5-68680780-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680780
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680779
    reference: chr 5
allele count: 21
allele frequency: 3.10164534900895e-4
allele num: 67706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.645+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.645+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.678+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.645+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+13783delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.255+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.645+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.387+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.150+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.678+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.645+21delC
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.150+21delC
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11601
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5389
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11940
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: TC
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-68680781-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680782
    reference: chr 5
allele count: 1858
allele frequency: 3.57596520266369e-2
allele num: 51958
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.678+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.645+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.678+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.645+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+13800dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.645+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.645+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.645+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.387+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.255+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.150+38dupT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.150+38dupT
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 7.5e0
  variant carriers: 1094
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18033
  bin: 1.25e1
  variant carriers: 1709
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 1.75e1
  variant carriers: 741
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

5-68680781-C-CTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680783
    reference: chr 5
allele count: 77
allele frequency: 1.481966203472035e-3
allele num: 51958
alternate allele: CTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.645+37_645+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.387+37_387+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.645+37_645+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.645+37_645+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+13799_250+13800dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.678+37_678+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.678+37_678+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.645+37_645+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.645+37_645+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.150+37_150+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.255+37_255+38dupTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.150+37_150+38dupTT
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18033
  bin: 1.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 7.5e0
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 1.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

5-68680781-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680781
    reference: chr 5
allele count: 56
allele frequency: 1.077793602525116e-3
allele num: 51958
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 18033
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 23995
  bin: 2.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.5e0
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6044
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 5.25e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 1
  allele frequency: 3.34448160535117e-4
  allele num: 2990
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.594706798131811e-4
  allele num: 3854
  num of homozygotes: 0
population: African
  type: Population
  allele count: 5
  allele frequency: 1.224889759921607e-3
  allele num: 4082
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 408
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

5-68680781-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680780
    reference: chr 5
allele count: 21422
allele frequency: 4.122945455945187e-1
allele num: 51958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.150+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.678+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.645+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.678+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.645+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.387+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.150+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.645+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.645+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+13800delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.255+38delT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.645+38delT
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.75e1
  variant carriers: 1078
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 7.5e0
  variant carriers: 4440
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 525
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 2921
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 1.75e1
  variant carriers: 7674
genotype depth: GenotypeDepth
  all individuals: 18033
  bin: 1.25e1
  variant carriers: 10754
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
num of homozygotes: 4
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: CT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

5-68680781-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680779
    reference: chr 5
allele count: 2109
allele frequency: 4.059047692366912e-2
allele num: 51958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.387+37_387+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.645+37_645+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+13799_250+13800delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.678+37_678+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.255+37_255+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.645+37_645+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.150+37_150+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.645+37_645+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.150+37_150+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.678+37_678+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.645+37_645+38delTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.645+37_645+38delTT
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 1.75e1
  variant carriers: 913
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 7.5e0
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 18033
  bin: 1.25e1
  variant carriers: 1391
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: CTT
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

5-68680781-CTTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680778
    reference: chr 5
allele count: 109
allele frequency: 2.097848262057816e-3
allele num: 51958
alternate allele: C
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18033
  bin: 1.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 7726
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15631
  bin: 1.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4927
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1884
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23995
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6044
  bin: 9.75e1
  variant carriers: 51
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 12
  allele frequency: 2.224694104560623e-3
  allele num: 5394
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 18
  allele frequency: 2.908855850032321e-3
  allele num: 6188
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 1
  allele frequency: 2.450980392156863e-3
  allele num: 408
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 4
  allele frequency: 1.037882719252724e-3
  allele num: 3854
  num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: CTTT
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

5-68680790-T-TCAACAAATGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680790
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680800
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 100578
alternate allele: TCAACAAATGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18835
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9083
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

5-68680790-T-TCAACAAATGATATACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680790
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680806
    reference: chr 5
allele count: 2
allele frequency: 1.98850643281831e-5
allele num: 100578
alternate allele: TCAACAAATGATATACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5394
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13662
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18835
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

5-68680797-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680797
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680797
    reference: chr 5
allele count: 1
allele frequency: 1.200163222198219e-5
allele num: 83322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+13799T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.255+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.150+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.150+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.645+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.645+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.678+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.645+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.678+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.387+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.645+37T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.645+37T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14983
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/5-68680809-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68680809
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68680809
    reference: chr 5
allele count: 104
allele frequency: 1.528557570769276e-3
allele num: 68038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.645+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.150+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.645+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+13811C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.255+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.645+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.678+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.645+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.678+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.150+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.387+49C>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.645+49C>A
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18560
  bin: 7.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10397
  bin: 1.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 20759
  bin: 1.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3303
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 4
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-68681832-ATAAAACTATAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681832
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681821
    reference: chr 5
allele count: 1
allele frequency: 2.708265626692666e-5
allele num: 36924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: ATAAAACTATAC
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-68681833-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681833
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681832
    reference: chr 5
allele count: 4
allele frequency: 1.078923234611857e-4
allele num: 37074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.679-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.646-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.646-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.646-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.646-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14839delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.646-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.151-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.256-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.151-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.388-33delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.679-33delA
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2082
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22358
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10355
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: TA
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

5-68681834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681834
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681834
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 37202
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.151-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.646-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.646-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.256-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.679-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.646-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.646-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.151-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.646-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.679-36A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14836A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.388-36A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 22705
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

5-68681838-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681838
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681838
    reference: chr 5
allele count: 1
allele frequency: 2.643544464417892e-5
allele num: 37828
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.388-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.679-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.646-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.646-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.646-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.256-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.151-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.646-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.679-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.151-32C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14840C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.646-32C>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

5-68681841-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681841
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681841
    reference: chr 5
allele count: 2
allele frequency: 5.12321327936882e-5
allele num: 39038
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.679-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.151-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.256-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.646-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.388-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.151-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14843T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.646-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.646-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.646-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.646-29T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.679-29T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13352
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum

5-68681848-ATTTATTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681841
    reference: chr 5
allele count: 1
allele frequency: 2.25458808675655e-5
allele num: 44354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.151-13_151-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.151-13_151-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.679-13_679-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.256-13_256-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.646-13_646-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.646-13_646-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.646-13_646-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.646-13_646-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.646-13_646-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.388-13_388-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.679-13_679-7delTTATTTT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: ATTTATTT
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-68681859-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681859
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681859
    reference: chr 5
allele count: 1
allele frequency: 1.527837193668643e-5
allele num: 65452
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.646-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.388-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.646-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.646-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.151-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.646-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.679-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.256-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14861A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.646-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.151-11A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.679-11A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-68681875-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681875
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681875
    reference: chr 5
allele count: 4
allele frequency: 3.730508095202566e-5
allele num: 107224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.651A>C
  hgvsp: ENSP00000346271.3:p.Leu217Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.156A>C
  hgvsp: ENSP00000350725.2:p.Leu52Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.684A>C
  hgvsp: ENSP00000370151.3:p.Leu228Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.261A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.156A>C
  hgvsp: ENSP00000427743.1:p.Leu52Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.651A>C
  hgvsp: ENSP00000346938.5:p.Leu217Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.651A>C
  hgvsp: ENSP00000355226.2:p.Leu217Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.651A>C
  hgvsp: ENSP00000311227.7:p.Leu217Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.684A>C
  hgvsp: ENSP00000426191.1:p.Leu228Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.393A>C
  hgvsp: ENSP00000282891.6:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.651A>C
  hgvsp: ENSP00000303134.4:p.Leu217Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14877A>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45776
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu228Phe
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

5-68681889-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681889
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681889
    reference: chr 5
allele count: 1
allele frequency: 8.5966782435267e-6
allele num: 116324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.170A>T
  hgvsp: ENSP00000350725.2:p.Tyr57Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.698A>T
  hgvsp: ENSP00000426191.1:p.Tyr233Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.665A>T
  hgvsp: ENSP00000303134.4:p.Tyr222Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.170A>T
  hgvsp: ENSP00000427743.1:p.Tyr57Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.275A>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.665A>T
  hgvsp: ENSP00000355226.2:p.Tyr222Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14891A>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.698A>T
  hgvsp: ENSP00000370151.3:p.Tyr233Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.665A>T
  hgvsp: ENSP00000346938.5:p.Tyr222Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.407A>T
  hgvsp: ENSP00000282891.6:p.Tyr136Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.665A>T
  hgvsp: ENSP00000311227.7:p.Tyr222Phe
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.665A>T
  hgvsp: ENSP00000346271.3:p.Tyr222Phe
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr233Phe
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

5-68681891-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681891
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681891
    reference: chr 5
allele count: 9
allele frequency: 7.694149027117601e-5
allele num: 116972
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.667C>T
  hgvsp: ENSP00000303134.4:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.700C>T
  hgvsp: ENSP00000426191.1:p.Arg234Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.700C>T
  hgvsp: ENSP00000370151.3:p.Arg234Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.172C>T
  hgvsp: ENSP00000350725.2:p.Arg58Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.667C>T
  hgvsp: ENSP00000346938.5:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.277C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.667C>T
  hgvsp: ENSP00000355226.2:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.667C>T
  hgvsp: ENSP00000311227.7:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.667C>T
  hgvsp: ENSP00000346271.3:p.Arg223Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.172C>T
  hgvsp: ENSP00000427743.1:p.Arg58Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14893C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.409C>T
  hgvsp: ENSP00000282891.6:p.Arg137Trp
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49480
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg234Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

5-68681892-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681892
    reference: chr 5
allele count: 2
allele frequency: 1.704100064755802e-5
allele num: 117364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.668G>A
  hgvsp: ENSP00000355226.2:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.701G>A
  hgvsp: ENSP00000426191.1:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.173G>A
  hgvsp: ENSP00000350725.2:p.Arg58Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.701G>A
  hgvsp: ENSP00000370151.3:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.668G>A
  hgvsp: ENSP00000311227.7:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.410G>A
  hgvsp: ENSP00000282891.6:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.668G>A
  hgvsp: ENSP00000346271.3:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.278G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.173G>A
  hgvsp: ENSP00000427743.1:p.Arg58Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14894G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.668G>A
  hgvsp: ENSP00000303134.4:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.668G>A
  hgvsp: ENSP00000346938.5:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg234Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-68681894-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681894
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681894
    reference: chr 5
allele count: 9
allele frequency: 7.630740012209184e-5
allele num: 117944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.670G>A
  hgvsp: ENSP00000346938.5:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.670G>A
  hgvsp: ENSP00000311227.7:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.412G>A
  hgvsp: ENSP00000282891.6:p.Asp138Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.175G>A
  hgvsp: ENSP00000427743.1:p.Asp59Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.703G>A
  hgvsp: ENSP00000370151.3:p.Asp235Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.280G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14896G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.670G>A
  hgvsp: ENSP00000303134.4:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.175G>A
  hgvsp: ENSP00000350725.2:p.Asp59Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.670G>A
  hgvsp: ENSP00000355226.2:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.703G>A
  hgvsp: ENSP00000426191.1:p.Asp235Asn
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.670G>A
  hgvsp: ENSP00000346271.3:p.Asp224Asn
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49650
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp235Asn
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-68681910-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681910
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681910
    reference: chr 5
allele count: 1
allele frequency: 8.354358468813179e-6
allele num: 119698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.686A>G
  hgvsp: ENSP00000303134.4:p.His229Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.719A>G
  hgvsp: ENSP00000426191.1:p.His240Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14912A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.191A>G
  hgvsp: ENSP00000427743.1:p.His64Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.296A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.686A>G
  hgvsp: ENSP00000346271.3:p.His229Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.686A>G
  hgvsp: ENSP00000346938.5:p.His229Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.719A>G
  hgvsp: ENSP00000370151.3:p.His240Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.191A>G
  hgvsp: ENSP00000350725.2:p.His64Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.686A>G
  hgvsp: ENSP00000311227.7:p.His229Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.686A>G
  hgvsp: ENSP00000355226.2:p.His229Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.428A>G
  hgvsp: ENSP00000282891.6:p.His143Arg
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His240Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

5-68681910-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681910
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681910
    reference: chr 5
allele count: 1
allele frequency: 8.354358468813179e-6
allele num: 119698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.686A>T
  hgvsp: ENSP00000346938.5:p.His229Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.686A>T
  hgvsp: ENSP00000311227.7:p.His229Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.191A>T
  hgvsp: ENSP00000427743.1:p.His64Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.296A>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.686A>T
  hgvsp: ENSP00000303134.4:p.His229Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.719A>T
  hgvsp: ENSP00000426191.1:p.His240Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.686A>T
  hgvsp: ENSP00000346271.3:p.His229Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.191A>T
  hgvsp: ENSP00000350725.2:p.His64Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.686A>T
  hgvsp: ENSP00000355226.2:p.His229Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.719A>T
  hgvsp: ENSP00000370151.3:p.His240Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14912A>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.428A>T
  hgvsp: ENSP00000282891.6:p.His143Leu
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His240Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-68681914-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681914
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681914
    reference: chr 5
allele count: 1
allele frequency: 8.338197281747686e-6
allele num: 119930
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.690A>G
  hgvsp: ENST00000354312.3:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.690A>G
  hgvsp: ENST00000345306.6:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.195A>G
  hgvsp: ENST00000358030.2:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14916A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.690A>G
  hgvsp: ENST00000305138.4:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.432A>G
  hgvsp: ENST00000282891.6:c.432A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.300A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.723A>G
  hgvsp: ENST00000509734.1:c.723A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.690A>G
  hgvsp: ENST00000354868.5:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.195A>G
  hgvsp: ENST00000521422.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.723A>G
  hgvsp: ENST00000380774.3:c.723A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.690A>G
  hgvsp: ENST00000361732.2:c.690A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49991
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu241Glu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

5-68681915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681915
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681915
    reference: chr 5
allele count: 7
allele frequency: 5.834986579530867e-5
allele num: 119966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14917G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.691G>A
  hgvsp: ENSP00000355226.2:p.Val231Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.724G>A
  hgvsp: ENSP00000370151.3:p.Val242Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.691G>A
  hgvsp: ENSP00000346271.3:p.Val231Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.196G>A
  hgvsp: ENSP00000350725.2:p.Val66Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.691G>A
  hgvsp: ENSP00000311227.7:p.Val231Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.196G>A
  hgvsp: ENSP00000427743.1:p.Val66Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.433G>A
  hgvsp: ENSP00000282891.6:p.Val145Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.724G>A
  hgvsp: ENSP00000426191.1:p.Val242Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.691G>A
  hgvsp: ENSP00000303134.4:p.Val231Ile
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.301G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.691G>A
  hgvsp: ENSP00000346938.5:p.Val231Ile
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val242Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

5-68681918-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681918
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681918
    reference: chr 5
allele count: 9
allele frequency: 7.494004796163069e-5
allele num: 120096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.304C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.727C>T
  hgvsp: ENST00000380774.3:c.727C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.727C>T
  hgvsp: ENST00000509734.1:c.727C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.694C>T
  hgvsp: ENST00000354868.5:c.694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.694C>T
  hgvsp: ENST00000305138.4:c.694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.199C>T
  hgvsp: ENST00000521422.1:c.199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.199C>T
  hgvsp: ENST00000358030.2:c.199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.694C>T
  hgvsp: ENST00000345306.6:c.694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.694C>T
  hgvsp: ENST00000354312.3:c.694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.694C>T
  hgvsp: ENST00000361732.2:c.694C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14920C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.436C>T
  hgvsp: ENST00000282891.6:c.436C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu243Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

5-68681920-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681920
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681920
    reference: chr 5
allele count: 1
allele frequency: 8.32251406504877e-6
allele num: 120156
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.729A>G
  hgvsp: ENST00000509734.1:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.696A>G
  hgvsp: ENST00000361732.2:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.696A>G
  hgvsp: ENST00000354868.5:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.201A>G
  hgvsp: ENST00000358030.2:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.729A>G
  hgvsp: ENST00000380774.3:c.729A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.201A>G
  hgvsp: ENST00000521422.1:c.201A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.306A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.438A>G
  hgvsp: ENST00000282891.6:c.438A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.696A>G
  hgvsp: ENST00000345306.6:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14922A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.696A>G
  hgvsp: ENST00000305138.4:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.696A>G
  hgvsp: ENST00000354312.3:c.696A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.729A>G
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

5-68681931-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681931
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681931
    reference: chr 5
allele count: 1
allele frequency: 8.304544246611745e-6
allele num: 120416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14933C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+9C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+9C>T
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

5-68681937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681937
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681937
    reference: chr 5
allele count: 2
allele frequency: 1.659861235600704e-5
allele num: 120492
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14939A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+15A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+15A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-68681944-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681944
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681943
    reference: chr 5
allele count: 1
allele frequency: 8.294487483618387e-6
allele num: 120562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14950delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+26delA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+26delA
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: TA
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

5-68681945-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681945
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681945
    reference: chr 5
allele count: 14
allele frequency: 1.161151198473916e-4
allele num: 120570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+23A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14947A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+23A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/5-68681948-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681948
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681948
    reference: chr 5
allele count: 1
allele frequency: 8.293386853323161e-6
allele num: 120578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14950A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+26A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+26A>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

5-68681954-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681954
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681954
    reference: chr 5
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14956A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+32A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+32A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

5-68681955-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681955
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681955
    reference: chr 5
allele count: 1
allele frequency: 8.288025460814215e-6
allele num: 120656
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14957A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+33A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

5-68681957-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681957
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681957
    reference: chr 5
allele count: 9
allele frequency: 7.458975634012929e-5
allele num: 120660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.308+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.203+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.698+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.698+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.698+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.731+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.698+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.731+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.203+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14959T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.440+35T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.698+35T>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7587
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

5-68681969-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681969
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681969
    reference: chr 5
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.309-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.732-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.699-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.699-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.204-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.699-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14971G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.732-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.204-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.441-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.699-38G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.699-38G>A
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

5-68681980-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681980
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681980
    reference: chr 5
allele count: 1
allele frequency: 8.284180528862085e-6
allele num: 120712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14982C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.204-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.732-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.699-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.699-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.699-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.204-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.732-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.309-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.699-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.441-27C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.699-27C>T
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

5-68681985-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681985
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681985
    reference: chr 5
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.204-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.699-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.699-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.699-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.732-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14987T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.441-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.732-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.699-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.204-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.309-22T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.699-22T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

5-68681986-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681986
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681986
    reference: chr 5
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.699-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.204-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.204-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14988T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.699-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.699-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.699-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.309-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.699-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.732-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.441-21T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.732-21T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

5-68681993-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681993
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681993
    reference: chr 5
allele count: 2
allele frequency: 1.65582103886212e-5
allele num: 120786
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.699-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.699-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.699-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.441-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.204-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.699-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.699-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.732-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.309-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.204-14T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14995T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.732-14T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-68681997-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68681997
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68681997
    reference: chr 5
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+14999G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.699-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.699-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.732-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.699-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.699-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.309-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.204-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.732-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.441-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.699-10G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.204-10G>T
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

5-68682027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682027
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682027
    reference: chr 5
allele count: 11
allele frequency: 9.099632705734423e-5
allele num: 120884
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.752G>A
  hgvsp: ENSP00000426191.1:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.719G>A
  hgvsp: ENSP00000311227.7:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.329G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.719G>A
  hgvsp: ENSP00000355226.2:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.752G>A
  hgvsp: ENSP00000370151.3:p.Arg251Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15029G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.719G>A
  hgvsp: ENSP00000346271.3:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.719G>A
  hgvsp: ENSP00000303134.4:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.224G>A
  hgvsp: ENSP00000427743.1:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.461G>A
  hgvsp: ENSP00000282891.6:p.Arg154Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.719G>A
  hgvsp: ENSP00000346938.5:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.224G>A
  hgvsp: ENSP00000350725.2:p.Arg75Gln
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg251Gln
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

5-68682028-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682028
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682028
    reference: chr 5
allele count: 1
allele frequency: 8.272393368849475e-6
allele num: 120884
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.720A>G
  hgvsp: ENST00000361732.2:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.753A>G
  hgvsp: ENST00000380774.3:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.462A>G
  hgvsp: ENST00000282891.6:c.462A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.720A>G
  hgvsp: ENST00000354868.5:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.753A>G
  hgvsp: ENST00000509734.1:c.753A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.720A>G
  hgvsp: ENST00000345306.6:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15030A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.330A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.225A>G
  hgvsp: ENST00000521422.1:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.720A>G
  hgvsp: ENST00000305138.4:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.720A>G
  hgvsp: ENST00000354312.3:c.720A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.225A>G
  hgvsp: ENST00000358030.2:c.225A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg251Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

5-68682039-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682039
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682039
    reference: chr 5
allele count: 31
allele frequency: 2.564060147888372e-4
allele num: 120902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.236T>C
  hgvsp: ENSP00000427743.1:p.Ile79Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.731T>C
  hgvsp: ENSP00000346938.5:p.Ile244Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15041T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.731T>C
  hgvsp: ENSP00000311227.7:p.Ile244Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.731T>C
  hgvsp: ENSP00000346271.3:p.Ile244Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.473T>C
  hgvsp: ENSP00000282891.6:p.Ile158Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.764T>C
  hgvsp: ENSP00000370151.3:p.Ile255Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.764T>C
  hgvsp: ENSP00000426191.1:p.Ile255Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.731T>C
  hgvsp: ENSP00000303134.4:p.Ile244Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.236T>C
  hgvsp: ENSP00000350725.2:p.Ile79Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.731T>C
  hgvsp: ENSP00000355226.2:p.Ile244Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.341T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49187
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile255Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-68682040-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682040
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682040
    reference: chr 5
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.765A>G
  hgvsp: ENSP00000426191.1:p.Ile255Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.765A>G
  hgvsp: ENSP00000370151.3:p.Ile255Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.342A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.474A>G
  hgvsp: ENSP00000282891.6:p.Ile158Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.732A>G
  hgvsp: ENSP00000346938.5:p.Ile244Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.237A>G
  hgvsp: ENSP00000350725.2:p.Ile79Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.732A>G
  hgvsp: ENSP00000303134.4:p.Ile244Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.732A>G
  hgvsp: ENSP00000311227.7:p.Ile244Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.732A>G
  hgvsp: ENSP00000355226.2:p.Ile244Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.237A>G
  hgvsp: ENSP00000427743.1:p.Ile79Met
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15042A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.732A>G
  hgvsp: ENSP00000346271.3:p.Ile244Met
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile255Met
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

5-68682048-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682048
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682048
    reference: chr 5
allele count: 1
allele frequency: 8.272940865018697e-6
allele num: 120876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.740T>C
  hgvsp: ENSP00000346271.3:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.773T>C
  hgvsp: ENSP00000370151.3:p.Ile258Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.245T>C
  hgvsp: ENSP00000350725.2:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.740T>C
  hgvsp: ENSP00000303134.4:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.773T>C
  hgvsp: ENSP00000426191.1:p.Ile258Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.740T>C
  hgvsp: ENSP00000355226.2:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.245T>C
  hgvsp: ENSP00000427743.1:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.740T>C
  hgvsp: ENSP00000311227.7:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.350T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.482T>C
  hgvsp: ENSP00000282891.6:p.Ile161Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.740T>C
  hgvsp: ENSP00000346938.5:p.Ile247Thr
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15050T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49149
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile258Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

5-68682051-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682051
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682051
    reference: chr 5
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.776C>G
  hgvsp: ENSP00000426191.1:p.Ser259Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.776C>G
  hgvsp: ENSP00000370151.3:p.Ser259Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.353C>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.743C>G
  hgvsp: ENSP00000311227.7:p.Ser248Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.485C>G
  hgvsp: ENSP00000282891.6:p.Ser162Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.2C>G
  hgvsp: ENSP00000424289.1:p.Ser1?
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.743C>G
  hgvsp: ENSP00000355226.2:p.Ser248Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.743C>G
  hgvsp: ENSP00000346271.3:p.Ser248Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.743C>G
  hgvsp: ENSP00000303134.4:p.Ser248Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.743C>G
  hgvsp: ENSP00000346938.5:p.Ser248Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.248C>G
  hgvsp: ENSP00000427743.1:p.Ser83Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.248C>G
  hgvsp: ENSP00000350725.2:p.Ser83Trp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15053C>G
  variant of: http://identifiers.org/hgnc/9807
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49148
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1?
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

5-68682051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682051
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682051
    reference: chr 5
allele count: 3
allele frequency: 2.481800132362674e-5
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.776C>T
  hgvsp: ENSP00000370151.3:p.Ser259Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.2C>T
  hgvsp: ENSP00000424289.1:p.Ser1?
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.743C>T
  hgvsp: ENSP00000311227.7:p.Ser248Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.743C>T
  hgvsp: ENSP00000303134.4:p.Ser248Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.248C>T
  hgvsp: ENSP00000427743.1:p.Ser83Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.743C>T
  hgvsp: ENSP00000355226.2:p.Ser248Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.743C>T
  hgvsp: ENSP00000346271.3:p.Ser248Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.743C>T
  hgvsp: ENSP00000346938.5:p.Ser248Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.485C>T
  hgvsp: ENSP00000282891.6:p.Ser162Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.248C>T
  hgvsp: ENSP00000350725.2:p.Ser83Leu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15053C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.353C>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.776C>T
  hgvsp: ENSP00000426191.1:p.Ser259Leu
  variant of: http://identifiers.org/hgnc/9807
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser1?
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-68682052-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682052
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682052
    reference: chr 5
allele count: 3
allele frequency: 2.481718010654843e-5
allele num: 120884
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.777G>A
  hgvsp: ENST00000509734.1:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.777G>A
  hgvsp: ENST00000380774.3:c.777G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.3G>A
  hgvsp: ENST00000508320.1:c.3G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.744G>A
  hgvsp: ENST00000354312.3:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.744G>A
  hgvsp: ENST00000345306.6:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.486G>A
  hgvsp: ENST00000282891.6:c.486G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.744G>A
  hgvsp: ENST00000354868.5:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.744G>A
  hgvsp: ENST00000305138.4:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.744G>A
  hgvsp: ENST00000361732.2:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.249G>A
  hgvsp: ENST00000521422.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15054G>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.249G>A
  hgvsp: ENST00000358030.2:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.354G>A
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser259Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

5-68682067-A-AGATG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682067
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682071
    reference: chr 5
allele count: 1
allele frequency: 8.276638360563474e-6
allele num: 120822
alternate allele: AGATG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.762_763insGGAT
  hgvsp: ENSP00000303134.4:p.Asn255GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.762_763insGGAT
  hgvsp: ENSP00000346938.5:p.Asn255GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.762_763insGGAT
  hgvsp: ENSP00000311227.7:p.Asn255GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.372_373insGGAT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.504_505insGGAT
  hgvsp: ENSP00000282891.6:p.Asn169GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.267_268insGGAT
  hgvsp: ENSP00000427743.1:p.Asn90GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.795_796insGGAT
  hgvsp: ENSP00000370151.3:p.Asn266GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.267_268insGGAT
  hgvsp: ENSP00000350725.2:p.Asn90GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.795_796insGGAT
  hgvsp: ENSP00000426191.1:p.Asn266GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.762_763insGGAT
  hgvsp: ENSP00000355226.2:p.Asn255GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.762_763insGGAT
  hgvsp: ENSP00000346271.3:p.Asn255GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15072_250+15073insGGAT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.21_22insGGAT
  hgvsp: ENSP00000424289.1:p.Asn8GlyfsTer2
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn266GlyfsTer2
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

5-68682070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682070
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682070
    reference: chr 5
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.372T>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.267T>C
  hgvsp: ENST00000358030.2:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.762T>C
  hgvsp: ENST00000361732.2:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.267T>C
  hgvsp: ENST00000521422.1:c.267T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.762T>C
  hgvsp: ENST00000345306.6:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.762T>C
  hgvsp: ENST00000354868.5:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.762T>C
  hgvsp: ENST00000305138.4:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.795T>C
  hgvsp: ENST00000380774.3:c.795T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.795T>C
  hgvsp: ENST00000509734.1:c.795T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.504T>C
  hgvsp: ENST00000282891.6:c.504T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.21T>C
  hgvsp: ENST00000508320.1:c.21T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.762T>C
  hgvsp: ENST00000354312.3:c.762T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15072T>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp265Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

5-68682070-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682070
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682070
    reference: chr 5
allele count: 1
allele frequency: 8.278556881964336e-6
allele num: 120794
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.267T>G
  hgvsp: ENSP00000350725.2:p.Asp89Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.267T>G
  hgvsp: ENSP00000427743.1:p.Asp89Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.795T>G
  hgvsp: ENSP00000370151.3:p.Asp265Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.504T>G
  hgvsp: ENSP00000282891.6:p.Asp168Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.21T>G
  hgvsp: ENSP00000424289.1:p.Asp7Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.762T>G
  hgvsp: ENSP00000346271.3:p.Asp254Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.795T>G
  hgvsp: ENSP00000426191.1:p.Asp265Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.762T>G
  hgvsp: ENSP00000355226.2:p.Asp254Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15072T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.762T>G
  hgvsp: ENSP00000346938.5:p.Asp254Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.762T>G
  hgvsp: ENSP00000303134.4:p.Asp254Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.762T>G
  hgvsp: ENSP00000311227.7:p.Asp254Glu
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.372T>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp265Glu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

5-68682071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682071
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682071
    reference: chr 5
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.796A>G
  hgvsp: ENSP00000370151.3:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.763A>G
  hgvsp: ENSP00000346938.5:p.Asn255Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.373A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.505A>G
  hgvsp: ENSP00000282891.6:p.Asn169Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.763A>G
  hgvsp: ENSP00000311227.7:p.Asn255Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.268A>G
  hgvsp: ENSP00000350725.2:p.Asn90Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.763A>G
  hgvsp: ENSP00000355226.2:p.Asn255Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.796A>G
  hgvsp: ENSP00000426191.1:p.Asn266Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.268A>G
  hgvsp: ENSP00000427743.1:p.Asn90Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.763A>G
  hgvsp: ENSP00000346271.3:p.Asn255Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15073A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.22A>G
  hgvsp: ENSP00000424289.1:p.Asn8Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.763A>G
  hgvsp: ENSP00000303134.4:p.Asn255Asp
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn266Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

5-68682073-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682073
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682073
    reference: chr 5
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15075T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.765T>A
  hgvsp: ENSP00000311227.7:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.270T>A
  hgvsp: ENSP00000350725.2:p.Asn90Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.270T>A
  hgvsp: ENSP00000427743.1:p.Asn90Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.765T>A
  hgvsp: ENSP00000346271.3:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.765T>A
  hgvsp: ENSP00000346938.5:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.765T>A
  hgvsp: ENSP00000303134.4:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.798T>A
  hgvsp: ENSP00000426191.1:p.Asn266Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.765T>A
  hgvsp: ENSP00000355226.2:p.Asn255Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.507T>A
  hgvsp: ENSP00000282891.6:p.Asn169Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.798T>A
  hgvsp: ENSP00000370151.3:p.Asn266Lys
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.375T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.24T>A
  hgvsp: ENSP00000424289.1:p.Asn8Lys
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn266Lys
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

5-68682096-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682096
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682096
    reference: chr 5
allele count: 2
allele frequency: 1.66008167601846e-5
allele num: 120476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.788A>G
  hgvsp: ENSP00000311227.7:p.Lys263Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.398A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.293A>G
  hgvsp: ENSP00000427743.1:p.Lys98Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.530A>G
  hgvsp: ENSP00000282891.6:p.Lys177Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.293A>G
  hgvsp: ENSP00000350725.2:p.Lys98Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.47A>G
  hgvsp: ENSP00000424289.1:p.Lys16Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.821A>G
  hgvsp: ENSP00000370151.3:p.Lys274Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.788A>G
  hgvsp: ENSP00000346938.5:p.Lys263Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.821A>G
  hgvsp: ENSP00000426191.1:p.Lys274Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15098A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.788A>G
  hgvsp: ENSP00000355226.2:p.Lys263Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.788A>G
  hgvsp: ENSP00000346271.3:p.Lys263Arg
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.788A>G
  hgvsp: ENSP00000303134.4:p.Lys263Arg
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Lys274Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

5-68682125-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682125
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682125
    reference: chr 5
allele count: 1
allele frequency: 8.340283569641367e-6
allele num: 119900
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.322A>G
  hgvsp: ENSP00000350725.2:p.Asn108Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.76A>G
  hgvsp: ENSP00000424289.1:p.Asn26Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.850A>G
  hgvsp: ENSP00000426191.1:p.Asn284Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.850A>G
  hgvsp: ENSP00000370151.3:p.Asn284Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.817A>G
  hgvsp: ENSP00000355226.2:p.Asn273Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.322A>G
  hgvsp: ENSP00000427743.1:p.Asn108Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.817A>G
  hgvsp: ENSP00000303134.4:p.Asn273Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.817A>G
  hgvsp: ENSP00000311227.7:p.Asn273Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.817A>G
  hgvsp: ENSP00000346271.3:p.Asn273Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15127A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.817A>G
  hgvsp: ENSP00000346938.5:p.Asn273Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.559A>G
  hgvsp: ENSP00000282891.6:p.Asn187Asp
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.427A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn284Asp
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

5-68682128-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682128
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682128
    reference: chr 5
allele count: 1
allele frequency: 8.342927700188551e-6
allele num: 119862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.853A>G
  hgvsp: ENSP00000370151.3:p.Ile285Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.79A>G
  hgvsp: ENSP00000424289.1:p.Ile27Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15130A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.820A>G
  hgvsp: ENSP00000346938.5:p.Ile274Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.853A>G
  hgvsp: ENSP00000426191.1:p.Ile285Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.325A>G
  hgvsp: ENSP00000350725.2:p.Ile109Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.820A>G
  hgvsp: ENSP00000311227.7:p.Ile274Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.820A>G
  hgvsp: ENSP00000303134.4:p.Ile274Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.430A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.562A>G
  hgvsp: ENSP00000282891.6:p.Ile188Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.325A>G
  hgvsp: ENSP00000427743.1:p.Ile109Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.820A>G
  hgvsp: ENSP00000355226.2:p.Ile274Val
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.820A>G
  hgvsp: ENSP00000346271.3:p.Ile274Val
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile285Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

5-68682128-ATTAGGTAAGAAAGAAATTTCTGCTTATAAAGGTCACATACATATTATATTTTTAAATTAATCATTTAACTGCTATCTTTCTTTATAAAAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682128
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682038
    reference: chr 5
allele count: 1
allele frequency: 8.342927700188551e-6
allele num: 119862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47901
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: ATTAGGTAAGAAAGAAATTTCTGCTTATAAAGGTCACATACATATTATATTTTTAAATTAATCATTTAACTGCTATCTTTCTTTATAAAAC
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-68682129-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682129
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682129
    reference: chr 5
allele count: 1
allele frequency: 8.34432002136146e-6
allele num: 119842
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.854T>G
  hgvsp: ENSP00000370151.3:p.Ile285Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.821T>G
  hgvsp: ENSP00000311227.7:p.Ile274Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.80T>G
  hgvsp: ENSP00000424289.1:p.Ile27Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.563T>G
  hgvsp: ENSP00000282891.6:p.Ile188Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.431T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.326T>G
  hgvsp: ENSP00000427743.1:p.Ile109Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.326T>G
  hgvsp: ENSP00000350725.2:p.Ile109Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.854T>G
  hgvsp: ENSP00000426191.1:p.Ile285Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.821T>G
  hgvsp: ENSP00000303134.4:p.Ile274Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.821T>G
  hgvsp: ENSP00000346271.3:p.Ile274Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.821T>G
  hgvsp: ENSP00000346938.5:p.Ile274Ser
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15131T>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.821T>G
  hgvsp: ENSP00000355226.2:p.Ile274Ser
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47891
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile285Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

5-68682147-T-TAAGCCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682147
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682153
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 119578
alternate allele: TAAGCCA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.824+15_824+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.329+15_329+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.824+15_824+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.329+15_329+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.434+15_434+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.857+15_857+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.824+15_824+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.824+15_824+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.824+15_824+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.566+15_566+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.83+15_83+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.857+15_857+16insAAGCCA
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-68682150-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682150
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682150
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 119464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.824+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.824+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.83+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.857+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.434+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.824+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.566+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.824+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.824+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15152G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.329+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.857+18G>T
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.329+18G>T
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

5-68682152-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682152
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682152
    reference: chr 5
allele count: 1
allele frequency: 8.378577652657685e-6
allele num: 119352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.824+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.824+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15154T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.857+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.434+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.329+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.824+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.83+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.824+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.824+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.329+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.857+20T>A
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.566+20T>A
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/5-68682154-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682154
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682154
    reference: chr 5
allele count: 1
allele frequency: 8.380403265005112e-6
allele num: 119326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.857+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.824+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.824+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.329+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.824+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.434+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.857+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.83+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.824+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.329+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.824+22A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15156A>C
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.566+22A>C
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

5-68682165-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682165
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682165
    reference: chr 5
allele count: 2
allele frequency: 1.684607739087953e-5
allele num: 118722
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.857+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.329+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.329+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.83+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  hgvsc: ENST00000504177.1:n.250+15167A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.857+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.434+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.824+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.566+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.824+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.824+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.824+33A>G
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.824+33A>G
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

5-68682168-CATATT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 68682168
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 68682163
    reference: chr 5
allele count: 1
allele frequency: 8.435259384226064e-6
allele num: 118550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000427743
  ensembl transcript: ENST00000521422
  gene symbol: RAD17
  hgvsc: ENST00000521422.1:c.330-45_329+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000426191
  ensembl transcript: ENST00000509734
  gene symbol: RAD17
  hgvsc: ENST00000509734.1:c.858-45_857+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000311227
  ensembl transcript: ENST00000345306
  gene symbol: RAD17
  hgvsc: ENST00000345306.6:c.825-45_824+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000282891
  ensembl transcript: ENST00000282891
  gene symbol: RAD17
  hgvsc: ENST00000282891.6:c.567-45_566+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000370151
  ensembl transcript: ENST00000380774
  gene symbol: RAD17
  hgvsc: ENST00000380774.3:c.858-45_857+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346938
  ensembl transcript: ENST00000354868
  gene symbol: RAD17
  hgvsc: ENST00000354868.5:c.825-45_824+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000355226
  ensembl transcript: ENST00000361732
  gene symbol: RAD17
  hgvsc: ENST00000361732.2:c.825-45_824+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000303134
  ensembl transcript: ENST00000305138
  gene symbol: RAD17
  hgvsc: ENST00000305138.4:c.825-45_824+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000514626
  gene symbol: RAD17
  hgvsc: ENST00000514626.1:n.435-45_434+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000424289
  ensembl transcript: ENST00000508320
  gene symbol: RAD17
  hgvsc: ENST00000508320.1:c.84-45_83+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl transcript: ENST00000504177
  gene symbol: RAD17
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000346271
  ensembl transcript: ENST00000354312
  gene symbol: RAD17
  hgvsc: ENST00000354312.3:c.825-45_824+42delATATT
  variant of: http://identifiers.org/hgnc/9807
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000152942
  ensembl protein: ENSP00000350725
  ensembl transcript: ENST00000358030
  gene symbol: RAD17
  hgvsc: ENST00000358030.2:c.330-45_329+42delATATT
  variant of: http://identifiers.org/hgnc/9807
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6982
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
reference allele: CATATT

GenotypeDepth
all individuals: 786
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 806
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4508
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2175
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2207
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4448
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3287
bin: 1.25e1
variant carriers: 5

GenotypeQuality
all individuals: 6669
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 358
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15020
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 3623
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 1056
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2762
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4059
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5209
bin: 3.25e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.012531328320802e-4
allele num: 3990
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.185727938834024e-4
allele num: 6278
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.88040616773223e-4
allele num: 5318
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 5.765682656826568e-4
allele num: 8672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 2.833444953892123e-4
allele num: 38822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.7e-1

FS
type: SiteQuality
SIO_000300: 1.5624e1

MQ
type: SiteQuality
SIO_000300: 5.827e1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e0

VQSLOD
type: SiteQuality
SIO_000300: -8.844e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.69e-2

DP
type: SiteQuality
SIO_000300: 1.642585e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.81e-1

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 4.75e1
variant carriers: 247

GenotypeQuality
all individuals: 1576
bin: 2.75e1
variant carriers: 366

GenotypeQuality
all individuals: 1582
bin: 3.75e1
variant carriers: 318

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 323

GenotypeQuality
all individuals: 2120
bin: 7.5e0
variant carriers: 296

GenotypeQuality
all individuals: 1510
bin: 8.25e1
variant carriers: 28

GenotypeQuality
all individuals: 1789
bin: 4.25e1
variant carriers: 338

GenotypeQuality
all individuals: 1930
bin: 6.25e1
variant carriers: 103

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 65

GenotypeQuality
all individuals: 2001
bin: 5.25e1
variant carriers: 190

GenotypeQuality
all individuals: 1548
bin: 1.75e1
variant carriers: 302

GenotypeQuality
all individuals: 1767
bin: 2.25e1
variant carriers: 418

GenotypeQuality
all individuals: 1857
bin: 5.75e1
variant carriers: 149

GenotypeQuality
all individuals: 23995
bin: 2.5e0
variant carriers: 276

GenotypeQuality
all individuals: 1706
bin: 7.75e1
variant carriers: 39

GenotypeQuality
all individuals: 1609
bin: 1.25e1
variant carriers: 285

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 24

GenotypeQuality
all individuals: 6044
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 1054
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1884
bin: 6.75e1
variant carriers: 85

European (Non-Finnish)
type: Population
allele count: 974
allele frequency: 3.353763514909441e-2
allele num: 29042
num of homozygotes: 0

African
type: Population
allele count: 184
allele frequency: 4.507594316511514e-2
allele num: 4082
num of homozygotes: 0

East Asian
type: Population
allele count: 89
allele frequency: 2.976588628762542e-2
allele num: 2990
num of homozygotes: 0

South Asian
type: Population
allele count: 276
allele frequency: 4.460245636716225e-2
allele num: 6188
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 2.696078431372549e-2
allele num: 408
num of homozygotes: 0

Latino
type: Population
allele count: 240
allele frequency: 4.449388209121246e-2
allele num: 5394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 84
allele frequency: 2.179553710430721e-2
allele num: 3854
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.851e1

FS
type: SiteQuality
SIO_000300: 6.124e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

DP
type: SiteQuality
SIO_000300: 1.028546e6

GenotypeDepth
all individuals: 4927
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23995
bin: 2.5e0
variant carriers: 19

GenotypeQuality
all individuals: 1548
bin: 1.75e1
variant carriers: 32

GenotypeQuality
all individuals: 1582
bin: 3.75e1
variant carriers: 25

GenotypeQuality
all individuals: 2120
bin: 7.5e0
variant carriers: 34

GenotypeQuality
all individuals: 1706
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1609
bin: 1.25e1
variant carriers: 33

GenotypeQuality
all individuals: 2001
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1857
bin: 5.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1510
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1884
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1789
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1576
bin: 2.75e1
variant carriers: 18

GenotypeQuality
all individuals: 6044
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1767
bin: 2.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1054
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1838
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1930
bin: 6.25e1
variant carriers: 4

South Asian
type: Population
allele count: 14
allele frequency: 2.262443438914027e-3
allele num: 6188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 41
allele frequency: 1.411748502169272e-3
allele num: 29042
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.672240802675585e-3
allele num: 2990
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 1.297738227660363e-3
allele num: 5394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 5.189413596263622e-4
allele num: 3854
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.959823615874571e-3
allele num: 4082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

DP
type: SiteQuality
SIO_000300: 1.028546e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 6.124e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

European (Non-Finnish)
type: Population
allele count: 38
allele frequency: 1.308449831278838e-3
allele num: 29042
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 7.415647015202076e-4
allele num: 5394
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.131221719457014e-3
allele num: 6188
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.124e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 4.74e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.028546e6

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

GenotypeDepth
all individuals: 410
bin: 4.25e1
variant carriers: 151

GenotypeQuality
all individuals: 1767
bin: 2.25e1
variant carriers: 833

GenotypeQuality
all individuals: 1576
bin: 2.75e1
variant carriers: 960

GenotypeQuality
all individuals: 1884
bin: 6.75e1
variant carriers: 1661

GenotypeQuality
all individuals: 2120
bin: 7.5e0
variant carriers: 797

GenotypeQuality
all individuals: 1510
bin: 8.25e1
variant carriers: 1320

GenotypeQuality
all individuals: 1789
bin: 4.25e1
variant carriers: 1374

GenotypeQuality
all individuals: 2001
bin: 5.25e1
variant carriers: 1725

GenotypeQuality
all individuals: 1548
bin: 1.75e1
variant carriers: 868

GenotypeQuality
all individuals: 1582
bin: 3.75e1
variant carriers: 1105

GenotypeQuality
all individuals: 1930
bin: 6.25e1
variant carriers: 1725

GenotypeQuality
all individuals: 1609
bin: 1.25e1
variant carriers: 767

GenotypeQuality
all individuals: 23995
bin: 2.5e0
variant carriers: 663

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 1472

GenotypeQuality
all individuals: 1838
bin: 4.75e1
variant carriers: 1533

GenotypeQuality
all individuals: 1706
bin: 7.75e1
variant carriers: 1472

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 1101

GenotypeQuality
all individuals: 6044
bin: 9.75e1
variant carriers: 5342

GenotypeQuality
all individuals: 1054
bin: 9.25e1
variant carriers: 940

GenotypeQuality
all individuals: 1857
bin: 5.75e1
variant carriers: 1611

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 965

African
type: Population
allele count: 1644
allele frequency: 4.027437530622244e-1
allele num: 4082
num of homozygotes: 1

East Asian
type: Population
allele count: 1231
allele frequency: 4.117056856187291e-1
allele num: 2990
num of homozygotes: 0

South Asian
type: Population
allele count: 2499
allele frequency: 4.038461538461539e-1
allele num: 6188
num of homozygotes: 1

Other
type: Population
allele count: 171
allele frequency: 4.191176470588235e-1
allele num: 408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1722
allele frequency: 4.468085106382979e-1
allele num: 3854
num of homozygotes: 0

Latino
type: Population
allele count: 2244
allele frequency: 4.160177975528365e-1
allele num: 5394
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 11911
allele frequency: 4.10130156325322e-1
allele num: 29042
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 1.028546e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

FS
type: SiteQuality
SIO_000300: 6.124e0

QD
type: SiteQuality
SIO_000300: 4.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

GenotypeDepth
all individuals: 9
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1518
bin: 3.25e1
variant carriers: 136

GenotypeQuality
all individuals: 1054
bin: 9.25e1
variant carriers: 95

GenotypeQuality
all individuals: 1706
bin: 7.75e1
variant carriers: 193

GenotypeQuality
all individuals: 1767
bin: 2.25e1
variant carriers: 142

GenotypeQuality
all individuals: 1576
bin: 2.75e1
variant carriers: 145

GenotypeQuality
all individuals: 1857
bin: 5.75e1
variant carriers: 96

GenotypeQuality
all individuals: 1838
bin: 4.75e1
variant carriers: 94

GenotypeQuality
all individuals: 23995
bin: 2.5e0
variant carriers: 196

GenotypeQuality
all individuals: 1930
bin: 6.25e1
variant carriers: 114

GenotypeQuality
all individuals: 1884
bin: 6.75e1
variant carriers: 152

GenotypeQuality
all individuals: 2001
bin: 5.25e1
variant carriers: 93

GenotypeQuality
all individuals: 1582
bin: 3.75e1
variant carriers: 99

GenotypeQuality
all individuals: 1222
bin: 8.75e1
variant carriers: 97

GenotypeQuality
all individuals: 1609
bin: 1.25e1
variant carriers: 202

GenotypeQuality
all individuals: 2120
bin: 7.5e0
variant carriers: 220

GenotypeQuality
all individuals: 1789
bin: 4.25e1
variant carriers: 114

GenotypeQuality
all individuals: 1698
bin: 7.25e1
variant carriers: 169

GenotypeQuality
all individuals: 1548
bin: 1.75e1
variant carriers: 161

GenotypeQuality
all individuals: 1510
bin: 8.25e1
variant carriers: 173

GenotypeQuality
all individuals: 6044
bin: 9.75e1
variant carriers: 624

South Asian
type: Population
allele count: 281
allele frequency: 4.541047188106011e-2
allele num: 6188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1179
allele frequency: 4.059637765994078e-2
allele num: 29042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 116
allele frequency: 3.009859885832901e-2
allele num: 3854
num of homozygotes: 0

Latino
type: Population
allele count: 210
allele frequency: 3.89321468298109e-2
allele num: 5394
num of homozygotes: 0

East Asian
type: Population
allele count: 150
allele frequency: 5.016722408026756e-2
allele num: 2990
num of homozygotes: 0

Other
type: Population
allele count: 15
allele frequency: 3.676470588235294e-2
allele num: 408
num of homozygotes: 0

African
type: Population
allele count: 158
allele frequency: 3.870651641352278e-2
allele num: 4082
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.124e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

DP
type: SiteQuality
SIO_000300: 1.028546e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

African
type: Population
allele count: 6
allele frequency: 1.469867711905928e-3
allele num: 4082
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 2.341137123745819e-3
allele num: 2990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 2.100406308105502e-3
allele num: 29042
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
type: SiteQuality
SIO_000300: 4.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 6.124e0

MQ
type: SiteQuality
SIO_000300: 5.851e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 1.028546e6

GenotypeQuality
all individuals: 847
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 630
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3593
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6691
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14296
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.7327e1

QD
type: SiteQuality
SIO_000300: 9.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.938e0

MQ
type: SiteQuality
SIO_000300: 5.265e1

DP
type: SiteQuality
SIO_000300: 1.07507e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.768e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6691
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7104
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.661260205762823e-5
allele num: 54626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14296
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.768e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.938e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

QD
type: SiteQuality
SIO_000300: 9.1e-1

FS
type: SiteQuality
SIO_000300: 1.7327e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.265e1

DP
type: SiteQuality
SIO_000300: 1.07507e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

GenotypeDepth
all individuals: 47
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2814
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6816
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2673
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1079
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6832
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.199155524278677e-5
allele num: 45472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.216e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 9.52256e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.809e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

MQ
type: SiteQuality
SIO_000300: 5.681e1

GenotypeDepth
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2418
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6501
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 4193
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1505
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1300
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 7094
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6063
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3858
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6885
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 5

GenotypeQuality
all individuals: 364
bin: 9.75e1
variant carriers: 102

GenotypeQuality
all individuals: 16634
bin: 2.25e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37364
num of homozygotes: 0

African
type: Population
allele count: 98
allele frequency: 1.785063752276867e-2
allele num: 5490
num of homozygotes: 4

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 7.070135746606335e-4
allele num: 7072
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.131733816206428e-4
allele num: 8836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4892
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.22621e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 1.386e1

MQRankSum
type: SiteQuality
SIO_000300: 3.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

GenotypeQuality
all individuals: 12575
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3600
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 861
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4798
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2820
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.731972945087699e-5
allele num: 17446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.35138e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.78e-2

GenotypeDepth
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12654
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2842
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4769
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3729
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1298
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 4.45335114673792e-4
allele num: 8982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.063e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.003e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.73e-2

DP
type: SiteQuality
SIO_000300: 5.40059e5

GenotypeDepth
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4727
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2625
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 718
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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DP
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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South Asian
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allele frequency: 1.103509159126021e-4
allele num: 9062
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African
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MQRankSum
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SIO_000300: -1.84e-1

MQ
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BaseQRankSum
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VQSLOD
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FS
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 1.082133968185261e-4
allele num: 18482
num of homozygotes: 0

Latino
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 3.122e0

VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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DP
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MQ
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ClippingRankSum
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SIO_000300: -1.528e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5154
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.560163850486431e-4
allele num: 3906
num of homozygotes: 0

East Asian
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 400
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 1.899696048632219e-4
allele num: 5264
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 32576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Other
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allele num: 542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 6.0e1

FS
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VQSLOD
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QD
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 57310
num of homozygotes: 0

East Asian
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allele frequency: 5.001250312578145e-4
allele num: 7998
num of homozygotes: 0

South Asian
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Latino
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Other
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.575795776867318e-5
allele num: 63460
num of homozygotes: 0

European (Finnish)
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African
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South Asian
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Other
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
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allele count: 8
allele frequency: 9.394081728511038e-4
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.564994209521425e-5
allele num: 63898
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
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VQSLOD
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DP
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QD
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MQ
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SIO_000300: 5.909e1

ClippingRankSum
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SIO_000300: 1.8e-2

InbreedingCoeff
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SIO_000300: -2.0e-4

MQRankSum
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SIO_000300: 5.56e-1

ReadPosRankSum
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SIO_000300: -5.1e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64200
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.03777501037775e-4
allele num: 9636
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.153846153846154e-5
allele num: 16250
num of homozygotes: 0

DP
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SIO_000300: 1.34938e6

BaseQRankSum
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InbreedingCoeff
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SIO_000300: 0.0e0

MQ
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SIO_000300: 5.958e1

VQSLOD
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SIO_000300: 1.11e0

FS
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SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 5.41e-1

ClippingRankSum
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SIO_000300: 5.41e-1

QD
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SIO_000300: 1.34e1

ReadPosRankSum
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SIO_000300: -1.41e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

African
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allele count: 9
allele frequency: 9.286009079653323e-4
allele num: 9692
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64602
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.911e0

VQSLOD
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SIO_000300: 5.21e-1

BaseQRankSum
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SIO_000300: -7.92e-1

MQRankSum
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.025e1

InbreedingCoeff
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SIO_000300: 1.0e-4

MQ
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SIO_000300: 6.0e1

DP
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SIO_000300: 1.353979e6

ClippingRankSum
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SIO_000300: -5.91e-1

ReadPosRankSum
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SIO_000300: 4.12e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.10798924993892e-5
allele num: 16372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 4.0e-4

MQRankSum
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SIO_000300: -4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

FS
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SIO_000300: 1.355e0

MQ
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SIO_000300: 5.973e1

VQSLOD
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SIO_000300: 8.57e-1

BaseQRankSum
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SIO_000300: 7.94e-1

DP
type: SiteQuality
SIO_000300: 1.371817e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

QD
type: SiteQuality
SIO_000300: 1.036e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 978
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.70170553428472e-5
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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QD
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DP
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SIO_000300: 1.371817e6

ClippingRankSum
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SIO_000300: -1.99e-1

ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.514004542013626e-5
allele num: 66050
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
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InbreedingCoeff
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FS
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MQRankSum
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DP
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 2
allele frequency: 2.022653721682848e-4
allele num: 9888
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.647920055775041e-4
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66068
num of homozygotes: 0

BaseQRankSum
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FS
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DP
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MQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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SIO_000300: -2.95e-1

MQ
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.023248783142365e-5
allele num: 66154
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.26725188978298e-4
allele num: 16404
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.906e0

MQRankSum
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SIO_000300: -1.85e-1

ReadPosRankSum
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SIO_000300: 6.06e-1

InbreedingCoeff
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SIO_000300: 3.0e-4

BaseQRankSum
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SIO_000300: -1.617e0

QD
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SIO_000300: 1.062e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.376752e6

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

ClippingRankSum
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SIO_000300: -5.649999999999999e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
all individuals: 48
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
num of homozygotes: 0

BaseQRankSum
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SIO_000300: 3.74e0

FS
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SIO_000300: 1.476e0

ReadPosRankSum
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SIO_000300: -1.114e0

InbreedingCoeff
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ClippingRankSum
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QD
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MQRankSum
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SIO_000300: 8.22e-1

VQSLOD
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SIO_000300: -1.805e0

DP
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SIO_000300: 1.377277e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507613447911955e-5
allele num: 66330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: 8.0e-2

InbreedingCoeff
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SIO_000300: 8.3e-3

ReadPosRankSum
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SIO_000300: 2.72e0

ClippingRankSum
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SIO_000300: -7.68e-1

MQ
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SIO_000300: 5.981e1

FS
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SIO_000300: 1.8651e1

QD
type: SiteQuality
SIO_000300: 1.188e1

VQSLOD
type: SiteQuality
SIO_000300: -3.965e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.236e0

DP
type: SiteQuality
SIO_000300: 1.380371e6

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 678
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01295570955107e-5
allele num: 66380
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
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SIO_000300: 7.09e0

VQSLOD
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SIO_000300: -1.953e0

DP
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SIO_000300: 1.381387e6

QD
type: SiteQuality
SIO_000300: 1.961e1

FS
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SIO_000300: 1.1994e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52521
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 718
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GenotypeQuality
all individuals: 394
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10028
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

MQRankSum
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SIO_000300: -7.22e-1

BaseQRankSum
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SIO_000300: 7.91e-1

InbreedingCoeff
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DP
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FS
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QD
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ClippingRankSum
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ReadPosRankSum
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SIO_000300: 9.55e-1

VQSLOD
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MQ
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SIO_000300: 6.066e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
all individuals: 124
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GenotypeQuality
all individuals: 394
bin: 8.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.64902266043937e-5
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.956947162426615e-4
allele num: 66430
num of homozygotes: 0

East Asian
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.505162708088744e-5
allele num: 66438
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Other
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East Asian
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Latino
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ClippingRankSum
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MQRankSum
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VQSLOD
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QD
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 9.964129135113592e-5
allele num: 10036
num of homozygotes: 0

South Asian
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DP
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QD
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FS
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VQSLOD
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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SIO_000300: 6.0e-3

MQ
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SIO_000300: 5.974e1

BaseQRankSum
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SIO_000300: 5.13e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 6.0960741282614e-5
allele num: 16404
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 4.04e0

ClippingRankSum
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DP
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FS
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 8.8e-1

InbreedingCoeff
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SIO_000300: 1.8e-3

QD
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SIO_000300: 1.301e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

Latino
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allele frequency: 7.778738115816768e-4
allele num: 11570
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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ReadPosRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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QD
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DP
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

African
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QD
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BaseQRankSum
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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FS
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SIO_000300: 9.51e-1

ClippingRankSum
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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QD
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VQSLOD
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

East Asian
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Other
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South Asian
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European (Non-Finnish)
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FS
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

South Asian
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Latino
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
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allele num: 66584
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South Asian
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East Asian
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African
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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FS
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DP
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MQRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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FS
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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Other
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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European (Non-Finnish)
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allele num: 66630
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ReadPosRankSum
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SIO_000300: -1.197e0

BaseQRankSum
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FS
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DP
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MQ
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 31

South Asian
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num of homozygotes: 0

Other
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Latino
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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FS
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VQSLOD
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DP
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MQRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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MQ
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DP
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VQSLOD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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South Asian
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FS
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.968102073365231e-5
allele num: 10032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
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SIO_000300: 1.08e0

QD
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SIO_000300: 1.124e1

MQRankSum
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SIO_000300: 6.77e-1

ClippingRankSum
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SIO_000300: -2.95e-1

FS
type: SiteQuality
SIO_000300: 1.739e0

ReadPosRankSum
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SIO_000300: 5.8e-1

BaseQRankSum
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SIO_000300: -2.493e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.391997e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53183
bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502070952638214e-5
allele num: 66636
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

FS
type: SiteQuality
SIO_000300: 1.739e0

ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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BaseQRankSum
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SIO_000300: -2.493e0

DP
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SIO_000300: 1.391997e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213592233009709e-4
allele num: 16480
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.18e-1

BaseQRankSum
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SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 3.226e0

MQRankSum
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SIO_000300: 2.08e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.318e1

DP
type: SiteQuality
SIO_000300: 1.391888e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.347e0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.207e1

ClippingRankSum
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SIO_000300: -6.929999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.733e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.42e-1

FS
type: SiteQuality
SIO_000300: 4.577e0

DP
type: SiteQuality
SIO_000300: 1.391139e6

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.39094e6

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
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bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 6.25e1
variant carriers: 1

GenotypeDepth
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bin: 9.25e1
variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50105073551486e-5
allele num: 66620
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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FS
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VQSLOD
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MQRankSum
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
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allele num: 66620
num of homozygotes: 0

South Asian
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VQSLOD
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BaseQRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

GenotypeDepth
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bin: 1.25e1
variant carriers: 0

GenotypeDepth
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bin: 8.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
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SIO_000300: 2.46e0

DP
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FS
type: SiteQuality
SIO_000300: 5.679999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.6e-2

InbreedingCoeff
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SIO_000300: 2.0e-4

BaseQRankSum
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SIO_000300: 8.110000000000001e-1

QD
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MQ
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SIO_000300: 5.967e1

ClippingRankSum
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SIO_000300: -1.631e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.643042350907519e-5
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

South Asian
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allele count: 0
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MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQ
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SIO_000300: 5.965e1

ReadPosRankSum
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SIO_000300: 1.06e0

FS
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SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: 3.69e0

QD
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ClippingRankSum
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SIO_000300: 1.21e-1

InbreedingCoeff
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SIO_000300: -3.0e-4

DP
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SIO_000300: 1.387185e6

VQSLOD
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SIO_000300: 2.62e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510802235987309e-5
allele num: 66190
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 1.0499e1

ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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MQ
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SIO_000300: 5.961e1

InbreedingCoeff
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SIO_000300: 4.0e-3

DP
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SIO_000300: 1.373358e6

VQSLOD
type: SiteQuality
SIO_000300: -3.805e-1

ClippingRankSum
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SIO_000300: -1.314e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511121856866538e-5
allele num: 66176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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MQ
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FS
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

QD
type: SiteQuality
SIO_000300: 7.9e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.144015728680265e-5
allele num: 16276
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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QD
type: SiteQuality
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DP
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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East Asian
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South Asian
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Other
type: Population
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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FS
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.361508e6

FS
type: SiteQuality
SIO_000300: 2.5771e1

MQ
type: SiteQuality
SIO_000300: 5.102e1

VQSLOD
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BaseQRankSum
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SIO_000300: -1.071e0

MQRankSum
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SIO_000300: -2.219e0

QD
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ClippingRankSum
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SIO_000300: 4.41e-1

InbreedingCoeff
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SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65970
num of homozygotes: 0

Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
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SIO_000300: -1.926e0

VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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FS
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SIO_000300: 1.3736e1

ClippingRankSum
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SIO_000300: -4.33e-1

MQ
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SIO_000300: 5.224e1

QD
type: SiteQuality
SIO_000300: 7.0e-1

ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 65908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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VQSLOD
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QD
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SIO_000300: 1.719e1

InbreedingCoeff
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MQRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.78e-1

BaseQRankSum
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SIO_000300: -1.107e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.358987e6

GenotypeDepth
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bin: 6.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65888
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.357094e6

BaseQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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QD
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MQRankSum
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SIO_000300: -2.658e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.66e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
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allele count: 0
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num of homozygotes: 0

South Asian
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East Asian
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Other
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.527697149317119e-5
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0