300: 1.854e0

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

QD
type: SiteQuality
SIO_000300: 1.004e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

MQ
type: SiteQuality
SIO_000300: 3.416e1

VQSLOD
type: SiteQuality
SIO_000300: -3.531e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.452e0

GenotypeDepth
all individuals: 262
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 63
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 19
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49029
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15972
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.043318348998774e-4
allele num: 9788
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

FS
type: SiteQuality
SIO_000300: 1.854e0

MQ
type: SiteQuality
SIO_000300: 3.416e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.531e0

DP
type: SiteQuality
SIO_000300: 1.397527e6

MQRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.452e0

QD
type: SiteQuality
SIO_000300: 1.004e1

GenotypeDepth
all individuals: 47
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50404
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.06e-1

FS
type: SiteQuality
SIO_000300: 4.755e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

VQSLOD
type: SiteQuality
SIO_000300: -5.409e0

QD
type: SiteQuality
SIO_000300: 1.353e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

DP
type: SiteQuality
SIO_000300: 1.418332e6

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

MQ
type: SiteQuality
SIO_000300: 3.248e1

GenotypeDepth
all individuals: 33
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66388
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.148e0

QD
type: SiteQuality
SIO_000300: 7.23e0

DP
type: SiteQuality
SIO_000300: 1.419699e6

FS
type: SiteQuality
SIO_000300: 5.584e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

MQ
type: SiteQuality
SIO_000300: 3.748e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.791e0

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeDepth
all individuals: 48
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 59
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 3.06e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

QD
type: SiteQuality
SIO_000300: 1.091e1

DP
type: SiteQuality
SIO_000300: 1.420113e6

FS
type: SiteQuality
SIO_000300: 1.323e0

VQSLOD
type: SiteQuality
SIO_000300: -4.431e0

MQRankSum
type: SiteQuality
SIO_000300: 8.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e-1

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50504
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009419482981733e-5
allele num: 66458
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006846556584777e-4
allele num: 9932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21300339640951e-4
allele num: 16488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.420955e6

VQSLOD
type: SiteQuality
SIO_000300: -4.772e0

QD
type: SiteQuality
SIO_000300: 6.56e0

MQ
type: SiteQuality
SIO_000300: 2.85e1

FS
type: SiteQuality
SIO_000300: 6.37e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.155e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeDepth
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.785697755149271e-4
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.63e-1

FS
type: SiteQuality
SIO_000300: 1.238e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.027e0

MQ
type: SiteQuality
SIO_000300: 3.171e1

VQSLOD
type: SiteQuality
SIO_000300: -3.899e0

DP
type: SiteQuality
SIO_000300: 1.422435e6

QD
type: SiteQuality
SIO_000300: 7.7e0

GenotypeDepth
all individuals: 14
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50614
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502341217433065e-5
allele num: 66632
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.987e0

FS
type: SiteQuality
SIO_000300: 1.884e0

VQSLOD
type: SiteQuality
SIO_000300: -6.099e0

QD
type: SiteQuality
SIO_000300: 5.74e0

MQ
type: SiteQuality
SIO_000300: 2.709e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.825e0

DP
type: SiteQuality
SIO_000300: 1.42368e6

MQRankSum
type: SiteQuality
SIO_000300: -2.155e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

GenotypeDepth
all individuals: 33
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 28
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

FS
type: SiteQuality
SIO_000300: 3.933e0

MQ
type: SiteQuality
SIO_000300: 3.192e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.105e0

DP
type: SiteQuality
SIO_000300: 1.423378e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.053e0

VQSLOD
type: SiteQuality
SIO_000300: -4.355e0

QD
type: SiteQuality
SIO_000300: 6.9e0

GenotypeDepth
all individuals: 7592
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50600
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9978
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.627487274409995e-4
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.423589e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.908e0

MQ
type: SiteQuality
SIO_000300: 3.531e1

FS
type: SiteQuality
SIO_000300: 1.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.34e-1

QD
type: SiteQuality
SIO_000300: 8.369999999999999e0

GenotypeDepth
all individuals: 18
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1375
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 261
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 50592
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.605210420841683e-3
allele num: 9980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.557e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

FS
type: SiteQuality
SIO_000300: 5.82e-1

QD
type: SiteQuality
SIO_000300: 9.44e0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.427724e6

GenotypeDepth
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3717
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6794
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002371873780286e-5
allele num: 66614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.422536e6

VQSLOD
type: SiteQuality
SIO_000300: -6.094e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 2.691e1

FS
type: SiteQuality
SIO_000300: 9.565e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.057e0

QD
type: SiteQuality
SIO_000300: 8.74e0

GenotypeDepth
all individuals: 1377
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6798
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50479
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002405773857257e-4
allele num: 9976
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.87e0

QD
type: SiteQuality
SIO_000300: 8.41e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQ
type: SiteQuality
SIO_000300: 3.835e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.352e0

DP
type: SiteQuality
SIO_000300: 1.422502e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

FS
type: SiteQuality
SIO_000300: 4.287e0

GenotypeDepth
all individuals: 28
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50429
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6787
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.199e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -4.229e0

QD
type: SiteQuality
SIO_000300: 7.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 3.261e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.883e0

DP
type: SiteQuality
SIO_000300: 1.4223e6

GenotypeDepth
all individuals: 748
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6707
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007861318282604e-4
allele num: 9922
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.208627686757854e-4
allele num: 66530
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.956e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 5.72e0

DP
type: SiteQuality
SIO_000300: 1.425632e6

FS
type: SiteQuality
SIO_000300: 1.193e0

MQ
type: SiteQuality
SIO_000300: 3.392e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.707e0

GenotypeDepth
all individuals: 44741
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1491
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49160
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511624391571182e-5
allele num: 66154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.592e0

DP
type: SiteQuality
SIO_000300: 1.42348e6

MQRankSum
type: SiteQuality
SIO_000300: 2.58e0

FS
type: SiteQuality
SIO_000300: 1.403e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 3.39e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.835e0

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -6.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.807e0

GenotypeDepth
all individuals: 40
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 812
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49011
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 280
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516714190377965e-5
allele num: 65932
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.944e0

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

MQ
type: SiteQuality
SIO_000300: 3.39e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.682e0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 1.403e0

DP
type: SiteQuality
SIO_000300: 1.423061e6

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.429e0

GenotypeDepth
all individuals: 32
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 736
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6547
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534495457893445e-5
allele num: 65168
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.374e1

QD
type: SiteQuality
SIO_000300: 8.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.009e0

MQRankSum
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.391429e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.974e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.58e-1

FS
type: SiteQuality
SIO_000300: 2.359e0

GenotypeDepth
all individuals: 29
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6546
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 727
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534495457893445e-5
allele num: 65168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.982e0

MQRankSum
type: SiteQuality
SIO_000300: 7.49e-1

DP
type: SiteQuality
SIO_000300: 1.391005e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 1.865e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 3.136e1

QD
type: SiteQuality
SIO_000300: 9.02e0

GenotypeDepth
all individuals: 45
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 47
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 26
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 9.75e1
variant carriers: 255

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 252
allele frequency: 2.179176755447942e-2
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.177700348432056e-4
allele num: 9184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.069367710251688e-5
allele num: 65160
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.620000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.547e0

QD
type: SiteQuality
SIO_000300: 6.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

DP
type: SiteQuality
SIO_000300: 1.41616e6

MQ
type: SiteQuality
SIO_000300: 3.513e1

GenotypeDepth
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.217730150998539e-4
allele num: 16424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.868e0

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

DP
type: SiteQuality
SIO_000300: 1.366205e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.336e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

MQ
type: SiteQuality
SIO_000300: 2.979e1

FS
type: SiteQuality
SIO_000300: 5.919e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 8.34e0

GenotypeDepth
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1091
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5075
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10049
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39178
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.181233774261343e-5
allele num: 16178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

MQ
type: SiteQuality
SIO_000300: 3.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.914e0

FS
type: SiteQuality
SIO_000300: 3.186e0

VQSLOD
type: SiteQuality
SIO_000300: -5.115e0

DP
type: SiteQuality
SIO_000300: 1.35585e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

QD
type: SiteQuality
SIO_000300: 1.482e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e0

GenotypeDepth
all individuals: 46
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 87
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 4895
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 900
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8826
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.359603586597452e-4
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.258605582676179e-5
allele num: 15978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.428e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQ
type: SiteQuality
SIO_000300: 3.379e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.336e0

DP
type: SiteQuality
SIO_000300: 1.345091e6

VQSLOD
type: SiteQuality
SIO_000300: -1.827e1

FS
type: SiteQuality
SIO_000300: 5.6532e1

MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

QD
type: SiteQuality
SIO_000300: 1.41e0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34245
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2033
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13780
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.145213009619789e-4
allele num: 8732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15794
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 3.801e1

QD
type: SiteQuality
SIO_000300: 9.42e0

DP
type: SiteQuality
SIO_000300: 1.340156e6

GenotypeDepth
all individuals: 47
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1976
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17951
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3866
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.669950903443439e-5
allele num: 59882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10970
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.01e-1

QD
type: SiteQuality
SIO_000300: 1.695e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.177e0

DP
type: SiteQuality
SIO_000300: 1.323092e6

FS
type: SiteQuality
SIO_000300: 3.909e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 3.56e-1

MQ
type: SiteQuality
SIO_000300: 3.753e1

GenotypeDepth
all individuals: 56
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 14863
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17556
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10141
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26730
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.939487975174554e-4
allele num: 5156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5932
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.092e0

DP
type: SiteQuality
SIO_000300: 6.7656e5

QD
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

FS
type: SiteQuality
SIO_000300: 8.617000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.248e0

MQ
type: SiteQuality
SIO_000300: 3.299e1

GenotypeDepth
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22008
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17725
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9830
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.168849069607167e-4
allele num: 5804
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 1.905487804878049e-4
allele num: 5248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2416
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.82e-1

DP
type: SiteQuality
SIO_000300: 6.62208e5

FS
type: SiteQuality
SIO_000300: 1.2433e1

VQSLOD
type: SiteQuality
SIO_000300: -5.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.52e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.596e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.77e-2

MQ
type: SiteQuality
SIO_000300: 3.032e1

QD
type: SiteQuality
SIO_000300: 7.53e0

GenotypeDepth
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20650
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20898
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6033
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.116850127011008e-4
allele num: 4724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3774
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.775e0

MQRankSum
type: SiteQuality
SIO_000300: -1.359e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.357e0

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

DP
type: SiteQuality
SIO_000300: 5.41692e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

MQ
type: SiteQuality
SIO_000300: 2.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

GenotypeQuality
all individuals: 1184
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 655
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1225
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20793
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22045
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.052077853761178e-4
allele num: 19010
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 5.17908e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.32e-2

QD
type: SiteQuality
SIO_000300: 2.37e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 2.832e1

VQSLOD
type: SiteQuality
SIO_000300: -6.66e0

GenotypeQuality
all individuals: 23238
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18917
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 2.460629921259842e-4
allele num: 4064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3198
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.31e0

MQ
type: SiteQuality
SIO_000300: 2.673e1

DP
type: SiteQuality
SIO_000300: 4.76081e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.868e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 24754
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18764
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3394
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1114
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.555657532450504e-5
allele num: 15254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 4.791238877481177e-3
allele num: 2922
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.3e0

DP
type: SiteQuality
SIO_000300: 4.4528e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.81e-1

MQ
type: SiteQuality
SIO_000300: 2.919e1

VQSLOD
type: SiteQuality
SIO_000300: -4.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

GenotypeQuality
all individuals: 17426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25462
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1299
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.65e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.018e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 4.22329e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

GenotypeQuality
all individuals: 8957
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 988
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3587
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27587
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.310272536687631e-4
allele num: 7632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.547e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 3.01307e5

MQ
type: SiteQuality
SIO_000300: 2.762e1

QD
type: SiteQuality
SIO_000300: 4.09e0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26915
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2946
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7930
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 828
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1706
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1382
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.93721e5

QD
type: SiteQuality
SIO_000300: 5.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.06e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.647e0

MQ
type: SiteQuality
SIO_000300: 2.173e1

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 443
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 858
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4510
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3113
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1780
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7667
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26779
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1312
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.959475566150178e-4
allele num: 1678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.240882103477523e-4
allele num: 7074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.719e0

MQ
type: SiteQuality
SIO_000300: 2.174e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 5.99e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.89499e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.57e-1

GenotypeQuality
all individuals: 72
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 17
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.3e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.8937e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-2

MQ
type: SiteQuality
SIO_000300: 2.9e1

VQSLOD
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
all individuals: 4243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.082251082251082e-3
allele num: 924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 76
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.351351351351351e-2
allele num: 74
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.418e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.31e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

QD
type: SiteQuality
SIO_000300: 1.059e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 2.306e1

DP
type: SiteQuality
SIO_000300: 3.9344e4

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1543
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 416
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.636363636363636e-3
allele num: 550
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

DP
type: SiteQuality
SIO_000300: 1.08928e5

MQ
type: SiteQuality
SIO_000300: 3.01e1

VQSLOD
type: SiteQuality
SIO_000300: -4.237e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.471e1

GenotypeQuality
all individuals: 2296
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 904
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.130379207498935e-4
allele num: 4694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.511e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

VQSLOD
type: SiteQuality
SIO_000300: -5.656e0

QD
type: SiteQuality
SIO_000300: 3.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 1.0964e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 67
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0