1-44067801-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44067801
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44067801
    reference: chr 1
allele count: 9
allele frequency: 7.419131467009595e-5
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2340+33A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-1286A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1036+33A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-1286A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-1286A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2340+33A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-1286A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.102+33A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-1286A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-1286A>G
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9266
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7930
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4849
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4643
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

1-44067809-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44067809
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44067809
    reference: chr 1
allele count: 1
allele frequency: 8.244702778464837e-6
allele num: 121290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.102+41A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2340+41A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-1278A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-1278A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2340+41A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-1278A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1036+41A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-1278A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-1278A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-1278A>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7923
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4629
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23735
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum

1-44067814-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44067814
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44067814
    reference: chr 1
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1036+46G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.102+46G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-1273G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-1273G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2340+46G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2340+46G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-1273G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-1273G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-1273G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-1273G>C
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3841
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

1-44067819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44067819
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44067819
    reference: chr 1
allele count: 2
allele frequency: 1.650900566258894e-5
allele num: 121146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-1268G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.102+51G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2340+51G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-1268G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-1268G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-1268G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-1268G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1036+51G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2340+51G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-1268G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5747
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5987
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-44069037-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069037
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069037
    reference: chr 1
allele count: 1
allele frequency: 8.275679433281473e-6
allele num: 120836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-50G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-50G>C
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14559
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-44069041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069041
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069041
    reference: chr 1
allele count: 1
allele frequency: 8.271709100534353e-6
allele num: 120894
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-46C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-46C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26411
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

1-44069047-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069047
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069047
    reference: chr 1
allele count: 3
allele frequency: 2.481594838282736e-5
allele num: 120890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-40G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-40G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

1-44069058-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069058
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069058
    reference: chr 1
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-29A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-29A>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27149
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

1-44069061-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069061
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069061
    reference: chr 1
allele count: 4
allele frequency: 3.305730483793656e-5
allele num: 121002
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-26G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-26G>C
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27252
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3576
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-44069066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069066
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069066
    reference: chr 1
allele count: 1
allele frequency: 8.260366760284156e-6
allele num: 121060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-21G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-21G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14690
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/1-44069070-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069070
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069070
    reference: chr 1
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-17C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-17C>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27558
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

1-44069072-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069072
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069072
    reference: chr 1
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-15C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-15C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11520
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

1-44069075-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069075
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069075
    reference: chr 1
allele count: 1
allele frequency: 8.255456856982466e-6
allele num: 121132
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-12C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-12C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

1-44069077-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069077
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069077
    reference: chr 1
allele count: 2
allele frequency: 1.650846058605035e-5
allele num: 121150
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-10C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-10C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

1-44069086-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069086
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069086
    reference: chr 1
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581-1G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341-1G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2341-1G>A
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-44069087-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069087
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069087
    reference: chr 1
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.103G>A
  hgvsp: ENSP00000361484.4:p.Glu35Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.841G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1284G>A
  hgvsp: ENSP00000408952.1:p.Glu429Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2341G>A
  hgvsp: ENSP00000361491.3:p.Glu781Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2341G>A
  hgvsp: ENSP00000353030.4:p.Glu781Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2314G>A
  hgvsp: ENSP00000361490.3:p.Glu772Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.581G>A
  hgvsp: ENSP00000416343.1:p.Glu195Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2314G>A
  hgvsp: ENSP00000398822.1:p.Glu772Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1037G>A
  hgvsp: ENSP00000391764.2:p.Glu347Lys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.385G>A
  hgvsp: ENSP00000387885.2:p.Glu129Lys
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27830
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu781Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

1-44069090-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069090
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069090
    reference: chr 1
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2344A>G
  hgvsp: ENSP00000361491.3:p.Thr782Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2317A>G
  hgvsp: ENSP00000361490.3:p.Thr773Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1040A>G
  hgvsp: ENSP00000391764.2:p.Thr348Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.388A>G
  hgvsp: ENSP00000387885.2:p.Thr130Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1287A>G
  hgvsp: ENSP00000408952.1:p.Thr430Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.844A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.584A>G
  hgvsp: ENSP00000416343.1:p.Thr196Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2344A>G
  hgvsp: ENSP00000353030.4:p.Thr782Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2317A>G
  hgvsp: ENSP00000398822.1:p.Thr773Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.106A>G
  hgvsp: ENSP00000361484.4:p.Thr36Ala
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27843
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14737
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr782Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

1-44069091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069091
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069091
    reference: chr 1
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.585C>T
  hgvsp: ENSP00000416343.1:p.Thr196Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2345C>T
  hgvsp: ENSP00000353030.4:p.Thr782Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2318C>T
  hgvsp: ENSP00000398822.1:p.Thr773Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2345C>T
  hgvsp: ENSP00000361491.3:p.Thr782Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2318C>T
  hgvsp: ENSP00000361490.3:p.Thr773Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1041C>T
  hgvsp: ENSP00000391764.2:p.Thr348Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1288C>T
  hgvsp: ENSP00000408952.1:p.Thr430Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.389C>T
  hgvsp: ENSP00000387885.2:p.Thr130Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.107C>T
  hgvsp: ENSP00000361484.4:p.Thr36Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.845C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr782Ile
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

1-44069094-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069094
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069094
    reference: chr 1
allele count: 1
allele frequency: 8.250280509537325e-6
allele num: 121208
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2348C>T
  hgvsp: ENSP00000361491.3:p.Thr783Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.848C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1291C>T
  hgvsp: ENSP00000408952.1:p.Thr431Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.110C>T
  hgvsp: ENSP00000361484.4:p.Thr37Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2321C>T
  hgvsp: ENSP00000398822.1:p.Thr774Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.392C>T
  hgvsp: ENSP00000387885.2:p.Thr131Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.588C>T
  hgvsp: ENSP00000416343.1:p.Thr197Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2348C>T
  hgvsp: ENSP00000353030.4:p.Thr783Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2321C>T
  hgvsp: ENSP00000361490.3:p.Thr774Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1044C>T
  hgvsp: ENSP00000391764.2:p.Thr349Ile
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14745
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3604
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr783Ile
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-44069099-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069099
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069099
    reference: chr 1
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1296A>G
  hgvsp: ENSP00000408952.1:p.Ser433Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.397A>G
  hgvsp: ENSP00000387885.2:p.Ser133Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.853A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2353A>G
  hgvsp: ENSP00000353030.4:p.Ser785Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2353A>G
  hgvsp: ENSP00000361491.3:p.Ser785Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2326A>G
  hgvsp: ENSP00000398822.1:p.Ser776Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.593A>G
  hgvsp: ENSP00000416343.1:p.Ser199Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1049A>G
  hgvsp: ENSP00000391764.2:p.Ser351Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2326A>G
  hgvsp: ENSP00000361490.3:p.Ser776Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.115A>G
  hgvsp: ENSP00000361484.4:p.Ser39Gly
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser785Gly
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-44069101-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069101
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069101
    reference: chr 1
allele count: 3
allele frequency: 2.474553343121567e-5
allele num: 121234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.399C>G
  hgvsp: ENSP00000387885.2:p.Ser133Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2355C>G
  hgvsp: ENSP00000353030.4:p.Ser785Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1051C>G
  hgvsp: ENSP00000391764.2:p.Ser351Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2355C>G
  hgvsp: ENSP00000361491.3:p.Ser785Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.595C>G
  hgvsp: ENSP00000416343.1:p.Ser199Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2328C>G
  hgvsp: ENSP00000361490.3:p.Ser776Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1298C>G
  hgvsp: ENSP00000408952.1:p.Ser433Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2328C>G
  hgvsp: ENSP00000398822.1:p.Ser776Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.855C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.117C>G
  hgvsp: ENSP00000361484.4:p.Ser39Arg
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser785Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-44069102-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069102
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069102
    reference: chr 1
allele count: 5
allele frequency: 4.124187535055594e-5
allele num: 121236
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2329G>A
  hgvsp: ENSP00000398822.1:p.Gly777Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.596G>A
  hgvsp: ENSP00000416343.1:p.Gly200Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.400G>A
  hgvsp: ENSP00000387885.2:p.Gly134Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1299G>A
  hgvsp: ENSP00000408952.1:p.Gly434Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2356G>A
  hgvsp: ENSP00000353030.4:p.Gly786Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.856G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.118G>A
  hgvsp: ENSP00000361484.4:p.Gly40Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1052G>A
  hgvsp: ENSP00000391764.2:p.Gly352Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2356G>A
  hgvsp: ENSP00000361491.3:p.Gly786Ser
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2329G>A
  hgvsp: ENSP00000361490.3:p.Gly777Ser
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly786Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

1-44069102-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069102
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069102
    reference: chr 1
allele count: 1
allele frequency: 8.248375070111188e-6
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2329G>T
  hgvsp: ENSP00000361490.3:p.Gly777Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.856G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.400G>T
  hgvsp: ENSP00000387885.2:p.Gly134Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.118G>T
  hgvsp: ENSP00000361484.4:p.Gly40Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2329G>T
  hgvsp: ENSP00000398822.1:p.Gly777Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.596G>T
  hgvsp: ENSP00000416343.1:p.Gly200Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2356G>T
  hgvsp: ENSP00000353030.4:p.Gly786Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1299G>T
  hgvsp: ENSP00000408952.1:p.Gly434Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2356G>T
  hgvsp: ENSP00000361491.3:p.Gly786Cys
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1052G>T
  hgvsp: ENSP00000391764.2:p.Gly352Cys
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10659
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly786Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

1-44069109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069109
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069109
    reference: chr 1
allele count: 16
allele frequency: 1.319565862831128e-4
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1059C>T
  hgvsp: ENSP00000391764.2:p.Thr354Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.407C>T
  hgvsp: ENSP00000387885.2:p.Thr136Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2336C>T
  hgvsp: ENSP00000398822.1:p.Thr779Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2363C>T
  hgvsp: ENSP00000361491.3:p.Thr788Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.863C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.125C>T
  hgvsp: ENSP00000361484.4:p.Thr42Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2363C>T
  hgvsp: ENSP00000353030.4:p.Thr788Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2336C>T
  hgvsp: ENSP00000361490.3:p.Thr779Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1306C>T
  hgvsp: ENSP00000408952.1:p.Thr436Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.603C>T
  hgvsp: ENSP00000416343.1:p.Thr202Ile
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr788Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

1-44069113-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069113
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069113
    reference: chr 1
allele count: 4
allele frequency: 3.299023489047242e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2340G>A
  hgvsp: ENST00000372413.3:c.2340G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1063G>A
  hgvsp: ENST00000412568.2:c.1063G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1310G>A
  hgvsp: ENST00000429895.1:c.1310G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2367G>A
  hgvsp: ENST00000359947.4:c.2367G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.867G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2340G>A
  hgvsp: ENST00000438120.1:c.2340G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2367G>A
  hgvsp: ENST00000372414.3:c.2367G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.411G>A
  hgvsp: ENST00000422171.2:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.129G>A
  hgvsp: ENST00000372407.4:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.607G>A
  hgvsp: ENST00000414879.1:c.607G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro789Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-44069116-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069116
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069116
    reference: chr 1
allele count: 1
allele frequency: 8.246742536698004e-6
allele num: 121260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2343G>C
  hgvsp: ENSP00000361490.3:p.Glu781Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.414G>C
  hgvsp: ENSP00000387885.2:p.Glu138Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1066G>C
  hgvsp: ENSP00000391764.2:p.Glu356Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2370G>C
  hgvsp: ENSP00000361491.3:p.Glu790Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2343G>C
  hgvsp: ENSP00000398822.1:p.Glu781Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.132G>C
  hgvsp: ENSP00000361484.4:p.Glu44Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2370G>C
  hgvsp: ENSP00000353030.4:p.Glu790Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.870G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.610G>C
  hgvsp: ENSP00000416343.1:p.Glu204Asp
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1313G>C
  hgvsp: ENSP00000408952.1:p.Glu438Asp
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu790Asp
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-44069119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069119
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069119
    reference: chr 1
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2373C>T
  hgvsp: ENST00000359947.4:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2373C>T
  hgvsp: ENST00000372414.3:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.613C>T
  hgvsp: ENST00000414879.1:c.613C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1069C>T
  hgvsp: ENST00000412568.2:c.1069C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2346C>T
  hgvsp: ENST00000438120.1:c.2346C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1316C>T
  hgvsp: ENST00000429895.1:c.1316C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.873C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.135C>T
  hgvsp: ENST00000372407.4:c.135C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2346C>T
  hgvsp: ENST00000372413.3:c.2346C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.417C>T
  hgvsp: ENST00000422171.2:c.417C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 10672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr791Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-44069128-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069128
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069128
    reference: chr 1
allele count: 23
allele frequency: 1.896625655572781e-4
allele num: 121268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.882C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.622C>T
  hgvsp: ENST00000414879.1:c.622C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.144C>T
  hgvsp: ENST00000372407.4:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1078C>T
  hgvsp: ENST00000412568.2:c.1078C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2382C>T
  hgvsp: ENST00000372414.3:c.2382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2355C>T
  hgvsp: ENST00000438120.1:c.2355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2355C>T
  hgvsp: ENST00000372413.3:c.2355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2382C>T
  hgvsp: ENST00000359947.4:c.2382C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.426C>T
  hgvsp: ENST00000422171.2:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1325C>T
  hgvsp: ENST00000429895.1:c.1325C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser794Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

1-44069129-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069129
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069129
    reference: chr 1
allele count: 2
allele frequency: 1.649158104787506e-5
allele num: 121274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1326G>A
  hgvsp: ENSP00000408952.1:p.Val443Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1079G>A
  hgvsp: ENSP00000391764.2:p.Val361Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.427G>A
  hgvsp: ENSP00000387885.2:p.Val143Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2356G>A
  hgvsp: ENSP00000361490.3:p.Val786Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2383G>A
  hgvsp: ENSP00000361491.3:p.Val795Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2383G>A
  hgvsp: ENSP00000353030.4:p.Val795Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2356G>A
  hgvsp: ENSP00000398822.1:p.Val786Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.145G>A
  hgvsp: ENSP00000361484.4:p.Val49Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.623G>A
  hgvsp: ENSP00000416343.1:p.Val209Ile
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.883G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val795Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

1-44069129-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069129
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069129
    reference: chr 1
allele count: 1
allele frequency: 8.245790523937529e-6
allele num: 121274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.623G>T
  hgvsp: ENSP00000416343.1:p.Val209Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2356G>T
  hgvsp: ENSP00000361490.3:p.Val786Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2383G>T
  hgvsp: ENSP00000361491.3:p.Val795Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1326G>T
  hgvsp: ENSP00000408952.1:p.Val443Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2356G>T
  hgvsp: ENSP00000398822.1:p.Val786Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.883G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.427G>T
  hgvsp: ENSP00000387885.2:p.Val143Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2383G>T
  hgvsp: ENSP00000353030.4:p.Val795Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.145G>T
  hgvsp: ENSP00000361484.4:p.Val49Phe
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1079G>T
  hgvsp: ENSP00000391764.2:p.Val361Phe
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val795Phe
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

1-44069150-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069150
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069150
    reference: chr 1
allele count: 6
allele frequency: 4.94600610007419e-5
allele num: 121310
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1100A>G
  hgvsp: ENSP00000391764.2:p.Thr368Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.448A>G
  hgvsp: ENSP00000387885.2:p.Thr150Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1347A>G
  hgvsp: ENSP00000408952.1:p.Thr450Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.904A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2404A>G
  hgvsp: ENSP00000361491.3:p.Thr802Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2377A>G
  hgvsp: ENSP00000398822.1:p.Thr793Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2404A>G
  hgvsp: ENSP00000353030.4:p.Thr802Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2377A>G
  hgvsp: ENSP00000361490.3:p.Thr793Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.166A>G
  hgvsp: ENSP00000361484.4:p.Thr56Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.644A>G
  hgvsp: ENSP00000416343.1:p.Thr216Ala
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10708
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr802Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

1-44069167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069167
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069167
    reference: chr 1
allele count: 1
allele frequency: 8.243887157672586e-6
allele num: 121302
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2421C>T
  hgvsp: ENST00000359947.4:c.2421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.921C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.661C>T
  hgvsp: ENST00000414879.1:c.661C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.465C>T
  hgvsp: ENST00000422171.2:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1364C>T
  hgvsp: ENST00000429895.1:c.1364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1117C>T
  hgvsp: ENST00000412568.2:c.1117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.183C>T
  hgvsp: ENST00000372407.4:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2394C>T
  hgvsp: ENST00000438120.1:c.2394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2421C>T
  hgvsp: ENST00000372414.3:c.2421C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2394C>T
  hgvsp: ENST00000372413.3:c.2394C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala807Ala
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

1-44069169-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069169
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069169
    reference: chr 1
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.185G>A
  hgvsp: ENSP00000361484.4:p.Arg62His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.467G>A
  hgvsp: ENSP00000387885.2:p.Arg156His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1119G>A
  hgvsp: ENSP00000391764.2:p.Arg374His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2396G>A
  hgvsp: ENSP00000398822.1:p.Arg799His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2423G>A
  hgvsp: ENSP00000361491.3:p.Arg808His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.663G>A
  hgvsp: ENSP00000416343.1:p.Arg222His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2423G>A
  hgvsp: ENSP00000353030.4:p.Arg808His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1366G>A
  hgvsp: ENSP00000408952.1:p.Arg456His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2396G>A
  hgvsp: ENSP00000361490.3:p.Arg799His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.923G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10674
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg808His
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

1-44069175-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069175
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069175
    reference: chr 1
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.669A>G
  hgvsp: ENSP00000416343.1:p.Lys224Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2402A>G
  hgvsp: ENSP00000398822.1:p.Lys801Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1372A>G
  hgvsp: ENSP00000408952.1:p.Lys458Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2429A>G
  hgvsp: ENSP00000361491.3:p.Lys810Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.473A>G
  hgvsp: ENSP00000387885.2:p.Lys158Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2402A>G
  hgvsp: ENSP00000361490.3:p.Lys801Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.929A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.191A>G
  hgvsp: ENSP00000361484.4:p.Lys64Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2429A>G
  hgvsp: ENSP00000353030.4:p.Lys810Arg
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1125A>G
  hgvsp: ENSP00000391764.2:p.Lys376Arg
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28049
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys810Arg
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-44069178-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069178
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069178
    reference: chr 1
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2405C>A
  hgvsp: ENSP00000361490.3:p.Pro802His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.194C>A
  hgvsp: ENSP00000361484.4:p.Pro65His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.932C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2405C>A
  hgvsp: ENSP00000398822.1:p.Pro802His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2432C>A
  hgvsp: ENSP00000353030.4:p.Pro811His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.476C>A
  hgvsp: ENSP00000387885.2:p.Pro159His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2432C>A
  hgvsp: ENSP00000361491.3:p.Pro811His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.672C>A
  hgvsp: ENSP00000416343.1:p.Pro225His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1128C>A
  hgvsp: ENSP00000391764.2:p.Pro377His
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1375C>A
  hgvsp: ENSP00000408952.1:p.Pro459His
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10663
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro811His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-44069184-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069184
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069184
    reference: chr 1
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2438T>C
  hgvsp: ENSP00000361491.3:p.Ile813Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.200T>C
  hgvsp: ENSP00000361484.4:p.Ile67Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1381T>C
  hgvsp: ENSP00000408952.1:p.Ile461Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2411T>C
  hgvsp: ENSP00000361490.3:p.Ile804Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.482T>C
  hgvsp: ENSP00000387885.2:p.Ile161Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2438T>C
  hgvsp: ENSP00000353030.4:p.Ile813Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1134T>C
  hgvsp: ENSP00000391764.2:p.Ile379Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.678T>C
  hgvsp: ENSP00000416343.1:p.Ile227Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2411T>C
  hgvsp: ENSP00000398822.1:p.Ile804Thr
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.938T>C
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3450
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile813Thr
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

1-44069185-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069185
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069185
    reference: chr 1
allele count: 3
allele frequency: 2.474349246148263e-5
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2412T>G
  hgvsp: ENSP00000398822.1:p.Ile804Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1382T>G
  hgvsp: ENSP00000408952.1:p.Ile461Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2439T>G
  hgvsp: ENSP00000361491.3:p.Ile813Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2412T>G
  hgvsp: ENSP00000361490.3:p.Ile804Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2439T>G
  hgvsp: ENSP00000353030.4:p.Ile813Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1135T>G
  hgvsp: ENSP00000391764.2:p.Ile379Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.679T>G
  hgvsp: ENSP00000416343.1:p.Ile227Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.939T>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.201T>G
  hgvsp: ENSP00000361484.4:p.Ile67Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.483T>G
  hgvsp: ENSP00000387885.2:p.Ile161Met
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile813Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

1-44069212-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069212
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069213
    reference: chr 1
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+12dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+18dupG
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+12dupG
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

1-44069216-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069216
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069216
    reference: chr 1
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+18G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+12G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-44069216-GTCAGGACGGACC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069216
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069204
    reference: chr 1
allele count: 15
allele frequency: 1.23944406802069e-4
allele num: 121022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27743
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10381
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3555
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35775
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: GTCAGGACGGACC
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

1-44069218-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069218
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069218
    reference: chr 1
allele count: 3
allele frequency: 2.480076717039781e-5
allele num: 120964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+20C>G
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11427
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35662
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/1-44069218-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069218
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069218
    reference: chr 1
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+20C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+14C>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+14C>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

1-44069219-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069219
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069219
    reference: chr 1
allele count: 1
allele frequency: 8.267195767195768e-6
allele num: 120960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+21A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+15A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+15A>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27710
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

1-44069223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069223
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069223
    reference: chr 1
allele count: 118
allele frequency: 9.758356626585733e-4
allele num: 120922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+19C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+25C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14665
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

1-44069224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069224
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069224
    reference: chr 1
allele count: 8
allele frequency: 6.616929413905477e-5
allele num: 120902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+26G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+20G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+20G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-44069237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069237
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069237
    reference: chr 1
allele count: 1
allele frequency: 8.276364358664525e-6
allele num: 120826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+39G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+33G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14625
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-44069239-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069239
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069239
    reference: chr 1
allele count: 2
allele frequency: 1.655601728448204e-5
allele num: 120802
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1395+41G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+35G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+35G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

1-44069243-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069243
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069243
    reference: chr 1
allele count: 1
allele frequency: 8.283219853221344e-6
allele num: 120726
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.502+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2458+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2458+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.698+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2431+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2431+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+39C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.958+39C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3490
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

1-44069247-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069247
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069247
    reference: chr 1
allele count: 1
allele frequency: 8.283906027370025e-6
allele num: 120716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+43A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-35A>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+43A>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14510
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10060
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35032
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-44069249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069249
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069249
    reference: chr 1
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+45G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+45G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-33G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-33G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14481
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

1-44069253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069253
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069253
    reference: chr 1
allele count: 1
allele frequency: 8.287613333112331e-6
allele num: 120662
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+49G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+49G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-29G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-29G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-29G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-29G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-29G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-29G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-29G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-29G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10083
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34864
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff

1-44069254-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069254
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069254
    reference: chr 1
allele count: 4
allele frequency: 3.317189676905725e-5
allele num: 120584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+50C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-28C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+50C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27246
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

1-44069255-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069255
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069255
    reference: chr 1
allele count: 1
allele frequency: 8.291048983517394e-6
allele num: 120612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+51G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-27G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+51G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-44069255-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069255
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069255
    reference: chr 1
allele count: 58
allele frequency: 4.808808410440089e-4
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-27G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+51G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-27G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-27G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-27G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+51G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-27G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-27G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-27G>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-27G>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14406
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27266
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-44069256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069256
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069256
    reference: chr 1
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+52C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-26C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-26C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-26C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+52C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-26C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-26C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-26C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-26C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-26C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10048
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

1-44069264-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069264
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069264
    reference: chr 1
allele count: 2
allele frequency: 1.659999004000598e-5
allele num: 120482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+60C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-18C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-18C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+60C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-18C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-18C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-18C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-18C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-18C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-18C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

1-44069268-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069268
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069268
    reference: chr 1
allele count: 1
allele frequency: 8.301786544464368e-6
allele num: 120456
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+64C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+64C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-14C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-14C>G
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10952
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

1-44069269-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069269
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069269
    reference: chr 1
allele count: 2
allele frequency: 1.661626399920242e-5
allele num: 120364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-13C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-13C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+65C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-13C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-13C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-13C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-13C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-13C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+65C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-13C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

1-44069270-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069270
    reference: chr 1
allele count: 177
allele frequency: 1.470099667774086e-3
allele num: 120400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+66G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+66G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-12G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-12G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26831
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14131
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-44069270-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069270
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069270
    reference: chr 1
allele count: 1
allele frequency: 8.305647840531562e-6
allele num: 120400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+66G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-12G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+66G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-12G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-12G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-12G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-12G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-12G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-12G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-12G>C
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3789
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

1-44069278-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069278
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069278
    reference: chr 1
allele count: 1
allele frequency: 8.3099270388406e-6
allele num: 120338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+74T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1396-4T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.959-4T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2432-4T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2459-4T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2432-4T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.503-4T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.699-4T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+74T>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2459-4T>C
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3757
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2459-4T>C
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-44069290-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069290
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069290
    reference: chr 1
allele count: 1
allele frequency: 8.323622440486099e-6
allele num: 120140
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.707C>G
  hgvsp: ENSP00000416343.1:p.Arg237Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.967C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.511C>G
  hgvsp: ENSP00000387885.2:p.Arg171Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2467C>G
  hgvsp: ENSP00000361491.3:p.Arg823Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2467C>G
  hgvsp: ENSP00000353030.4:p.Arg823Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+86C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+86C>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1404C>G
  hgvsp: ENSP00000408952.1:p.Arg469Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2440C>G
  hgvsp: ENSP00000361490.3:p.Arg814Gly
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2440C>G
  hgvsp: ENSP00000398822.1:p.Arg814Gly
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg823Gly
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

1-44069291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069291
    reference: chr 1
allele count: 7
allele frequency: 5.827796926253393e-5
allele num: 120114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1405G>A
  hgvsp: ENSP00000408952.1:p.Arg469Gln
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2441G>A
  hgvsp: ENSP00000398822.1:p.Arg814Gln
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.512G>A
  hgvsp: ENSP00000387885.2:p.Arg171Gln
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.708G>A
  hgvsp: ENSP00000416343.1:p.Arg237Gln
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.968G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2468G>A
  hgvsp: ENSP00000361491.3:p.Arg823Gln
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2441G>A
  hgvsp: ENSP00000361490.3:p.Arg814Gln
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+87G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+87G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2468G>A
  hgvsp: ENSP00000353030.4:p.Arg823Gln
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg823Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-44069291-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069291
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069291
    reference: chr 1
allele count: 1
allele frequency: 8.325424180361989e-6
allele num: 120114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.968G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.708G>C
  hgvsp: ENSP00000416343.1:p.Arg237Pro
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.512G>C
  hgvsp: ENSP00000387885.2:p.Arg171Pro
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2441G>C
  hgvsp: ENSP00000361490.3:p.Arg814Pro
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2468G>C
  hgvsp: ENSP00000361491.3:p.Arg823Pro
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+87G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+87G>C
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2468G>C
  hgvsp: ENSP00000353030.4:p.Arg823Pro
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1405G>C
  hgvsp: ENSP00000408952.1:p.Arg469Pro
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2441G>C
  hgvsp: ENSP00000398822.1:p.Arg814Pro
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1605
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg823Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-44069296-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069296
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069296
    reference: chr 1
allele count: 1
allele frequency: 8.322929671244279e-6
allele num: 120150
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.713A>G
  hgvsp: ENSP00000416343.1:p.Thr239Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2473A>G
  hgvsp: ENSP00000361491.3:p.Thr825Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.973A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+92A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2473A>G
  hgvsp: ENSP00000353030.4:p.Thr825Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2446A>G
  hgvsp: ENSP00000398822.1:p.Thr816Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2446A>G
  hgvsp: ENSP00000361490.3:p.Thr816Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.517A>G
  hgvsp: ENSP00000387885.2:p.Thr173Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1410A>G
  hgvsp: ENSP00000408952.1:p.Thr471Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+92A>G
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13125
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr825Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-44069311-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069311
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069311
    reference: chr 1
allele count: 1
allele frequency: 8.32639467110741e-6
allele num: 120100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2461A>G
  hgvsp: ENSP00000361490.3:p.Thr821Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+107A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.532A>G
  hgvsp: ENSP00000387885.2:p.Thr178Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1425A>G
  hgvsp: ENSP00000408952.1:p.Thr476Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2461A>G
  hgvsp: ENSP00000398822.1:p.Thr821Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2488A>G
  hgvsp: ENSP00000353030.4:p.Thr830Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.728A>G
  hgvsp: ENSP00000416343.1:p.Thr244Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2488A>G
  hgvsp: ENSP00000361491.3:p.Thr830Ala
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.988A>G
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+107A>G
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr830Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-44069313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069313
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069313
    reference: chr 1
allele count: 1
allele frequency: 8.328336331534413e-6
allele num: 120072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2463C>T
  hgvsp: ENST00000438120.1:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2490C>T
  hgvsp: ENST00000372414.3:c.2490C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+109C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+109C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.730C>T
  hgvsp: ENST00000414879.1:c.730C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.534C>T
  hgvsp: ENST00000422171.2:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.990C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2463C>T
  hgvsp: ENST00000372413.3:c.2463C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1427C>T
  hgvsp: ENST00000429895.1:c.1427C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2490C>T
  hgvsp: ENST00000359947.4:c.2490C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr830Thr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-44069315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069315
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069315
    reference: chr 1
allele count: 1
allele frequency: 8.327088017320342e-6
allele num: 120090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+111C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2465C>T
  hgvsp: ENSP00000398822.1:p.Thr822Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.732C>T
  hgvsp: ENSP00000416343.1:p.Thr245Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1429C>T
  hgvsp: ENSP00000408952.1:p.Thr477Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.536C>T
  hgvsp: ENSP00000387885.2:p.Thr179Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2492C>T
  hgvsp: ENSP00000361491.3:p.Thr831Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2465C>T
  hgvsp: ENSP00000361490.3:p.Thr822Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+111C>T
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2492C>T
  hgvsp: ENSP00000353030.4:p.Thr831Met
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.992C>T
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11618
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12781
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr831Met
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

1-44069316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 44069316
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 44069316
    reference: chr 1
allele count: 3
allele frequency: 2.49904203388701e-5
allele num: 120046
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000353030
  ensembl transcript: ENST00000359947
  gene symbol: PTPRF
  hgvsc: ENST00000359947.4:c.2493G>A
  hgvsp: ENST00000359947.4:c.2493G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000398822
  ensembl transcript: ENST00000438120
  gene symbol: PTPRF
  hgvsc: ENST00000438120.1:c.2466G>A
  hgvsp: ENST00000438120.1:c.2466G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000416343
  ensembl transcript: ENST00000414879
  gene symbol: PTPRF
  hgvsc: ENST00000414879.1:c.733G>A
  hgvsp: ENST00000414879.1:c.733G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361484
  ensembl transcript: ENST00000372407
  gene symbol: PTPRF
  hgvsc: ENST00000372407.4:c.220+112G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361490
  ensembl transcript: ENST00000372413
  gene symbol: PTPRF
  hgvsc: ENST00000372413.3:c.2466G>A
  hgvsp: ENST00000372413.3:c.2466G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000387885
  ensembl transcript: ENST00000422171
  gene symbol: PTPRF
  hgvsc: ENST00000422171.2:c.537G>A
  hgvsp: ENST00000422171.2:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000142949
  ensembl transcript: ENST00000496447
  gene symbol: PTPRF
  hgvsc: ENST00000496447.1:n.993G>A
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000361491
  ensembl transcript: ENST00000372414
  gene symbol: PTPRF
  hgvsc: ENST00000372414.3:c.2493G>A
  hgvsp: ENST00000372414.3:c.2493G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000408952
  ensembl transcript: ENST00000429895
  gene symbol: PTPRF
  hgvsc: ENST00000429895.1:c.1430G>A
  hgvsp: ENST00000429895.1:c.1430G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9670
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000142949
  ensembl protein: ENSP00000391764
  ensembl transcript: ENST00000412568
  gene symbol: PTPRF
  hgvsc: ENST00000412568.2:c.1154+112G>A
  variant of: http://identifiers.org/hgnc/9670
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12741
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25375
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr831Thr
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23747
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11049
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4114
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2514
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49748141041017e-5
allele num: 66704
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817961459217065e-4
allele num: 16502
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

DP
type: SiteQuality
SIO_000300: 2.51895e6

QD
type: SiteQuality
SIO_000300: 1.417e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.15e0

GenotypeQuality
all individuals: 296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5421
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4811
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 2.508498e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.455e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.973e0

GenotypeQuality
all individuals: 2743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5097
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8699
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23734
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.443e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.904e0

FS
type: SiteQuality
SIO_000300: 1.355e0

DP
type: SiteQuality
SIO_000300: 2.500525e6

GenotypeQuality
all individuals: 2149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23728
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2507
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001831116981359e-5
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.296e0

FS
type: SiteQuality
SIO_000300: 2.676e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 4.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.493741e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
all individuals: 3689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11208
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30989
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.222e1

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

DP
type: SiteQuality
SIO_000300: 1.729512e6

GenotypeQuality
all individuals: 547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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SIO_000300: -9.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.732215e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.518208379770475e-5
allele num: 66398
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.326000000000001e0

DP
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MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 3.57e-2

QD
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BaseQRankSum
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SIO_000300: -1.996e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele num: 16456
num of homozygotes: 0

InbreedingCoeff
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MQ
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 2.595155709342561e-4
allele num: 11560
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504528631179851e-5
allele num: 66466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.31e1

FS
type: SiteQuality
SIO_000300: 8.85e-1

DP
type: SiteQuality
SIO_000300: 1.749217e6

MQ
type: SiteQuality
SIO_000300: 5.985e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66508
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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South Asian
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East Asian
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allele num: 8636
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Other
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African
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ClippingRankSum
type: SiteQuality
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FS
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MQ
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

South Asian
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Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66526
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African
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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VQSLOD
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DP
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FS
type: SiteQuality
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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African
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South Asian
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European (Finnish)
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Latino
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MQ
type: SiteQuality
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QD
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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allele num: 16498
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Latino
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FS
type: SiteQuality
SIO_000300: 8.8e-1

InbreedingCoeff
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DP
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ClippingRankSum
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VQSLOD
type: SiteQuality
SIO_000300: 3.84e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

QD
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SIO_000300: 1.086e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -3.78e-1

VQSLOD
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FS
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -2.121e0

MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.277e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e-1

DP
type: SiteQuality
SIO_000300: 1.758344e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

ClippingRankSum
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ReadPosRankSum
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DP
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MQRankSum
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FS
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SIO_000300: 3.008e0

BaseQRankSum
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SIO_000300: -2.605e0

VQSLOD
type: SiteQuality
SIO_000300: -2.275e-1

QD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66602
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.635767970707265e-5
allele num: 10378
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.268e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 1.758572e6

BaseQRankSum
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SIO_000300: 2.4e0

FS
type: SiteQuality
SIO_000300: 1.0859e1

VQSLOD
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SIO_000300: -1.213e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.961e0

MQRankSum
type: SiteQuality
SIO_000300: 3.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -5.82e-1

FS
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SIO_000300: 9.15e-1

BaseQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.011e0

DP
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SIO_000300: 1.758652e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

DP
type: SiteQuality
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MQ
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ReadPosRankSum
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BaseQRankSum
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QD
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66614
num of homozygotes: 0

European (Finnish)
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DP
type: SiteQuality
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
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allele num: 66626
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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Latino
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num of homozygotes: 0

African
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MQRankSum
type: SiteQuality
SIO_000300: 8.85e-1

FS
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DP
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VQSLOD
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QD
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
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allele count: 4
allele frequency: 4.630701551285019e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500870504892838e-5
allele num: 66628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.325e0

ClippingRankSum
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SIO_000300: -7.2e-1

DP
type: SiteQuality
SIO_000300: 1.759535e6

VQSLOD
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.92e1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 1.73e0

ClippingRankSum
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DP
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MQ
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VQSLOD
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QD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.001290554938624e-5
allele num: 66638
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 13
allele frequency: 1.123595505617978e-3
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 7.527e0

ReadPosRankSum
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SIO_000300: 4.38e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
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SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 1.339e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.760137e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.889616644191871e-4
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
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VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

ReadPosRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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SIO_000300: -7.59e-1

BaseQRankSum
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SIO_000300: 1.27e0

QD
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SIO_000300: 1.221e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
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num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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FS
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
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SIO_000300: -7.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQ
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FS
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QD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.500555205426008e-5
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num of homozygotes: 0

African
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allele frequency: 1.925669170036588e-3
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Latino
type: Population
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allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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East Asian
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South Asian
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Other
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MQ
type: SiteQuality
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FS
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VQSLOD
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BaseQRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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European (Non-Finnish)
type: Population
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European (Finnish)
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African
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Latino
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South Asian
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East Asian
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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BaseQRankSum
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QD
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FS
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MQRankSum
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 4.812319538017325e-4
allele num: 10390
num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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SIO_000300: 3.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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SIO_000300: 3.31e-1

DP
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SIO_000300: 1.760761e6

QD
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SIO_000300: 1.988e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500285054160291e-5
allele num: 66654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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allele count: 0
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MQRankSum
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SIO_000300: 7.55e-1

ReadPosRankSum
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VQSLOD
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MQ
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.619084263178146e-5
allele num: 10396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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ReadPosRankSum
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FS
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VQSLOD
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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FS
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QD
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

African
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East Asian
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South Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.50105073551486e-5
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele count: 3
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allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: 5.4e-2

QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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SIO_000300: 5.926e1

FS
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SIO_000300: 3.062e0

DP
type: SiteQuality
SIO_000300: 1.759669e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

Latino
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allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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MQRankSum
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QD
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DP
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -3.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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DP
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11564
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Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
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African
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allele count: 14
allele frequency: 1.351090523065045e-3
allele num: 10362
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.88e-1

DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.333e1

FS
type: SiteQuality
SIO_000300: 7.867e0

QD
type: SiteQuality
SIO_000300: 3.69e0

BaseQRankSum
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SIO_000300: 2.11e0

MQRankSum
type: SiteQuality
SIO_000300: -4.949e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.515352197471403e-5
allele num: 66440
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10332
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.46e-1

BaseQRankSum
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FS
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SIO_000300: 1.7043e1

InbreedingCoeff
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66440
num of homozygotes: 0

South Asian
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allele num: 16502
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10332
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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Latino
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allele num: 11558
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South Asian
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African
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Other
type: Population
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allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 1
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allele num: 900
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South Asian
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European (Finnish)
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East Asian
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Latino
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allele frequency: 9.513924926483308e-4
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African
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European (Non-Finnish)
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allele frequency: 1.053931163238881e-4
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
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allele num: 900
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European (Finnish)
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African
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allele frequency: 6.779004454774356e-4
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Latino
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East Asian
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allele frequency: 1.160092807424594e-4
allele num: 8620
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South Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66400
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VQSLOD
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FS
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MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.748363e6

QD
type: SiteQuality
SIO_000300: 1.091e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.46e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3411
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1996
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11346
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.744575e6

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.768e0

FS
type: SiteQuality
SIO_000300: 2.914e0

QD
type: SiteQuality
SIO_000300: 1.777e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.254e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35319
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731301939058172e-4
allele num: 11552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 1.242e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.266e0

DP
type: SiteQuality
SIO_000300: 1.743217e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.77e-1

FS
type: SiteQuality
SIO_000300: 4.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e0

GenotypeQuality
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.069434328720563e-5
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.566e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

DP
type: SiteQuality
SIO_000300: 1.740825e6

MQRankSum
type: SiteQuality
SIO_000300: -9.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 8.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.343e0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1778
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
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variant carriers: 0

GenotypeQuality
all individuals: 11218
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
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GenotypeQuality
all individuals: 290
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
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GenotypeQuality
all individuals: 825
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.59e0

FS
type: SiteQuality
SIO_000300: 4.073e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.266e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-2

DP
type: SiteQuality
SIO_000300: 1.738313e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

GenotypeQuality
all individuals: 780
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 824
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.383e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.451e1

DP
type: SiteQuality
SIO_000300: 1.736786e6

FS
type: SiteQuality
SIO_000300: 7.195e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 823
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
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variant carriers: 1

GenotypeQuality
all individuals: 113
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variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.72e-1

DP
type: SiteQuality
SIO_000300: 1.734629e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.724e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.832e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.945e0

MQRankSum
type: SiteQuality
SIO_000300: -1.373e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.940240589833139e-4
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.523925632429137e-4
allele num: 6562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510026576467746e-5
allele num: 66224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.73416e6

MQRankSum
type: SiteQuality
SIO_000300: -1.32e-1

FS
type: SiteQuality
SIO_000300: 5.541e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

QD
type: SiteQuality
SIO_000300: 1.446e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
all individuals: 855
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 50
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 2010
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variant carriers: 1

GenotypeQuality
all individuals: 1744
bin: 8.25e1
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GenotypeQuality
all individuals: 16
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 384
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GenotypeQuality
all individuals: 702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11086
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509753004408479e-5
allele num: 66236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.423e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

FS
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

DP
type: SiteQuality
SIO_000300: 1.734595e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11086
bin: 6.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.75e1
variant carriers: 57

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3448
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 57
allele frequency: 5.529685681024447e-3
allele num: 10308
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

FS
type: SiteQuality
SIO_000300: 5.99e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

DP
type: SiteQuality
SIO_000300: 1.734595e6

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

GenotypeQuality
all individuals: 409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 703
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11081
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.731529e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.033e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.281e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-1

QD
type: SiteQuality
SIO_000300: 1.397e1

MQRankSum
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 1.752e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

GenotypeQuality
all individuals: 377
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34351
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3310
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1947
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.725742e6

FS
type: SiteQuality
SIO_000300: 6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 2.283e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.929e0

VQSLOD
type: SiteQuality
SIO_000300: -6.028e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1713
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
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GenotypeQuality
all individuals: 171
bin: 5.75e1
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GenotypeQuality
all individuals: 512
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 484
bin: 2.75e1
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GenotypeQuality
all individuals: 3294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 4.75e1
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GenotypeQuality
all individuals: 34410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511304558094547e-5
allele num: 66168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 7.492e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.722619e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.92e-1

QD
type: SiteQuality
SIO_000300: 1.498e1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 3270
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variant carriers: 0

GenotypeQuality
all individuals: 1704
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variant carriers: 0

GenotypeQuality
all individuals: 82
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GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 500
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 794
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GenotypeQuality
all individuals: 3396
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variant carriers: 0

GenotypeQuality
all individuals: 10891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51267622678042e-5
allele num: 66108
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.771e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.721638e6

QD
type: SiteQuality
SIO_000300: 1.404e1

FS
type: SiteQuality
SIO_000300: 1.1437e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

GenotypeQuality
all individuals: 305
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 9.75e1
variant carriers: 177

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 127
allele frequency: 1.920285472359985e-3
allele num: 66136
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.837711617046118e-4
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.60235947258848e-4
allele num: 11528
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 2.311435523114355e-3
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.064664419246092e-4
allele num: 6526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.489e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

FS
type: SiteQuality
SIO_000300: 1.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

DP
type: SiteQuality
SIO_000300: 1.722577e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1047
bin: 2.25e1
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 305
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 679
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GenotypeQuality
all individuals: 251
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GenotypeQuality
all individuals: 10870
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GenotypeQuality
all individuals: 1696
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GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 532
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GenotypeQuality
all individuals: 788
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variant carriers: 0

GenotypeQuality
all individuals: 34450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.72951936174353e-5
allele num: 10278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.451e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

FS
type: SiteQuality
SIO_000300: 1.262e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

DP
type: SiteQuality
SIO_000300: 1.722577e6

GenotypeQuality
all individuals: 373
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34147
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variant carriers: 0

GenotypeQuality
all individuals: 276
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GenotypeQuality
all individuals: 1175
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GenotypeQuality
all individuals: 10774
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GenotypeQuality
all individuals: 647
bin: 3.25e1
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GenotypeQuality
all individuals: 538
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GenotypeQuality
all individuals: 3229
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 666
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GenotypeQuality
all individuals: 1845
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GenotypeQuality
all individuals: 624
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GenotypeQuality
all individuals: 3322
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variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.710508e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.858e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.024e1

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.57e-1

GenotypeQuality
all individuals: 415
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1827
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.694752e6

VQSLOD
type: SiteQuality
SIO_000300: -5.5e-3

QD
type: SiteQuality
SIO_000300: 1.379e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.98e-1

FS
type: SiteQuality
SIO_000300: 7.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.093940404377217e-5
allele num: 65978
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 1.201e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

QD
type: SiteQuality
SIO_000300: 1.522e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.692429e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 755
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variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.782821365681862e-5
allele num: 10222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 1.201e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e-1

QD
type: SiteQuality
SIO_000300: 1.522e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.692429e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.159999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.425e0

QD
type: SiteQuality
SIO_000300: 1.08e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 3.436e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.689038e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.69e-1

GenotypeQuality
all individuals: 2958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514967882680887e-5
allele num: 66008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.542e1

FS
type: SiteQuality
SIO_000300: 2.006e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.678999e6

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
all individuals: 106
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 359
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515610791148833e-5
allele num: 65980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

FS
type: SiteQuality
SIO_000300: 5.058e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.895e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.678864e6

QD
type: SiteQuality
SIO_000300: 1.861e1

GenotypeQuality
all individuals: 861
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1789
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variant carriers: 1

GenotypeQuality
all individuals: 774
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515197430225158e-5
allele num: 65998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 1.378e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 1.678234e6

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2