2-58449214-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58449214
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58449214
    reference: chr 2
allele count: 5
allele frequency: 4.474112783435045e-5
allele num: 111754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.24-17853G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-37G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+19139G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.274-37G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.274-37G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.274-37G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.272-37G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.60-37G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.274-37G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.24-17853G>A
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12750
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS

2-58449216-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58449216
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58449216
    reference: chr 2
allele count: 5
allele frequency: 4.497130830530122e-5
allele num: 111182
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.274-39G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.24-17855G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.274-39G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.272-39G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.60-39G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-39G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.24-17855G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+19137G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.274-39G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.274-39G>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13849
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13659
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1769
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum

2-58449224-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58449224
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58449224
    reference: chr 2
allele count: 3
allele frequency: 2.734880668040185e-5
allele num: 109694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.274-47A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.274-47A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.272-47A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+19129A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-47A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.274-47A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.24-17863A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.60-47A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.274-47A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.24-17863A>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14515
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13779
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

2-58449225-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58449225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58449225
    reference: chr 2
allele count: 1
allele frequency: 9.155832265152902e-6
allele num: 109220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.274-48C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.274-48C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.274-48C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+19128C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.60-48C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.24-17864C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.274-48C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.24-17864C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.272-48C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-48C>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14487
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2742
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

2-58449225-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58449225
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58449226
    reference: chr 2
allele count: 1
allele frequency: 9.155832265152902e-6
allele num: 109220
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.274-49dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.24-17865dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-49dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.60-49dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.274-49dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.24-17865dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.272-49dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+19127dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.274-49dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.274-49dupT
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

2-58449229-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58449229
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58449229
    reference: chr 2
allele count: 1
allele frequency: 9.361718062498831e-6
allele num: 106818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.274-52A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.274-52A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+19124A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.24-17868A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.24-17868A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.274-52A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-52A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.272-52A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.274-52A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.60-52A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13599
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6346
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6655
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

2-58453820-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453820
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453820
    reference: chr 2
allele count: 1
allele frequency: 8.757334267448989e-6
allele num: 114190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+43G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14533G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+43G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4643G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+43G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14533G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+43G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+43G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14533G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+43G>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

2-58453823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453823
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453823
    reference: chr 2
allele count: 1
allele frequency: 8.750131251968779e-6
allele num: 114284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14530C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+40C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+40C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14530C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+40C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14530C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4646C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+40C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+40C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+40C>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7711
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9845
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

2-58453829-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453829
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453829
    reference: chr 2
allele count: 1
allele frequency: 8.728288382648164e-6
allele num: 114570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14524A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14524A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4652A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14524A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14621
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

2-58453830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453830
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453830
    reference: chr 2
allele count: 5
allele frequency: 4.369636271476762e-5
allele num: 114426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14523C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14523C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+33C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14523C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+33C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+33C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4653C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+33C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+33C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+33C>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9789
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13665
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

2-58453831-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453831
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453832
    reference: chr 2
allele count: 2
allele frequency: 1.743527155435446e-5
allele num: 114710
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14521dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+31dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+31dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14521dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+31dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+31dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+31dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+31dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4655dupA
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14521dupA
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9847
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-58453833-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453833
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453831
    reference: chr 2
allele count: 1
allele frequency: 8.721893697559614e-6
allele num: 114654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14518_23+14519delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+28_273+29delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+28_273+29delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14518_96+14519delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4658_97-4657delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+28_59+29delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+28_273+29delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+28_271+29delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14518_23+14519delGT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+28_273+29delGT
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13049
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14503
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2067
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: AAC
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-58453843-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453844
    reference: chr 2
allele count: 33269
allele frequency: 3.678896850672329e-1
allele num: 90432
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14509dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+19dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+19dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+19dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4667dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+19dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+19dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+19dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14509dupT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14509dupT
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.25e1
  variant carriers: 1783
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.75e1
  variant carriers: 2960
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 898
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 1378
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 4252
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 2.75e1
  variant carriers: 6408
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.75e1
  variant carriers: 593
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 697
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 733
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 4525
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 1573
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 1170
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 2.25e1
  variant carriers: 6466
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 790
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 643
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.25e1
  variant carriers: 556
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 448
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 541
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.25e1
  variant carriers: 524
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 576
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 645
num of homozygotes: 630
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

2-58453843-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453845
    reference: chr 2
allele count: 1253
allele frequency: 1.385571479122434e-2
allele num: 90432
alternate allele: GAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+18_271+19dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4668_97-4667dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+18_273+19dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14508_96+14509dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+18_273+19dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+18_273+19dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14508_23+14509dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14508_23+14509dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+18_273+19dupTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+18_59+19dupTT
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 2.75e1
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 2.25e1
  variant carriers: 341
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 2.75e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 74
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

2-58453843-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453842
    reference: chr 2
allele count: 8355
allele frequency: 9.238986199575372e-2
allele num: 90432
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14509delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+19delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4667delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+19delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+19delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14509delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+19delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14509delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+19delT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+19delT
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.75e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 1644
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.75e1
  variant carriers: 1149
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 2.75e1
  variant carriers: 2086
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 776
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.25e1
  variant carriers: 697
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 440
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 654
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.25e1
  variant carriers: 174
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 2.25e1
  variant carriers: 1647
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 324
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 651
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 4.25e1
  variant carriers: 564
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.75e1
  variant carriers: 238
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 269
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: GA
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

2-58453843-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453841
    reference: chr 2
allele count: 17
allele frequency: 1.879865534324133e-4
allele num: 90432
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+18_273+19delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+18_271+19delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4668_97-4667delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+18_59+19delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+18_273+19delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14508_96+14509delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+18_273+19delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14508_23+14509delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14508_23+14509delTT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+18_273+19delTT
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24916
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: GAA
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

2-58453843-GAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453843
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453840
    reference: chr 2
allele count: 5
allele frequency: 5.52901627742392e-5
allele num: 90432
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2183
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8008
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7944
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2337
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24916
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 3
  allele frequency: 6.054490413723511e-5
  allele num: 49550
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 7.416196974191635e-5
  allele num: 13484
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 5008
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6412
  num of homozygotes: 0
population: Latino
population: African
population: Other
reference allele: GAAA
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

2-58453856-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453856
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453856
    reference: chr 2
allele count: 18
allele frequency: 1.503106419934531e-4
allele num: 119752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+7A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14497A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4679A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+7A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+7A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+7A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+7A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14497A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14497A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+7A>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11103
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21630
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
hgvs: c.273+7A>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/2-58453861-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453861
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453861
    reference: chr 2
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+2T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+2T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+2T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+2T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+2T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14492T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14492T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4684T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+2T>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14492T>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11713
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 8.75e1
  variant carriers: 0
hgvs: c.273+2T>G
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

2-58453862-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453862
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453862
    reference: chr 2
allele count: 1
allele frequency: 8.289811821271656e-6
allele num: 120630
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.273+1G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14491G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14491G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.273+1G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.273+1G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.59+1G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.273+1G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4685G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.271+1G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14491G>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 3.25e1
  variant carriers: 0
hgvs: c.273+1G>C
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

2-58453879-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453879
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453879
    reference: chr 2
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.257A>T
  hgvsp: ENSP00000385021.3:p.Glu86Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.255A>T
  hgvsp: ENSP00000400969.2:p.Glu86Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.257A>T
  hgvsp: ENSP00000386097.3:p.Glu86Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14474A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.257A>T
  hgvsp: ENSP00000441431.1:p.Glu86Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4702A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.257A>T
  hgvsp: ENSP00000233741.4:p.Glu86Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14474A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.43A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14474A>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu86Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

2-58453886-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453886
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453886
    reference: chr 2
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.248A>T
  hgvsp: ENSP00000400969.2:p.Met84Leu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14467A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.250A>T
  hgvsp: ENSP00000386097.3:p.Met84Leu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4709A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.250A>T
  hgvsp: ENSP00000233741.4:p.Met84Leu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.250A>T
  hgvsp: ENSP00000441431.1:p.Met84Leu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.36A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.250A>T
  hgvsp: ENSP00000385021.3:p.Met84Leu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14467A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14467A>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met84Leu
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

2-58453886-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453886
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453886
    reference: chr 2
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14467A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4709A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.36A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14467A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.250A>G
  hgvsp: ENSP00000385021.3:p.Met84Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.250A>G
  hgvsp: ENSP00000441431.1:p.Met84Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.250A>G
  hgvsp: ENSP00000233741.4:p.Met84Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.250A>G
  hgvsp: ENSP00000386097.3:p.Met84Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14467A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.248A>G
  hgvsp: ENSP00000400969.2:p.Met84Val
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9689
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met84Val
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-58453890-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453890
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453890
    reference: chr 2
allele count: 6
allele frequency: 4.97124960644274e-5
allele num: 120694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14463C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.246C>G
  hgvsp: ENSP00000385021.3:p.Ser82Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.246C>G
  hgvsp: ENSP00000441431.1:p.Ser82Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4713C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.32C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.246C>G
  hgvsp: ENSP00000233741.4:p.Ser82Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14463C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.246C>G
  hgvsp: ENSP00000386097.3:p.Ser82Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.244C>G
  hgvsp: ENSP00000400969.2:p.Ser82Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14463C>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23128
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12577
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser82Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP

2-58453891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453891
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453891
    reference: chr 2
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.245G>A
  hgvsp: ENSP00000386097.3:p.Ser82Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.245G>A
  hgvsp: ENSP00000233741.4:p.Ser82Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14462G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.243G>A
  hgvsp: ENSP00000400969.2:p.Ser82Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4714G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14462G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.245G>A
  hgvsp: ENSP00000441431.1:p.Ser82Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.245G>A
  hgvsp: ENSP00000385021.3:p.Ser82Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14462G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.31G>A
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser82Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

2-58453896-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453896
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453896
    reference: chr 2
allele count: 2
allele frequency: 1.657824933687002e-5
allele num: 120640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.238A>C
  hgvsp: ENST00000427708.2:c.238A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14457A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.26A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.240A>C
  hgvsp: ENST00000233741.4:c.240A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.240A>C
  hgvsp: ENST00000540646.1:c.240A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.240A>C
  hgvsp: ENST00000402135.3:c.240A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.240A>C
  hgvsp: ENST00000403295.3:c.240A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4719A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14457A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14457A>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9692
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu80Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-58453897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453897
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453897
    reference: chr 2
allele count: 1
allele frequency: 8.292561572269675e-6
allele num: 120590
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14456T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.239T>C
  hgvsp: ENSP00000385021.3:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14456T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.239T>C
  hgvsp: ENSP00000233741.4:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.239T>C
  hgvsp: ENSP00000386097.3:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.237T>C
  hgvsp: ENSP00000400969.2:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.239T>C
  hgvsp: ENSP00000441431.1:p.Leu80Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14456T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4720T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.25T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu80Pro
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

2-58453898-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453898
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453898
    reference: chr 2
allele count: 19
allele frequency: 1.575586698731238e-4
allele num: 120590
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14455C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.236C>G
  hgvsp: ENSP00000400969.2:p.Leu80Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14455C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.24C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4721C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.238C>G
  hgvsp: ENSP00000233741.4:p.Leu80Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.238C>G
  hgvsp: ENSP00000385021.3:p.Leu80Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.238C>G
  hgvsp: ENSP00000441431.1:p.Leu80Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.238C>G
  hgvsp: ENSP00000386097.3:p.Leu80Val
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14455C>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 23201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12382
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu80Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

2-58453912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453912
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453912
    reference: chr 2
allele count: 1
allele frequency: 8.333611120370679e-6
allele num: 119996
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.222A>G
  hgvsp: ENSP00000400969.2:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.224A>G
  hgvsp: ENSP00000441431.1:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14441A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14441A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.10A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.224A>G
  hgvsp: ENSP00000385021.3:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.224A>G
  hgvsp: ENSP00000233741.4:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.224A>G
  hgvsp: ENSP00000386097.3:p.Gln75Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4735A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14441A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln75Arg
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-58453921-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453921
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453921
    reference: chr 2
allele count: 1
allele frequency: 8.411136344520145e-6
allele num: 118890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-2A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-2A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14432A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4744A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-2A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-2A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14432A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-2A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14432A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-2A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9441
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 3.25e1
  variant carriers: 0
hgvs: c.217-2A>G
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

2-58453930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453930
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453930
    reference: chr 2
allele count: 8416
allele frequency: 7.155854094039622e-2
allele num: 117610
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-11T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4753T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-11T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-11T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-11T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-11T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14423T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14423T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-11T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14423T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8533
  bin: 2.25e1
  variant carriers: 761
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 5.25e1
  variant carriers: 375
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 1.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 9.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 19897
  bin: 2.75e1
  variant carriers: 1077
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 769
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 4.75e1
  variant carriers: 542
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 4.25e1
  variant carriers: 794
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 7.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 3.25e1
  variant carriers: 1183
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 3.75e1
  variant carriers: 1004
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 367
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 8.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.75e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 6.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 28153
  bin: 6.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 2
num of homozygotes: 357
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

2-58453931-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453931
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453931
    reference: chr 2
allele count: 2
allele frequency: 1.713443679106268e-5
allele num: 116724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14422A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-12A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4754A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14422A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-12A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-12A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-12A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-12A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-12A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14422A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

2-58453938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453938
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453938
    reference: chr 2
allele count: 1
allele frequency: 8.635280301198577e-6
allele num: 115804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-19T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4761T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-19T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14415T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-19T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14415T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-19T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-19T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14415T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-19T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

2-58453941-TAATTTCATTTGCACAATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453941
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453923
    reference: chr 2
allele count: 1
allele frequency: 8.671372331385166e-6
allele num: 115322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 7790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16573
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7696
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: TAATTTCATTTGCACAATA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ

2-58453944-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453944
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453944
    reference: chr 2
allele count: 1
allele frequency: 8.69187309865276e-6
allele num: 115050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14409A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-25A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-25A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4767A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-25A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14409A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-25A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14409A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-25A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-25A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2825
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

2-58453954-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453954
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453954
    reference: chr 2
allele count: 2
allele frequency: 1.773584236383307e-5
allele num: 112766
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14399T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14399T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-35T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14399T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4777T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-35T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-35T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-35T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-35T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-35T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14092
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/2-58453955-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453955
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453955
    reference: chr 2
allele count: 7
allele frequency: 6.238303181534623e-5
allele num: 112210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14398G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14398G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-36G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-36G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14398G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-36G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-36G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-36G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4778G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-36G>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2776
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6785
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

2-58453955-CAATA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453955
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453951
    reference: chr 2
allele count: 1
allele frequency: 8.911861687906604e-6
allele num: 112210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-40_215-37delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-40_217-37delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-40_217-37delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14394_23+14397delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-40_217-37delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4782_97-4779delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14394_96+14397delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14394_23+14397delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-40_3-37delTATT
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-40_217-37delTATT
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: CAATA
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

2-58453958-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453958
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453958
    reference: chr 2
allele count: 10
allele frequency: 9.010470166333279e-5
allele num: 110982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-39A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-39A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14395A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14395A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-39A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-39A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-39A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-39A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14395A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4781A>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4118
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13910
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7687
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9981
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-58453963-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453963
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453963
    reference: chr 2
allele count: 40
allele frequency: 3.666025112272019e-4
allele num: 109110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14390T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14390T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-44T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-44T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-44T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4786T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-44T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14390T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-44T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-44T>A
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13619
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2572
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14738
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8483
  bin: 2.25e1
  variant carriers: 2
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

2-58453966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453966
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453966
    reference: chr 2
allele count: 762
allele frequency: 7.331716891813878e-3
allele num: 103932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-47G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-47G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14387G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14387G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-47G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-47G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4789G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-47G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14387G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-47G>A
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14502
  bin: 1.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 13217
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 8884
  bin: 2.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5530
  bin: 2.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 4.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 5.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 6572
  bin: 3.75e1
  variant carriers: 36
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

2-58453969-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58453969
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58453969
    reference: chr 2
allele count: 1
allele frequency: 9.095870474804439e-6
allele num: 109940
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.217-50A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.217-50A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+14384A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+14384A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.217-50A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.215-50A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-4792A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.3-50A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+14384A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.217-50A>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14264
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3079
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

2-58456909-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456909
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456909
    reference: chr 2
allele count: 1
allele frequency: 8.676789587852495e-6
allele num: 115250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11444A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+40A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+40A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7732A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+40A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+40A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11444A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+40A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11444A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+40A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8334
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

2-58456910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456910
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456910
    reference: chr 2
allele count: 1
allele frequency: 8.675133597057395e-6
allele num: 115272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+39T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+39T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7733T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+39T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11443T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+39T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+39T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+39T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11443T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11443T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3733
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

2-58456913-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456913
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456913
    reference: chr 2
allele count: 53
allele frequency: 4.587870708609616e-4
allele num: 115522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+36A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11440A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+36A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7736A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+36A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+36A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11440A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+36A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11440A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+36A>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6866
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3398
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23371
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/2-58456917-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456917
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456917
    reference: chr 2
allele count: 3
allele frequency: 2.587500646875162e-5
allele num: 115942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11436G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+32G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7740G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+32G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+32G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+32G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11436G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11436G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+32G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+32G>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9910
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

2-58456932-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456932
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456932
    reference: chr 2
allele count: 1
allele frequency: 8.437252155717926e-6
allele num: 118522
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+17A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11421A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+17A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+17A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7755A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+17A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+17A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+17A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11421A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11421A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

2-58456935-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456935
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456935
    reference: chr 2
allele count: 2
allele frequency: 1.682736803136621e-5
allele num: 118854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+14A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+14A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+14A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+14A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11418A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11418A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+14A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7758A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11418A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+14A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

2-58456940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456940
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456940
    reference: chr 2
allele count: 1
allele frequency: 8.368621018628551e-6
allele num: 119494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+9T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+9T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+9T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7763T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11413T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+9T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+9T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11413T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11413T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+9T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

2-58456941-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456941
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456941
    reference: chr 2
allele count: 1
allele frequency: 8.364141253617491e-6
allele num: 119558
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl transcript: ENST00000481670
  gene symbol: FANCL
  hgvsc: ENST00000481670.1:n.2+8C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.214+8C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11412C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.216+8C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.216+8C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11412C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.216+8C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.216+8C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7764C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11412C>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
hgvs: c.216+8C>G
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-58456952-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456952
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456952
    reference: chr 2
allele count: 1
allele frequency: 8.323483877411729e-6
allele num: 120142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.213A>G
  hgvsp: ENST00000403295.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7775A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.213A>G
  hgvsp: ENST00000402135.3:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.213A>G
  hgvsp: ENST00000233741.4:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.213A>G
  hgvsp: ENST00000540646.1:c.213A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11401A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.211A>G
  hgvsp: ENST00000427708.2:c.211A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11401A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11401A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39164
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5082
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln71Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

2-58456954-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456954
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456954
    reference: chr 2
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.211C>G
  hgvsp: ENSP00000441431.1:p.Gln71Glu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11399C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.211C>G
  hgvsp: ENSP00000385021.3:p.Gln71Glu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11399C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.209C>G
  hgvsp: ENSP00000400969.2:p.Gln71Glu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7777C>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.211C>G
  hgvsp: ENSP00000386097.3:p.Gln71Glu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.211C>G
  hgvsp: ENSP00000233741.4:p.Gln71Glu
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11399C>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8806
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln71Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

2-58456957-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456957
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456957
    reference: chr 2
allele count: 1
allele frequency: 8.315731701232391e-6
allele num: 120254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11396G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11396G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11396G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.208G>A
  hgvsp: ENSP00000441431.1:p.Val70Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.208G>A
  hgvsp: ENSP00000386097.3:p.Val70Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7780G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.208G>A
  hgvsp: ENSP00000233741.4:p.Val70Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.206G>A
  hgvsp: ENSP00000400969.2:p.Val70Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.208G>A
  hgvsp: ENSP00000385021.3:p.Val70Ile
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val70Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

2-58456962-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456962
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456962
    reference: chr 2
allele count: 55
allele frequency: 4.568941168652079e-4
allele num: 120378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11391G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11391G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.203G>C
  hgvsp: ENSP00000385021.3:p.Arg68Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.203G>C
  hgvsp: ENSP00000386097.3:p.Arg68Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11391G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.203G>C
  hgvsp: ENSP00000441431.1:p.Arg68Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.203G>C
  hgvsp: ENSP00000233741.4:p.Arg68Pro
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7785G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.201G>C
  hgvsp: ENSP00000400969.2:p.Arg68Pro
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12352
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 8845
  bin: 9.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg68Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

2-58456965-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456965
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456965
    reference: chr 2
allele count: 1
allele frequency: 8.302889405513118e-6
allele num: 120440
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7788A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.200A>G
  hgvsp: ENSP00000441431.1:p.His67Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.198A>G
  hgvsp: ENSP00000400969.2:p.His67Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11388A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.200A>G
  hgvsp: ENSP00000233741.4:p.His67Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.200A>G
  hgvsp: ENSP00000386097.3:p.His67Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11388A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.200A>G
  hgvsp: ENSP00000385021.3:p.His67Arg
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11388A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12465
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His67Arg
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-58456968-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456968
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456968
    reference: chr 2
allele count: 1
allele frequency: 8.297102651754007e-6
allele num: 120524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.197A>G
  hgvsp: ENSP00000233741.4:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11385A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.195A>G
  hgvsp: ENSP00000400969.2:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.197A>G
  hgvsp: ENSP00000386097.3:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7791A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.197A>G
  hgvsp: ENSP00000441431.1:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11385A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.197A>G
  hgvsp: ENSP00000385021.3:p.Tyr66Cys
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11385A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32189
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr66Cys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-58456975-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456975
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456975
    reference: chr 2
allele count: 2
allele frequency: 1.658567329540743e-5
allele num: 120586
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.190A>G
  hgvsp: ENSP00000385021.3:p.Ser64Gly
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11378A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11378A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.190A>G
  hgvsp: ENSP00000441431.1:p.Ser64Gly
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.190A>G
  hgvsp: ENSP00000233741.4:p.Ser64Gly
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.188A>G
  hgvsp: ENSP00000400969.2:p.Ser64Gly
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11378A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.190A>G
  hgvsp: ENSP00000386097.3:p.Ser64Gly
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7798A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5113
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser64Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-58456986-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456986
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456986
    reference: chr 2
allele count: 2
allele frequency: 1.659695943703114e-5
allele num: 120504
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.179G>T
  hgvsp: ENSP00000385021.3:p.Arg60Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11367G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.179G>T
  hgvsp: ENSP00000233741.4:p.Arg60Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.179G>T
  hgvsp: ENSP00000441431.1:p.Arg60Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.177G>T
  hgvsp: ENSP00000400969.2:p.Arg60Ile
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11367G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11367G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7809G>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.179G>T
  hgvsp: ENSP00000386097.3:p.Arg60Ile
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg60Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

2-58456993-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456993
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456993
    reference: chr 2
allele count: 1
allele frequency: 8.307579835842223e-6
allele num: 120372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11360C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.172C>T
  hgvsp: ENSP00000386097.3:p.Gln58Ter
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.170C>T
  hgvsp: ENSP00000400969.2:p.Gln58Ter
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.172C>T
  hgvsp: ENSP00000233741.4:p.Gln58Ter
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.172C>T
  hgvsp: ENSP00000385021.3:p.Gln58Ter
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7816C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11360C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.172C>T
  hgvsp: ENSP00000441431.1:p.Gln58Ter
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11360C>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln58Ter
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

2-58456998-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456998
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456998
    reference: chr 2
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.167G>C
  hgvsp: ENSP00000385021.3:p.Ser56Thr
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.167G>C
  hgvsp: ENSP00000233741.4:p.Ser56Thr
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.167G>C
  hgvsp: ENSP00000386097.3:p.Ser56Thr
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.167G>C
  hgvsp: ENSP00000441431.1:p.Ser56Thr
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11355G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7821G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11355G>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.165G>C
  hgvsp: ENSP00000400969.2:p.Ser56Thr
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11355G>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8804
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser56Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

2-58456998-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58456998
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58456998
    reference: chr 2
allele count: 1
allele frequency: 8.316976612661764e-6
allele num: 120236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11355G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.167G>A
  hgvsp: ENSP00000441431.1:p.Ser56Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7821G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.167G>A
  hgvsp: ENSP00000233741.4:p.Ser56Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11355G>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.165G>A
  hgvsp: ENSP00000400969.2:p.Ser56Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.167G>A
  hgvsp: ENSP00000385021.3:p.Ser56Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.167G>A
  hgvsp: ENSP00000386097.3:p.Ser56Asn
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11355G>A
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser56Asn
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP

2-58457002-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457002
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457002
    reference: chr 2
allele count: 1
allele frequency: 8.3301401129567e-6
allele num: 120046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11351T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7825T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.163T>A
  hgvsp: ENSP00000386097.3:p.Cys55Ser
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.163T>A
  hgvsp: ENSP00000385021.3:p.Cys55Ser
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11351T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.163T>A
  hgvsp: ENSP00000233741.4:p.Cys55Ser
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11351T>A
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.161T>A
  hgvsp: ENSP00000400969.2:p.Cys55Ser
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.163T>A
  hgvsp: ENSP00000441431.1:p.Cys55Ser
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys55Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

2-58457012-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457012
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457012
    reference: chr 2
allele count: 1
allele frequency: 8.360924383799873e-6
allele num: 119604
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.156-3T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.156-3T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11341T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11341T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.156-3T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.154-3T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.156-3T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7835T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11341T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37047
  bin: 6.25e1
  variant carriers: 0
hgvs: c.156-3T>C
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

2-58457018-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457018
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457018
    reference: chr 2
allele count: 1
allele frequency: 8.389543273264204e-6
allele num: 119196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.156-9A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11335A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7841A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11335A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11335A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.156-9A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.154-9A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.156-9A>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.156-9A>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8803
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2285
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD

2-58457021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457021
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457021
    reference: chr 2
allele count: 1
allele frequency: 8.418075291265404e-6
allele num: 118792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.154-12T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11332T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.156-12T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.156-12T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7844T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.156-12T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.156-12T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11332T>C
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11332T>C
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33044
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

2-58457022-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457022
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457022
    reference: chr 2
allele count: 2
allele frequency: 1.683700099338306e-5
allele num: 118786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.154-13A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.156-13A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11331A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.156-13A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7845A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.156-13A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.156-13A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11331A>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11331A>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26621
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

2-58457023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457023
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457023
    reference: chr 2
allele count: 4
allele frequency: 3.36870473303015e-5
allele num: 118740
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7846C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.156-14C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.156-14C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11330C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.156-14C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11330C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.156-14C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.154-14C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11330C>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12419
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33466
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

2-58457025-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457025
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457025
    reference: chr 2
allele count: 1
allele frequency: 8.427581789681268e-6
allele num: 118658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7848C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.156-16C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11328C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.156-16C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11328C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11328C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.156-16C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.156-16C>T
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.154-16C>T
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

2-58457043-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 58457043
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 58457043
    reference: chr 2
allele count: 0
allele frequency: 0.0e0
allele num: 117246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000390991
  ensembl transcript: ENST00000446381
  gene symbol: FANCL
  hgvsc: ENST00000446381.1:c.96+11310A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000401280
  ensembl transcript: ENST00000449070
  gene symbol: FANCL
  hgvsc: ENST00000449070.1:c.97-7866A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000386097
  ensembl transcript: ENST00000403295
  gene symbol: FANCL
  hgvsc: ENST00000403295.3:c.156-34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000400969
  ensembl transcript: ENST00000427708
  gene symbol: FANCL
  hgvsc: ENST00000427708.2:c.154-34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000441431
  ensembl transcript: ENST00000540646
  gene symbol: FANCL
  hgvsc: ENST00000540646.1:c.156-34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000385021
  ensembl transcript: ENST00000402135
  gene symbol: FANCL
  hgvsc: ENST00000402135.3:c.156-34A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000389448
  ensembl transcript: ENST00000417361
  gene symbol: FANCL
  hgvsc: ENST00000417361.1:c.23+11310A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000384046
  ensembl transcript: ENST00000403676
  gene symbol: FANCL
  hgvsc: ENST00000403676.1:c.23+11310A>G
  variant of: http://identifiers.org/hgnc/20748
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000115392
  ensembl protein: ENSP00000233741
  ensembl transcript: ENST00000233741
  gene symbol: FANCL
  hgvsc: ENST00000233741.4:c.156-34A>G
  variant of: http://identifiers.org/hgnc/20748
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10530
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum

GenotypeQuality
all individuals: 4397
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 671
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5044
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15835
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7742
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.06435137895812e-4
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.650328415354656e-5
allele num: 60594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.481721545242416e-5
allele num: 15428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10924
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.048e0

QD
type: SiteQuality
SIO_000300: 1.488e1

DP
type: SiteQuality
SIO_000300: 1.357614e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.02e0

FS
type: SiteQuality
SIO_000300: 3.084e0

GenotypeQuality
all individuals: 14195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4506
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7269
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 554
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5520
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6351
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 10687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.301786544464369e-5
allele num: 60228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15376
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

DP
type: SiteQuality
SIO_000300: 1.347611e6

QD
type: SiteQuality
SIO_000300: 1.528e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

GenotypeQuality
all individuals: 9513
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4631
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7718
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 962
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9723
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6350
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.064145847400405e-5
allele num: 59240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 3.267e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.332599e6

QD
type: SiteQuality
SIO_000300: 1.395e1

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.97e-1

GenotypeQuality
all individuals: 9559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6587
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6347
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7685
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15188
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.307520476545048e-5
allele num: 10744
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.332446e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.323e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

GenotypeQuality
all individuals: 653
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8933
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7685
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9559
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2742
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6587
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3939
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6347
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.584145377929945e-5
allele num: 15188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58924
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.47e-1

DP
type: SiteQuality
SIO_000300: 1.332446e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

QD
type: SiteQuality
SIO_000300: 1.323e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
all individuals: 1053
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1044
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7748
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4723
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4509
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5131
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.503896597605019e-5
allele num: 10522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.658e1

DP
type: SiteQuality
SIO_000300: 1.337184e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.291e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.606e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.113e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
all individuals: 15606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9845
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7062
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62036
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11030
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.310740880979428e-5
allele num: 15846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 2.41e1

DP
type: SiteQuality
SIO_000300: 1.732502e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

VQSLOD
type: SiteQuality
SIO_000300: -2.305e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 969
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16000
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3781
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4473
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7291
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609735681401114e-5
allele num: 62122
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 4.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.404e0

FS
type: SiteQuality
SIO_000300: 5.883e0

DP
type: SiteQuality
SIO_000300: 1.743694e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.861e0

GenotypeQuality
all individuals: 1147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3899
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9847
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3993
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1535
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1836
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.008674601573532e-4
allele num: 9914
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62278
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.099e0

MQRankSum
type: SiteQuality
SIO_000300: -1.209e0

FS
type: SiteQuality
SIO_000300: 4.771e0

QD
type: SiteQuality
SIO_000300: 2.017e1

DP
type: SiteQuality
SIO_000300: 1.773707e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

GenotypeQuality
all individuals: 694
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4003
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9853
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1583
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14526
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.072196620583717e-4
allele num: 6510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.824547296645331e-5
allele num: 62182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0568e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.513e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

QD
type: SiteQuality
SIO_000300: 1.315e1

VQSLOD
type: SiteQuality
SIO_000300: -9.330000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

DP
type: SiteQuality
SIO_000300: 1.779349e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4003
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4740
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14731
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.014910336490026e-4
allele num: 9926
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.784483e6

QD
type: SiteQuality
SIO_000300: 1.453e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.194e0

FS
type: SiteQuality
SIO_000300: 2.366e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.989e1

VQSLOD
type: SiteQuality
SIO_000300: 2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

GenotypeQuality
all individuals: 2905
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9848
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7619
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4803
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3923
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007861318282604e-4
allele num: 9922
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.241e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

QD
type: SiteQuality
SIO_000300: 1.623e1

DP
type: SiteQuality
SIO_000300: 1.797833e6

GenotypeQuality
all individuals: 2282
bin: 2.25e1
variant carriers: 899

GenotypeQuality
all individuals: 895
bin: 8.25e1
variant carriers: 539

GenotypeQuality
all individuals: 2337
bin: 1.25e1
variant carriers: 865

GenotypeQuality
all individuals: 2630
bin: 7.5e0
variant carriers: 937

GenotypeQuality
all individuals: 2119
bin: 2.75e1
variant carriers: 853

GenotypeQuality
all individuals: 1617
bin: 4.25e1
variant carriers: 734

GenotypeQuality
all individuals: 1367
bin: 5.25e1
variant carriers: 640

GenotypeQuality
all individuals: 2242
bin: 1.75e1
variant carriers: 960

GenotypeQuality
all individuals: 883
bin: 8.75e1
variant carriers: 584

GenotypeQuality
all individuals: 7944
bin: 2.5e0
variant carriers: 877

GenotypeQuality
all individuals: 1395
bin: 4.75e1
variant carriers: 667

GenotypeQuality
all individuals: 1968
bin: 3.25e1
variant carriers: 820

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 512

GenotypeQuality
all individuals: 1370
bin: 6.25e1
variant carriers: 649

GenotypeQuality
all individuals: 1710
bin: 3.75e1
variant carriers: 760

GenotypeQuality
all individuals: 24916
bin: 9.75e1
variant carriers: 22904

European (Non-Finnish)
type: Population
allele count: 18586
allele frequency: 3.750958627648839e-1
allele num: 49550
num of homozygotes: 366

European (Finnish)
type: Population
allele count: 1873
allele frequency: 3.740015974440895e-1
allele num: 5008
num of homozygotes: 63

East Asian
type: Population
allele count: 2252
allele frequency: 3.512164691203993e-1
allele num: 6412
num of homozygotes: 28

Latino
type: Population
allele count: 3739
allele frequency: 4.161843276936776e-1
allele num: 8984
num of homozygotes: 76

South Asian
type: Population
allele count: 5445
allele frequency: 4.038119252447345e-1
allele num: 13484
num of homozygotes: 90

African
type: Population
allele count: 1123
allele frequency: 1.782539682539682e-1
allele num: 6300
num of homozygotes: 5

Other
type: Population
allele count: 251
allele frequency: 3.61671469740634e-1
allele num: 694
num of homozygotes: 2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.542e-1

DP
type: SiteQuality
SIO_000300: 2.364576e6

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 6.28e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2282
bin: 2.25e1
variant carriers: 126

GenotypeQuality
all individuals: 7944
bin: 2.5e0
variant carriers: 111

GenotypeQuality
all individuals: 1395
bin: 4.75e1
variant carriers: 76

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 42

GenotypeQuality
all individuals: 1710
bin: 3.75e1
variant carriers: 94

GenotypeQuality
all individuals: 1367
bin: 5.25e1
variant carriers: 80

GenotypeQuality
all individuals: 2337
bin: 1.25e1
variant carriers: 124

GenotypeQuality
all individuals: 1042
bin: 6.75e1
variant carriers: 63

GenotypeQuality
all individuals: 895
bin: 8.25e1
variant carriers: 35

GenotypeQuality
all individuals: 2630
bin: 7.5e0
variant carriers: 152

GenotypeQuality
all individuals: 24916
bin: 9.75e1
variant carriers: 180

GenotypeQuality
all individuals: 883
bin: 8.75e1
variant carriers: 29

GenotypeQuality
all individuals: 1617
bin: 4.25e1
variant carriers: 88

GenotypeQuality
all individuals: 786
bin: 9.25e1
variant carriers: 24

GenotypeQuality
all individuals: 2242
bin: 1.75e1
variant carriers: 124

GenotypeQuality
all individuals: 1968
bin: 3.25e1
variant carriers: 119

European (Non-Finnish)
type: Population
allele count: 674
allele frequency: 1.360242179616549e-2
allele num: 49550
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.111111111111111e-3
allele num: 6300
num of homozygotes: 0

Latino
type: Population
allele count: 166
allele frequency: 1.847729296527159e-2
allele num: 8984
num of homozygotes: 0

South Asian
type: Population
allele count: 273
allele frequency: 2.024621773954316e-2
allele num: 13484
num of homozygotes: 0

Other
type: Population
allele count: 9
allele frequency: 1.296829971181556e-2
allele num: 694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 56
allele frequency: 1.118210862619808e-2
allele num: 5008
num of homozygotes: 0

East Asian
type: Population
allele count: 68
allele frequency: 1.060511540860886e-2
allele num: 6412
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 6.28e0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.542e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.364576e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1710
bin: 3.75e1
variant carriers: 546

GenotypeQuality
all individuals: 7944
bin: 2.5e0
variant carriers: 666

GenotypeQuality
all individuals: 1042
bin: 6.75e1
variant carriers: 309

GenotypeQuality
all individuals: 911
bin: 7.75e1
variant carriers: 280

GenotypeQuality
all individuals: 24916
bin: 9.75e1
variant carriers: 1777

GenotypeQuality
all individuals: 2337
bin: 1.25e1
variant carriers: 634

GenotypeQuality
all individuals: 2282
bin: 2.25e1
variant carriers: 685

GenotypeQuality
all individuals: 2630
bin: 7.5e0
variant carriers: 689

GenotypeQuality
all individuals: 2119
bin: 2.75e1
variant carriers: 714

GenotypeQuality
all individuals: 2242
bin: 1.75e1
variant carriers: 640

GenotypeQuality
all individuals: 786
bin: 9.25e1
variant carriers: 206

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 297

GenotypeQuality
all individuals: 1370
bin: 6.25e1
variant carriers: 356

GenotypeQuality
all individuals: 1367
bin: 5.25e1
variant carriers: 500

GenotypeQuality
all individuals: 1395
bin: 4.75e1
variant carriers: 476

GenotypeQuality
all individuals: 1316
bin: 5.75e1
variant carriers: 495

Other
type: Population
allele count: 64
allele frequency: 9.221902017291066e-2
allele num: 694
num of homozygotes: 0

East Asian
type: Population
allele count: 697
allele frequency: 1.087024329382408e-1
allele num: 6412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4419
allele frequency: 8.918264379414732e-2
allele num: 49550
num of homozygotes: 0

Latino
type: Population
allele count: 586
allele frequency: 6.522707034728406e-2
allele num: 8984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 325
allele frequency: 6.489616613418531e-2
allele num: 5008
num of homozygotes: 0

African
type: Population
allele count: 1172
allele frequency: 1.86031746031746e-1
allele num: 6300
num of homozygotes: 0

South Asian
type: Population
allele count: 1092
allele frequency: 8.098487095817265e-2
allele num: 13484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 6.28e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

DP
type: SiteQuality
SIO_000300: 2.364576e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.542e-1

GenotypeQuality
all individuals: 883
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1042
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7944
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2630
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 1316
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2119
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1370
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 895
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 939
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2282
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 2.018163471241171e-4
allele num: 49550
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.452359750667854e-4
allele num: 8984
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.587301587301587e-4
allele num: 6300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.559575795383656e-4
allele num: 6412
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.416196974191635e-5
allele num: 13484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.542e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 6.28e0

DP
type: SiteQuality
SIO_000300: 2.364576e6

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.440922190201729e-3
allele num: 694
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.542e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.71e-1

DP
type: SiteQuality
SIO_000300: 2.364576e6

QD
type: SiteQuality
SIO_000300: 6.28e0

GenotypeQuality
all individuals: 812
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8998
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 788
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.585708636266845e-4
allele num: 65746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.534212948757288e-4
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

FS
type: SiteQuality
SIO_000300: 1.179e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.06e-1

DP
type: SiteQuality
SIO_000300: 2.225055e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8920
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 390
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.838e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.741e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e0

MQRankSum
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 2.21006e6

QD
type: SiteQuality
SIO_000300: 2.199e1

GenotypeQuality
all individuals: 2047
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35069
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8923
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66278
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

QD
type: SiteQuality
SIO_000300: 1.007e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

DP
type: SiteQuality
SIO_000300: 2.211145e6

GenotypeQuality
all individuals: 1895
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8894
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.637e-1

FS
type: SiteQuality
SIO_000300: 6.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 2.219167e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

QD
type: SiteQuality
SIO_000300: 7.52e0

GenotypeQuality
all individuals: 605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8890
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6823
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

FS
type: SiteQuality
SIO_000300: 4.9e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

DP
type: SiteQuality
SIO_000300: 2.219173e6

GenotypeQuality
all individuals: 1878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8890
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6823
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: 4.96e-1

DP
type: SiteQuality
SIO_000300: 2.219173e6

FS
type: SiteQuality
SIO_000300: 4.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.69e-1

QD
type: SiteQuality
SIO_000300: 1.449e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeQuality
all individuals: 1873
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8894
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 5.822981366459627e-4
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 1.756e0

QD
type: SiteQuality
SIO_000300: 1.066e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.078e0

DP
type: SiteQuality
SIO_000300: 2.219582e6

GenotypeQuality
all individuals: 8888
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36849
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507658907248824e-5
allele num: 66328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.219312e6

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.346e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.528e0

MQ
type: SiteQuality
SIO_000300: 6.025e1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.413e1

GenotypeQuality
all individuals: 88
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6805
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8889
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 36889
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016773259321829e-5
allele num: 66296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.219031e6

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.77e-1

QD
type: SiteQuality
SIO_000300: 1.425e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.036e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.85e0

GenotypeQuality
all individuals: 1851
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6793
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8888
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36697
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509115054931788e-5
allele num: 66264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.218175e6

VQSLOD
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.026e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

QD
type: SiteQuality
SIO_000300: 1.518e1

GenotypeQuality
all individuals: 711
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6779
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8896
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.054690329590728e-5
allele num: 66264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.310832216400634e-4
allele num: 16414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.23e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.813e-1

DP
type: SiteQuality
SIO_000300: 2.218724e6

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.59e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

GenotypeQuality
all individuals: 6643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36055
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

DP
type: SiteQuality
SIO_000300: 2.207099e6

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.66e0

GenotypeQuality
all individuals: 2657
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8877
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1310
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.798169980644026e-5
allele num: 11366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65192
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.883e1

MQRankSum
type: SiteQuality
SIO_000300: -8.87e-1

QD
type: SiteQuality
SIO_000300: 1.509e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -9.693000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 3.868e0

DP
type: SiteQuality
SIO_000300: 2.174711e6

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1179
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 822
bin: 8.25e1
variant carriers: 22

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 4647
bin: 6.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1238
bin: 7.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1104
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1401
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 303
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 14644
bin: 9.75e1
variant carriers: 7874

GenotypeQuality
all individuals: 4422
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 217
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 547
bin: 9.25e1
variant carriers: 29

European (Non-Finnish)
type: Population
allele count: 6352
allele frequency: 9.868564148774198e-2
allele num: 64366
num of homozygotes: 302

Other
type: Population
allele count: 78
allele frequency: 8.783783783783784e-2
allele num: 888
num of homozygotes: 3

African
type: Population
allele count: 312
allele frequency: 3.087885985748218e-2
allele num: 10104
num of homozygotes: 5

South Asian
type: Population
allele count: 670
allele frequency: 4.185407296351824e-2
allele num: 16008
num of homozygotes: 20

East Asian
type: Population
allele count: 157
allele frequency: 1.860630481156672e-2
allele num: 8438
num of homozygotes: 3

Latino
type: Population
allele count: 446
allele frequency: 3.957409050576752e-2
allele num: 11270
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 401
allele frequency: 6.135250917992656e-2
allele num: 6536
num of homozygotes: 15

DP
type: SiteQuality
SIO_000300: 2.183895e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

QD
type: SiteQuality
SIO_000300: 1.481e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

GenotypeQuality
all individuals: 1988
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5925
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7700
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1334
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.783484929552345e-4
allele num: 11214
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

QD
type: SiteQuality
SIO_000300: 1.469e1

FS
type: SiteQuality
SIO_000300: 8.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 2.012607e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

GenotypeQuality
all individuals: 7807
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3207
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27372
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4230
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7696
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1300
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583581427757015e-5
allele num: 63148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 1.427e0

QD
type: SiteQuality
SIO_000300: 1.228e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.168e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

DP
type: SiteQuality
SIO_000300: 1.93471e6

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24306
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11092
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15784
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.204238921001927e-4
allele num: 8304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62848
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.787e0

DP
type: SiteQuality
SIO_000300: 1.888624e6

QD
type: SiteQuality
SIO_000300: 3.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

FS
type: SiteQuality
SIO_000300: 2.876e0

MQ
type: SiteQuality
SIO_000300: 4.882e1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4547
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22554
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7695
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9047
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3714
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.596067290196955e-5
allele num: 62654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

FS
type: SiteQuality
SIO_000300: 1.426e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e0

DP
type: SiteQuality
SIO_000300: 1.859254e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6653
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9773
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3841
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14084
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7690
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.454590083456063e-4
allele num: 8148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.73988e6

QD
type: SiteQuality
SIO_000300: 1.457e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: -2.161e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 9.787000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

GenotypeQuality
all individuals: 1933
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5483
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 801
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1899
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.150238638721727e-4
allele num: 9638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.926431949553337e-5
allele num: 60896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.92e1

DP
type: SiteQuality
SIO_000300: 1.729916e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 1.516e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

GenotypeQuality
all individuals: 1933
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7679
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5483
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3888
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6785
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6278
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.431695394906098e-5
allele num: 15548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

FS
type: SiteQuality
SIO_000300: 1.516e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

DP
type: SiteQuality
SIO_000300: 1.729916e6

QD
type: SiteQuality
SIO_000300: 8.630000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.273e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 909
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 893
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9152
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 947
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2758
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1160
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1073
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 456
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.253090435914119e-4
allele num: 6148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.982696659124185e-5
allele num: 60104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.099958000839983e-4
allele num: 9524
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

DP
type: SiteQuality
SIO_000300: 1.699219e6

QD
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.155e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

GenotypeQuality
all individuals: 4071
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 901
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6757
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3829
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1281
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2940
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 7654
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 820
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 869
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 377
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1609
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2265
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 448
bin: 8.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10680
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.620689655172414e-4
allele num: 9280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 26
allele frequency: 4.40558492612173e-4
allele num: 59016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 5.052206130010104e-4
allele num: 5938
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.772635814889336e-4
allele num: 7952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.924e0

FS
type: SiteQuality
SIO_000300: 1.0818e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.677682e6

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

QD
type: SiteQuality
SIO_000300: 3.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 3895
bin: 2.75e1
variant carriers: 33

GenotypeQuality
all individuals: 420
bin: 8.75e1
variant carriers: 21

GenotypeQuality
all individuals: 3025
bin: 4.25e1
variant carriers: 39

GenotypeQuality
all individuals: 1993
bin: 6.75e1
variant carriers: 20

GenotypeQuality
all individuals: 983
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 7541
bin: 2.25e1
variant carriers: 27

GenotypeQuality
all individuals: 1406
bin: 1.75e1
variant carriers: 21

GenotypeQuality
all individuals: 920
bin: 1.25e1
variant carriers: 26

GenotypeQuality
all individuals: 559
bin: 9.25e1
variant carriers: 25

GenotypeQuality
all individuals: 828
bin: 7.25e1
variant carriers: 28

GenotypeQuality
all individuals: 7525
bin: 9.75e1
variant carriers: 313

GenotypeQuality
all individuals: 5982
bin: 6.25e1
variant carriers: 25

GenotypeQuality
all individuals: 771
bin: 8.25e1
variant carriers: 35

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 34

GenotypeQuality
all individuals: 497
bin: 5.75e1
variant carriers: 42

GenotypeQuality
all individuals: 7069
bin: 3.25e1
variant carriers: 28

South Asian
type: Population
allele count: 1
allele frequency: 6.514657980456026e-5
allele num: 15350
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.322751322751323e-2
allele num: 756
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 8.551881413911061e-4
allele num: 10524
num of homozygotes: 0

African
type: Population
allele count: 123
allele frequency: 1.45149870191173e-2
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 134
allele frequency: 2.50373692077728e-2
allele num: 5352
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.834321051275444e-3
allele num: 7762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 463
allele frequency: 8.310299027174499e-3
allele num: 55714
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 3.1668e1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.524e0

QD
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

DP
type: SiteQuality
SIO_000300: 1.692663e6

VQSLOD
type: SiteQuality
SIO_000300: -6.22e0

GenotypeQuality
all individuals: 755
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1735
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6750
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5108
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4741
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7261
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.273560876209883e-4
allele num: 7852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.55e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.23e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.11e-1

DP
type: SiteQuality
SIO_000300: 1.716517e6

GenotypeQuality
all individuals: 3983
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8808
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3029
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15964
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.591292447726043e-5
allele num: 62842
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.567e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.721e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.586e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.672625e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeQuality
all individuals: 4237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23931
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1672
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8808
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1796
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590938017054855e-5
allele num: 62856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.680002e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 4.401e0

VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 159
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2949
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8853
bin: 9.75e1
variant carriers: 53

GenotypeQuality
all individuals: 27211
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8182
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023751023751024e-4
allele num: 9768
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15978
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.68048606147248e-4
allele num: 11192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.077254539858418e-3
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 6.505871152015233e-4
allele num: 63020
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.298e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 1.703241e6

QD
type: SiteQuality
SIO_000300: 1.305e1

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8810
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2397
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16008
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.213297743266198e-4
allele num: 8242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.7825311942959e-4
allele num: 11220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9810
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.733774e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.04e-1

QD
type: SiteQuality
SIO_000300: 1.582e1

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8806
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 666
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4907
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539693293096015e-5
allele num: 64948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.55e-1

FS
type: SiteQuality
SIO_000300: 8.237e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

QD
type: SiteQuality
SIO_000300: 1.247e1

MQRankSum
type: SiteQuality
SIO_000300: -9.86e-1

DP
type: SiteQuality
SIO_000300: 1.80597e6

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: -3.279e-1

GenotypeQuality
all individuals: 1470
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8806
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 624
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.99203187250996e-4
allele num: 10040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.229e0

DP
type: SiteQuality
SIO_000300: 1.812416e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.215e0

VQSLOD
type: SiteQuality
SIO_000300: -3.358e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 3.091e1

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5005
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38413
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525041176111755e-5
allele num: 65572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

FS
type: SiteQuality
SIO_000300: 4.668e0

QD
type: SiteQuality
SIO_000300: 1.018e1

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.98e-1

DP
type: SiteQuality
SIO_000300: 1.823058e6

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

GenotypeQuality
all individuals: 938
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8806
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38439
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.893153937475267e-5
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.972e0

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

DP
type: SiteQuality
SIO_000300: 1.82431e6

QD
type: SiteQuality
SIO_000300: 1.095e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.729e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.06e-1

GenotypeQuality
all individuals: 628
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8806
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.684e0

FS
type: SiteQuality
SIO_000300: 2.612e0

MQRankSum
type: SiteQuality
SIO_000300: 7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.14e-1

DP
type: SiteQuality
SIO_000300: 1.833986e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.839e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.846e1

QD
type: SiteQuality
SIO_000300: 1.327e1

GenotypeQuality
all individuals: 595
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5081
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.779e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.132e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 7.85e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

FS
type: SiteQuality
SIO_000300: 1.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-1

DP
type: SiteQuality
SIO_000300: 1.835165e6

GenotypeQuality
all individuals: 5079
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8805
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39242
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66092
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83477576711251e-5
allele num: 10168
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.121e0

FS
type: SiteQuality
SIO_000300: 6.68e-1

DP
type: SiteQuality
SIO_000300: 1.836458e6

MQ
type: SiteQuality
SIO_000300: 5.835e1

QD
type: SiteQuality
SIO_000300: 1.129e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.641e0

VQSLOD
type: SiteQuality
SIO_000300: -3.028e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.689e0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 53
allele frequency: 8.008703798845538e-4
allele num: 66178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.817396426467701e-5
allele num: 10186
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.697164724299878e-5
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.840575e6

QD
type: SiteQuality
SIO_000300: 1.234e1

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8804
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1007
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5103
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.162250116225012e-4
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.417e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

FS
type: SiteQuality
SIO_000300: 1.9663e1

DP
type: SiteQuality
SIO_000300: 1.839647e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.989e1

VQSLOD
type: SiteQuality
SIO_000300: -2.615e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

GenotypeQuality
all individuals: 66
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39552
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8803
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 447
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.69414014953921e-5
allele num: 11502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.841235e6

QD
type: SiteQuality
SIO_000300: 1.052e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 39547
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1412
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8803
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016227302889546e-5
allele num: 66308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.01e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.841929e6

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.46e-1

FS
type: SiteQuality
SIO_000300: 7.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.6e-2

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5113
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8804
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018503426001389e-5
allele num: 66258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.840899e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.358e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 125
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.087168249330411e-5
allele num: 16428
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.839067e6

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
SIO_000300: -2.002e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.583e0

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
all individuals: 5087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38844
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 8.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.919e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.836001e6

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5087
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8804
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-5
allele num: 66080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -4.919e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

QD
type: SiteQuality
SIO_000300: 8.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.836001e6

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1839
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516346212167162e-5
allele num: 65948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 8.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.25e0

DP
type: SiteQuality
SIO_000300: 1.830979e6

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8803
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4995
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.119202056051891e-5
allele num: 16342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.389999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.049e-1

DP
type: SiteQuality
SIO_000300: 1.818686e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

QD
type: SiteQuality
SIO_000300: 1.739e1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4943
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1825
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.938382031405287e-5
allele num: 10062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
type: SiteQuality
SIO_000300: 1.803306e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 6.154e0

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.431e1

GenotypeQuality
all individuals: 941
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8803
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65134
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.764241893076249e-5
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 1.788136e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 3.574e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

QD
type: SiteQuality
SIO_000300: 1.407e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2942
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8803
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 546
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33289
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.070687219799791e-5
allele num: 65132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.455e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 1.293e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

DP
type: SiteQuality
SIO_000300: 1.787964e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 8805
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 4711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.629733520336606e-4
allele num: 11408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536003932170066e-5
allele num: 65104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 6.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.145e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

DP
type: SiteQuality
SIO_000300: 1.78822e6

GenotypeQuality
all individuals: 1004
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3106
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33285
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4708
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8801
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537137235612395e-5
allele num: 65056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10004
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.924e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.783908e6

GenotypeQuality
all individuals: 1922
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18286
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1018
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4538
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5063
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8801
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3581
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1291
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64184
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1