6-31609042-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609042
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609042
    reference: chr 6
allele count: 1
allele frequency: 8.273351534706709e-6
allele num: 120870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2663-37C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2555-37C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2573-37C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2555-37C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2177-37C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2555-37C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.532C>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

6-31609056-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609056
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609056
    reference: chr 6
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+41A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+41A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+41A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+41A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.518A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+41A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+41A>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

6-31609058-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609058
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609058
    reference: chr 6
allele count: 1
allele frequency: 8.266239026567692e-6
allele num: 120974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+39G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+39G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+39G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+39G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.516G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+39G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+39G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

6-31609065-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609065
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609065
    reference: chr 6
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+32G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.509G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+32G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+32G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+32G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+32G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+32G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5260
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

6-31609078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609078
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609078
    reference: chr 6
allele count: 3
allele frequency: 2.477741621103751e-5
allele num: 121078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.496G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+19G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5609
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-31609079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609079
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609079
    reference: chr 6
allele count: 1
allele frequency: 8.259957378619926e-6
allele num: 121066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+18C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.495C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+18C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+18C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+18C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+18C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+18C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5611
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

6-31609088-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609088
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609088
    reference: chr 6
allele count: 2
allele frequency: 1.650655310158133e-5
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+9C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+9C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.486C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+9C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+9C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+9C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+9C>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5001
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5257
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31609089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609089
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609089
    reference: chr 6
allele count: 2
allele frequency: 1.650600818698006e-5
allele num: 121168
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+8G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.485G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+8G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+8G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+8G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+8G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+8G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2252
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5002
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47308
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.75e1
  variant carriers: 0
hgvs: c.2572+8G>A
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

6-31609091-CCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609091
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609089
    reference: chr 6
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.481_482delAG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2554+4_2554+5delAG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2662+4_2662+5delAG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2554+4_2554+5delAG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2554+4_2554+5delAG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2572+4_2572+5delAG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2176+4_2176+5delAG
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4814
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 7.75e1
  variant carriers: 0
hgvs: c.2572+4_2572+5delAG
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: CCT
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

6-31609101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609101
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609101
    reference: chr 6
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2172C>T
  hgvsp: ENST00000439687.2:c.2172C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2550C>T
  hgvsp: ENST00000211379.5:c.2550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2550C>T
  hgvsp: ENST00000375976.4:c.2550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2658C>T
  hgvsp: ENST00000404765.2:c.2658C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2550C>T
  hgvsp: ENST00000362049.6:c.2550C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.473C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2568C>T
  hgvsp: ENST00000375964.6:c.2568C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47320
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Cys856Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/6-31609107-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609107
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609107
    reference: chr 6
allele count: 1
allele frequency: 8.249191579225235e-6
allele num: 121224
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.467G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2544G>T
  hgvsp: ENST00000375976.4:c.2544G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2544G>T
  hgvsp: ENST00000362049.6:c.2544G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2544G>T
  hgvsp: ENST00000211379.5:c.2544G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2562G>T
  hgvsp: ENST00000375964.6:c.2562G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2652G>T
  hgvsp: ENST00000404765.2:c.2652G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2166G>T
  hgvsp: ENST00000439687.2:c.2166G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu854Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

6-31609113-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609113
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609113
    reference: chr 6
allele count: 1
allele frequency: 8.247558722618106e-6
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2160T>C
  hgvsp: ENST00000439687.2:c.2160T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2538T>C
  hgvsp: ENST00000211379.5:c.2538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2538T>C
  hgvsp: ENST00000362049.6:c.2538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.461T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2556T>C
  hgvsp: ENST00000375964.6:c.2556T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2538T>C
  hgvsp: ENST00000375976.4:c.2538T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2646T>C
  hgvsp: ENST00000404765.2:c.2646T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.His852His
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

6-31609116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609116
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609116
    reference: chr 6
allele count: 49
allele frequency: 4.041370436962869e-4
allele num: 121246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2643G>A
  hgvsp: ENST00000404765.2:c.2643G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2535G>A
  hgvsp: ENST00000375976.4:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2535G>A
  hgvsp: ENST00000211379.5:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2553G>A
  hgvsp: ENST00000375964.6:c.2553G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.458G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2535G>A
  hgvsp: ENST00000362049.6:c.2535G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2157G>A
  hgvsp: ENST00000439687.2:c.2157G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5809
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2935
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3889
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5258
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47350
  bin: 9.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala851Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

6-31609117-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609117
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609117
    reference: chr 6
allele count: 3
allele frequency: 2.474308430793593e-5
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2534C>T
  hgvsp: ENSP00000365143.4:p.Ala845Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2552C>T
  hgvsp: ENSP00000365131.5:p.Ala851Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2534C>T
  hgvsp: ENSP00000354875.6:p.Ala845Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2156C>T
  hgvsp: ENSP00000402856.2:p.Ala719Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.457C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2534C>T
  hgvsp: ENSP00000211379.5:p.Ala845Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2642C>T
  hgvsp: ENSP00000384494.2:p.Ala881Val
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5606
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5256
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47352
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala851Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

6-31609162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609162
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609162
    reference: chr 6
allele count: 2
allele frequency: 1.648587160803192e-5
allele num: 121316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.412G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2489G>A
  hgvsp: ENSP00000211379.5:p.Arg830Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2597G>A
  hgvsp: ENSP00000384494.2:p.Arg866Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2111G>A
  hgvsp: ENSP00000402856.2:p.Arg704Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2489G>A
  hgvsp: ENSP00000354875.6:p.Arg830Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2507G>A
  hgvsp: ENSP00000365131.5:p.Arg836Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2489G>A
  hgvsp: ENSP00000365143.4:p.Arg830Gln
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg836Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

6-31609166-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609166
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609166
    reference: chr 6
allele count: 11
allele frequency: 9.064987721062087e-5
allele num: 121346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2485A>G
  hgvsp: ENSP00000354875.6:p.Ile829Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2593A>G
  hgvsp: ENSP00000384494.2:p.Ile865Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2107A>G
  hgvsp: ENSP00000402856.2:p.Ile703Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2485A>G
  hgvsp: ENSP00000211379.5:p.Ile829Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.408A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2485A>G
  hgvsp: ENSP00000365143.4:p.Ile829Val
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2503A>G
  hgvsp: ENSP00000365131.5:p.Ile835Val
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile835Val
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-31609204-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609204
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609204
    reference: chr 6
allele count: 6
allele frequency: 4.943723942455053e-5
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-5C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-5C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-5C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.370C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-5C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-5C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-5C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5813
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47386
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2470-5C>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

6-31609206-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609206
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609206
    reference: chr 6
allele count: 10
allele frequency: 8.238996819747228e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.368C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-7C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-7C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-7C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-7C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-7C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-7C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3074
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 6.75e1
  variant carriers: 0
hgvs: c.2470-7C>T
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

6-31609207-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609207
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609207
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-8T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-8T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-8T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-8T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-8T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.367T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-8T>C
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
hgvs: c.2470-8T>C
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

6-31609208-CAAGAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609208
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609203
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.361_365delATCTT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-14_2470-10delATCTT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-14_2452-10delATCTT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-14_2560-10delATCTT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-14_2452-10delATCTT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-14_2074-10delATCTT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-14_2452-10delATCTT
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4682
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: CAAGAT
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

6-31609213-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609213
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609213
    reference: chr 6
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-14A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-14A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-14A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-14A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.361A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-14A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-14A>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4683
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3073
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4997
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-31609218-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609218
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609218
    reference: chr 6
allele count: 26
allele frequency: 2.142315678454896e-4
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.356G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-19G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-19G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5604
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4891
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

6-31609222-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609222
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609221
    reference: chr 6
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-24delT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.351delT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-24delT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-24delT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-24delT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-24delT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-24delT
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5007
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: GA
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-31609225-CCCAAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609225
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609220
    reference: chr 6
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.344_348delTTTGG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-31_2074-27delTTTGG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-31_2452-27delTTTGG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-31_2470-27delTTTGG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-31_2452-27delTTTGG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-31_2452-27delTTTGG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-31_2560-27delTTTGG
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: CCCAAA
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

6-31609226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609226
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609226
    reference: chr 6
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.348G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-27G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-27G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-27G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-27G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-27G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-27G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5011
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4695
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

6-31609230-A-ATT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609230
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609232
    reference: chr 6
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: ATT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-32_2452-31insAA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-32_2452-31insAA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.343_344insAA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-32_2452-31insAA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-32_2470-31insAA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-32_2074-31insAA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-32_2560-31insAA
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3072
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5607
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3141
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31609231-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609231
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609230
    reference: chr 6
allele count: 526
allele frequency: 4.333926570430426e-3
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-33delA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.342delA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-33delA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-33delA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-33delA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-33delA
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-33delA
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 8.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 9.75e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 9.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47602
  bin: 9.75e1
  variant carriers: 522
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 4
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: AT
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/6-31609233-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609233
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609233
    reference: chr 6
allele count: 1
allele frequency: 8.311170212765958e-6
allele num: 120320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-34G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-34G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.341G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-34G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-34G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-34G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-34G>T
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47082
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

6-31609233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609233
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609233
    reference: chr 6
allele count: 2
allele frequency: 1.662234042553192e-5
allele num: 120320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2452-34G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2074-34G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.341G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2452-34G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2452-34G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2560-34G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2470-34G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5562
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3063
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5783
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4648
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5220
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47082
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

6-31609272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609272
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609272
    reference: chr 6
allele count: 18536
allele frequency: 1.527507663908758e-1
allele num: 121348
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+44A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+44A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+44A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.302A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+44A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+44A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+44A>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 3.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 9.25e1
  variant carriers: 389
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 4.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 5.75e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 6.75e1
  variant carriers: 165
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 8.25e1
  variant carriers: 277
genotype depth: GenotypeDepth
  all individuals: 28804
  bin: 9.75e1
  variant carriers: 14532
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 6.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 5.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 3732
  bin: 7.25e1
  variant carriers: 196
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 8.75e1
  variant carriers: 311
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 58110
  bin: 9.75e1
  variant carriers: 16897
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 1608
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

6-31609275-C-CCAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609275
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609279
    reference: chr 6
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: CCAGA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+37_2469+40dupTCTG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+37_2451+40dupTCTG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+37_2451+40dupTCTG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+37_2559+40dupTCTG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+37_2451+40dupTCTG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+37_2073+40dupTCTG
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.295_298dupTCTG
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20276
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

6-31609278-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609278
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609278
    reference: chr 6
allele count: 4
allele frequency: 3.296250515039143e-5
allele num: 121350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+38C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+38C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.296C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+38C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+38C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+38C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+38C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20276
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4564
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56903
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

6-31609281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609281
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609281
    reference: chr 6
allele count: 165
allele frequency: 1.359680928208847e-3
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+35G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+35G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+35G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+35G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+35G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.293G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+35G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20287
  bin: 9.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3820
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

6-31609287-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609287
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609287
    reference: chr 6
allele count: 6
allele frequency: 4.944212798918866e-5
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+29C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.287C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+29C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+29C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+29C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+29C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+29C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20199
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-31609290-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609290
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609290
    reference: chr 6
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+26C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+26C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.284C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+26C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+26C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+26C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+26C>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20194
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3711
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-31609300-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609300
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609300
    reference: chr 6
allele count: 49
allele frequency: 4.037840332256576e-4
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+16C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+16C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+16C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.274C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+16C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+16C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+16C>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20193
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56882
  bin: 9.75e1
  variant carriers: 48
num of homozygotes: 1
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

6-31609302-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609302
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609302
    reference: chr 6
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.272C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+14C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+14C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+14C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+14C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+14C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+14C>A
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/6-31609303-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609303
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609303
    reference: chr 6
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+13T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+13T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+13T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.271T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+13T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+13T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+13T>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

6-31609305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609305
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609305
    reference: chr 6
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+11C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+11C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.269C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+11C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+11C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+11C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+11C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20155
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-31609306-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609306
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609306
    reference: chr 6
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+10C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+10C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+10C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+10C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.268C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+10C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+10C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

6-31609306-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609306
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609306
    reference: chr 6
allele count: 3
allele frequency: 2.472106399459433e-5
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2073+10C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2451+10C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2469+10C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.268C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2451+10C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2451+10C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2559+10C>G
  variant of: http://identifiers.org/hgnc/13919
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20154
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

6-31609319-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609319
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609319
    reference: chr 6
allele count: 2
allele frequency: 1.648070932972955e-5
allele num: 121354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2448T>C
  hgvsp: ENST00000362049.6:c.2448T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2466T>C
  hgvsp: ENST00000375964.6:c.2466T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2448T>C
  hgvsp: ENST00000211379.5:c.2448T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.255T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2556T>C
  hgvsp: ENST00000404765.2:c.2556T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2448T>C
  hgvsp: ENST00000375976.4:c.2448T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2070T>C
  hgvsp: ENST00000439687.2:c.2070T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56880
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ser822Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

6-31609326-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609326
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609326
    reference: chr 6
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2459G>A
  hgvsp: ENSP00000365131.5:p.Arg820Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.248G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2549G>A
  hgvsp: ENSP00000384494.2:p.Arg850Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2441G>A
  hgvsp: ENSP00000365143.4:p.Arg814Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2063G>A
  hgvsp: ENSP00000402856.2:p.Arg688Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2441G>A
  hgvsp: ENSP00000211379.5:p.Arg814Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2441G>A
  hgvsp: ENSP00000354875.6:p.Arg814Gln
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg820Gln
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

6-31609327-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609327
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609327
    reference: chr 6
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2440C>A
  hgvsp: ENST00000362049.6:c.2440C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2440C>A
  hgvsp: ENST00000375976.4:c.2440C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2062C>A
  hgvsp: ENST00000439687.2:c.2062C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2458C>A
  hgvsp: ENST00000375964.6:c.2458C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2548C>A
  hgvsp: ENST00000404765.2:c.2548C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2440C>A
  hgvsp: ENST00000211379.5:c.2440C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.247C>A
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg820Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/6-31609334-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609334
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609334
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2433G>T
  hgvsp: ENSP00000354875.6:p.Glu811Asp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2541G>T
  hgvsp: ENSP00000384494.2:p.Glu847Asp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.240G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2055G>T
  hgvsp: ENSP00000402856.2:p.Glu685Asp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2433G>T
  hgvsp: ENSP00000211379.5:p.Glu811Asp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2433G>T
  hgvsp: ENSP00000365143.4:p.Glu811Asp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2451G>T
  hgvsp: ENSP00000365131.5:p.Glu817Asp
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu817Asp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

6-31609334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609334
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609334
    reference: chr 6
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2433G>A
  hgvsp: ENST00000375976.4:c.2433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2541G>A
  hgvsp: ENST00000404765.2:c.2541G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2433G>A
  hgvsp: ENST00000211379.5:c.2433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.240G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2451G>A
  hgvsp: ENST00000375964.6:c.2451G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2433G>A
  hgvsp: ENST00000362049.6:c.2433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2055G>A
  hgvsp: ENST00000439687.2:c.2055G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20149
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu817Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-31609344-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609344
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609344
    reference: chr 6
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2441G>A
  hgvsp: ENSP00000365131.5:p.Gly814Glu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2045G>A
  hgvsp: ENSP00000402856.2:p.Gly682Glu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2423G>A
  hgvsp: ENSP00000354875.6:p.Gly808Glu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.230G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2423G>A
  hgvsp: ENSP00000365143.4:p.Gly808Glu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2423G>A
  hgvsp: ENSP00000211379.5:p.Gly808Glu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2531G>A
  hgvsp: ENSP00000384494.2:p.Gly844Glu
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly814Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

6-31609347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609347
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609347
    reference: chr 6
allele count: 3
allele frequency: 2.471780505891077e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2528C>T
  hgvsp: ENSP00000384494.2:p.Thr843Met
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2438C>T
  hgvsp: ENSP00000365131.5:p.Thr813Met
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.227C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2420C>T
  hgvsp: ENSP00000365143.4:p.Thr807Met
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2420C>T
  hgvsp: ENSP00000354875.6:p.Thr807Met
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2420C>T
  hgvsp: ENSP00000211379.5:p.Thr807Met
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2042C>T
  hgvsp: ENSP00000402856.2:p.Thr681Met
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20148
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr813Met
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-31609352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609352
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609352
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.222G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2415G>A
  hgvsp: ENST00000211379.5:c.2415G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2415G>A
  hgvsp: ENST00000375976.4:c.2415G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2415G>A
  hgvsp: ENST00000362049.6:c.2415G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2433G>A
  hgvsp: ENST00000375964.6:c.2433G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2523G>A
  hgvsp: ENST00000404765.2:c.2523G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2037G>A
  hgvsp: ENST00000439687.2:c.2037G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20148
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56881
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu811Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

6-31609354-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609354
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609354
    reference: chr 6
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2413T>C
  hgvsp: ENST00000211379.5:c.2413T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2521T>C
  hgvsp: ENST00000404765.2:c.2521T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.220T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2431T>C
  hgvsp: ENST00000375964.6:c.2431T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2413T>C
  hgvsp: ENST00000375976.4:c.2413T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2413T>C
  hgvsp: ENST00000362049.6:c.2413T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2035T>C
  hgvsp: ENST00000439687.2:c.2035T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20147
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56881
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu811Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-31609378-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609378
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609379
    reference: chr 6
allele count: 4
allele frequency: 3.295272930980509e-5
allele num: 121386
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2416-10dupT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2020-10dupT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.205-10dupT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2398-10dupT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2398-10dupT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2506-10dupT
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2398-10dupT
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20145
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

6-31609378-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609378
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609378
    reference: chr 6
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2398-9C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2506-9C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2416-9C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2398-9C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2398-9C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2020-9C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.205-9C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4807
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/6-31609382-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609382
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609382
    reference: chr 6
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2020-13G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2506-13G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.205-13G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2416-13G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2398-13G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2398-13G>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2398-13G>T
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20142
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-31609389-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609389
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609389
    reference: chr 6
allele count: 7
allele frequency: 5.766442599182813e-5
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2398-20C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2398-20C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2020-20C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2506-20C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2398-20C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2416-20C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.205-20C>G
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20141
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31609400-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609400
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609400
    reference: chr 6
allele count: 31
allele frequency: 2.553710293923817e-4
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2506-31T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.205-31T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2020-31T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2416-31T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2398-31T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2398-31T>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2398-31T>G
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20138
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

6-31609416-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609416
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609416
    reference: chr 6
allele count: 42
allele frequency: 3.460036577529534e-4
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2398-47T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2020-47T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2506-47T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2398-47T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2398-47T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.205-47T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2416-47T>C
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4345
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3823
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20136
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

6-31609502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609502
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609502
    reference: chr 6
allele count: 1
allele frequency: 8.473427331887202e-6
allele num: 118016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2397+51C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2415+51C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.204+51C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2505+51C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2397+51C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2397+51C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2019+51C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6549
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31842
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

6-31609520-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609520
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609520
    reference: chr 6
allele count: 10
allele frequency: 8.537668192063384e-5
allele num: 117128
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2397+33T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2505+33T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2397+33T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2415+33T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2397+33T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2019+33T>C
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.204+33T>C
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5374
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2363
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8285
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2747
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

6-31609531-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609531
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609531
    reference: chr 6
allele count: 1
allele frequency: 8.568539749455898e-6
allele num: 116706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2397+22C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2397+22C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2019+22C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.204+22C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2415+22C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2397+22C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2505+22C>A
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

6-31609541-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609541
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609541
    reference: chr 6
allele count: 1
allele frequency: 8.579272477693891e-6
allele num: 116560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.204+12C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2397+12C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2397+12C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2505+12C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2415+12C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2019+12C>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2397+12C>G
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2355
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

6-31609548-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609548
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609548
    reference: chr 6
allele count: 1
allele frequency: 8.582954252853832e-6
allele num: 116510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2019+5A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.204+5A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2397+5A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2505+5A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2415+5A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2397+5A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2397+5A>G
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31838
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
hgvs: c.2415+5A>G
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

6-31609555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609555
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609555
    reference: chr 6
allele count: 1
allele frequency: 8.586934121041424e-6
allele num: 116456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2395C>T
  hgvsp: ENSP00000354875.6:p.Arg799Trp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2395C>T
  hgvsp: ENSP00000211379.5:p.Arg799Trp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2017C>T
  hgvsp: ENSP00000402856.2:p.Arg673Trp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2413C>T
  hgvsp: ENSP00000365131.5:p.Arg805Trp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2503C>T
  hgvsp: ENSP00000384494.2:p.Arg835Trp
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.202C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2395C>T
  hgvsp: ENSP00000365143.4:p.Arg799Trp
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg805Trp
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

6-31609567-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609567
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609567
    reference: chr 6
allele count: 1
allele frequency: 8.589441858068062e-6
allele num: 116422
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2401C>A
  hgvsp: ENSP00000365131.5:p.Pro801Thr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2383C>A
  hgvsp: ENSP00000354875.6:p.Pro795Thr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2383C>A
  hgvsp: ENSP00000211379.5:p.Pro795Thr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.190C>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2383C>A
  hgvsp: ENSP00000365143.4:p.Pro795Thr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2491C>A
  hgvsp: ENSP00000384494.2:p.Pro831Thr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2005C>A
  hgvsp: ENSP00000402856.2:p.Pro669Thr
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2352
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31841
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro801Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

6-31609569-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609569
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609569
    reference: chr 6
allele count: 1
allele frequency: 8.591508153341238e-6
allele num: 116394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2489C>T
  hgvsp: ENSP00000384494.2:p.Thr830Ile
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2381C>T
  hgvsp: ENSP00000211379.5:p.Thr794Ile
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.2003C>T
  hgvsp: ENSP00000402856.2:p.Thr668Ile
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2399C>T
  hgvsp: ENSP00000365131.5:p.Thr800Ile
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2381C>T
  hgvsp: ENSP00000365143.4:p.Thr794Ile
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.188C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2381C>T
  hgvsp: ENSP00000354875.6:p.Thr794Ile
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9533
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr800Ile
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

6-31609585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609585
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609585
    reference: chr 6
allele count: 1
allele frequency: 8.595643727758772e-6
allele num: 116338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2365G>A
  hgvsp: ENSP00000211379.5:p.Gly789Ser
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2383G>A
  hgvsp: ENSP00000365131.5:p.Gly795Ser
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.172G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2365G>A
  hgvsp: ENSP00000365143.4:p.Gly789Ser
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2365G>A
  hgvsp: ENSP00000354875.6:p.Gly789Ser
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2473G>A
  hgvsp: ENSP00000384494.2:p.Gly825Ser
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1987G>A
  hgvsp: ENSP00000402856.2:p.Gly663Ser
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31839
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly795Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS

6-31609588-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609588
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609588
    reference: chr 6
allele count: 1
allele frequency: 8.595791500481364e-6
allele num: 116336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2362C>T
  hgvsp: ENST00000362049.6:c.2362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2362C>T
  hgvsp: ENST00000211379.5:c.2362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2362C>T
  hgvsp: ENST00000375976.4:c.2362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2380C>T
  hgvsp: ENST00000375964.6:c.2380C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1984C>T
  hgvsp: ENST00000439687.2:c.1984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.169C>T
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2470C>T
  hgvsp: ENST00000404765.2:c.2470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2075
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu794Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

6-31609596-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609596
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609596
    reference: chr 6
allele count: 2
allele frequency: 1.719660882873897e-5
allele num: 116302
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2354A>T
  hgvsp: ENSP00000365143.4:p.Gln785Leu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2462A>T
  hgvsp: ENSP00000384494.2:p.Gln821Leu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1976A>T
  hgvsp: ENSP00000402856.2:p.Gln659Leu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2372A>T
  hgvsp: ENSP00000365131.5:p.Gln791Leu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2354A>T
  hgvsp: ENSP00000354875.6:p.Gln785Leu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2354A>T
  hgvsp: ENSP00000211379.5:p.Gln785Leu
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.161A>T
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln791Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-31609599-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609599
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609598
    reference: chr 6
allele count: 1
allele frequency: 8.599191675982458e-6
allele num: 116290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2350delC
  hgvsp: ENSP00000211379.5:p.His784ThrfsTer22
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2368delC
  hgvsp: ENSP00000365131.5:p.His790ThrfsTer22
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2350delC
  hgvsp: ENSP00000365143.4:p.His784ThrfsTer22
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1972delC
  hgvsp: ENSP00000402856.2:p.His658ThrfsTer22
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2458delC
  hgvsp: ENSP00000384494.2:p.His820ThrfsTer22
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2350delC
  hgvsp: ENSP00000354875.6:p.His784ThrfsTer22
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.157delC
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2841
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2907
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His790ThrfsTer22
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: TG
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31609600-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609600
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609600
    reference: chr 6
allele count: 1
allele frequency: 8.599191675982458e-6
allele num: 116290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2458C>T
  hgvsp: ENSP00000384494.2:p.His820Tyr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2368C>T
  hgvsp: ENSP00000365131.5:p.His790Tyr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2350C>T
  hgvsp: ENSP00000365143.4:p.His784Tyr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2350C>T
  hgvsp: ENSP00000354875.6:p.His784Tyr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1972C>T
  hgvsp: ENSP00000402856.2:p.His658Tyr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2350C>T
  hgvsp: ENSP00000211379.5:p.His784Tyr
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.157C>T
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9782
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His790Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-31609611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609611
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609611
    reference: chr 6
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2339G>A
  hgvsp: ENSP00000354875.6:p.Arg780Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1961G>A
  hgvsp: ENSP00000402856.2:p.Arg654Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.146G>A
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2339G>A
  hgvsp: ENSP00000365143.4:p.Arg780Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2339G>A
  hgvsp: ENSP00000211379.5:p.Arg780Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2357G>A
  hgvsp: ENSP00000365131.5:p.Arg786Gln
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2447G>A
  hgvsp: ENSP00000384494.2:p.Arg816Gln
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg786Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum

6-31609622-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609622
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609622
    reference: chr 6
allele count: 1
allele frequency: 8.60303859323113e-6
allele num: 116238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2328G>A
  hgvsp: ENST00000362049.6:c.2328G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2328G>A
  hgvsp: ENST00000375976.4:c.2328G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2436G>A
  hgvsp: ENST00000404765.2:c.2436G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2346G>A
  hgvsp: ENST00000375964.6:c.2346G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2328G>A
  hgvsp: ENST00000211379.5:c.2328G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1950G>A
  hgvsp: ENST00000439687.2:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.135G>A
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2998
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31838
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3652
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln782Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

6-31609631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31609631
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31609631
    reference: chr 6
allele count: 2
allele frequency: 1.720963050923297e-5
allele num: 116214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365143
  ensembl transcript: ENST00000375976
  gene symbol: BAG6
  hgvsc: ENST00000375976.4:c.2319A>G
  hgvsp: ENST00000375976.4:c.2319A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000470875
  gene symbol: BAG6
  hgvsc: ENST00000470875.1:n.994A>G
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000354875
  ensembl transcript: ENST00000362049
  gene symbol: BAG6
  hgvsc: ENST00000362049.6:c.2319A>G
  hgvsp: ENST00000362049.6:c.2319A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000211379
  ensembl transcript: ENST00000211379
  gene symbol: BAG6
  hgvsc: ENST00000211379.5:c.2319A>G
  hgvsp: ENST00000211379.5:c.2319A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000365131
  ensembl transcript: ENST00000375964
  gene symbol: BAG6
  hgvsc: ENST00000375964.6:c.2337A>G
  hgvsp: ENST00000375964.6:c.2337A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000402856
  ensembl transcript: ENST00000439687
  gene symbol: BAG6
  hgvsc: ENST00000439687.2:c.1941A>G
  hgvsp: ENST00000439687.2:c.1941A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204463
  ensembl protein: ENSP00000384494
  ensembl transcript: ENST00000404765
  gene symbol: BAG6
  hgvsc: ENST00000404765.2:c.2427A>G
  hgvsp: ENST00000404765.2:c.2427A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13919
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204463
  ensembl transcript: ENST00000462875
  gene symbol: BAG6
  hgvsc: ENST00000462875.1:n.126A>G
  variant of: http://identifiers.org/hgnc/13919
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln779Gln
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-2

MQ
type: SiteQuality
SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.778e0

FS
type: SiteQuality
SIO_000300: 1.051e0

QD
type: SiteQuality
SIO_000300: 1.07e1

DP
type: SiteQuality
SIO_000300: 3.706202e6

GenotypeQuality
all individuals: 1023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
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GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 3.705554e6

VQSLOD
type: SiteQuality
SIO_000300: -1.255e0

FS
type: SiteQuality
SIO_000300: 9.856999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.918e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

QD
type: SiteQuality
SIO_000300: 1.718e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 212
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4401
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.139e0

QD
type: SiteQuality
SIO_000300: 1.091e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.975e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 3.705023e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-2

GenotypeQuality
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
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variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1177
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variant carriers: 0

GenotypeQuality
all individuals: 1706
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variant carriers: 0

GenotypeQuality
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 1054
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variant carriers: 0

GenotypeQuality
all individuals: 47270
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.143e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.11e-1

DP
type: SiteQuality
SIO_000300: 3.703733e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.864e0

FS
type: SiteQuality
SIO_000300: 7.773e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.034e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47275
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4438
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004988280545706e-5
allele num: 66556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.078288353999514e-5
allele num: 16452
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.704693e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.366e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

FS
type: SiteQuality
SIO_000300: 8.827999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.293e0

VQSLOD
type: SiteQuality
SIO_000300: -2.86e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.79e-1

GenotypeQuality
all individuals: 409
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 47279
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variant carriers: 1

GenotypeQuality
all individuals: 252
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GenotypeQuality
all individuals: 123
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variant carriers: 0

GenotypeQuality
all individuals: 786
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variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.095e0

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.167e0

QD
type: SiteQuality
SIO_000300: 1.195e1

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.49e-1

DP
type: SiteQuality
SIO_000300: 3.704879e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 47305
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1825
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GenotypeQuality
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GenotypeQuality
all individuals: 187
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variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00318337437684e-5
allele num: 66596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.708303e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.324e0

MQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: -1.456e0

FS
type: SiteQuality
SIO_000300: 1.1946e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.468e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-1

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002462018855461e-5
allele num: 66612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.17e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.193e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.708771e6

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 47311
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GenotypeQuality
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GenotypeQuality
all individuals: 171
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variant carriers: 0

GenotypeQuality
all individuals: 96
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GenotypeQuality
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GenotypeQuality
all individuals: 95
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GenotypeQuality
all individuals: 802
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.709542e6

FS
type: SiteQuality
SIO_000300: 2.198e0

MQRankSum
type: SiteQuality
SIO_000300: -7.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.961e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 2.092e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 1222
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1215
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.646922631680494e-5
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e-1

FS
type: SiteQuality
SIO_000300: 6.184e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e0

DP
type: SiteQuality
SIO_000300: 3.712812e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66626
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.337e0

FS
type: SiteQuality
SIO_000300: 5.852e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 6.97e0

DP
type: SiteQuality
SIO_000300: 3.714857e6

VQSLOD
type: SiteQuality
SIO_000300: -2.826e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 1218
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.640000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.389e0

MQRankSum
type: SiteQuality
SIO_000300: -3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.598e-1

DP
type: SiteQuality
SIO_000300: 3.716158e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

FS
type: SiteQuality
SIO_000300: 1.855e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 33
allele frequency: 4.952129415648729e-4
allele num: 66638
num of homozygotes: 0

Latino
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allele count: 13
allele frequency: 1.123401313515382e-3
allele num: 11572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.86e-2

FS
type: SiteQuality
SIO_000300: 5.23e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 3.717098e6

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592464569650881e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.178e1

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

FS
type: SiteQuality
SIO_000300: 4.937e0

MQRankSum
type: SiteQuality
SIO_000300: -4.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.12e-1

DP
type: SiteQuality
SIO_000300: 3.717281e6

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 3.721092e6

FS
type: SiteQuality
SIO_000300: 1.339e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.62278675904542e-4
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.41e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

QD
type: SiteQuality
SIO_000300: 1.252e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423654871546292e-4
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997781641585227e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.296e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.75e-1

FS
type: SiteQuality
SIO_000300: 1.757e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.1e-1

QD
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 8.28e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
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allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 10
allele frequency: 9.617234083477592e-4
allele num: 10398
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 2.482e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.401e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.95e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e0

DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.96e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4963
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1210
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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DP
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QD
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InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 1.1276e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10398
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Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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FS
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SIO_000300: 1.944e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.91e0

MQ
type: SiteQuality
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ReadPosRankSum
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DP
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SIO_000300: 3.723247e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 26

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.597122302158273e-4
allele num: 66720
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10394
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
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SIO_000300: -5.0e-4

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.026e0

DP
type: SiteQuality
SIO_000300: 3.724809e6

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.823e0

MQ
type: SiteQuality
SIO_000300: 5.615e1

FS
type: SiteQuality
SIO_000300: 5.772e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 3.725288e6

VQSLOD
type: SiteQuality
SIO_000300: -4.519e-1

QD
type: SiteQuality
SIO_000300: 9.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.973e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 4.199e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.074e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.604e0

MQRankSum
type: SiteQuality
SIO_000300: -7.109e0

MQ
type: SiteQuality
SIO_000300: 5.505e1

QD
type: SiteQuality
SIO_000300: 4.46e0

VQSLOD
type: SiteQuality
SIO_000300: -2.059e0

DP
type: SiteQuality
SIO_000300: 3.725591e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.776e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

QD
type: SiteQuality
SIO_000300: 1.719e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 1
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allele num: 8654
num of homozygotes: 0

Other
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num of homozygotes: 0

InbreedingCoeff
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 351
allele frequency: 3.375649163300635e-2
allele num: 10398
num of homozygotes: 4

East Asian
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South Asian
type: Population
allele count: 6
allele frequency: 3.636363636363636e-4
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-4
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.303964757709251e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 149
allele frequency: 2.233213429256595e-3
allele num: 66720
num of homozygotes: 0

Latino
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allele count: 13
allele frequency: 1.123207188526007e-3
allele num: 11574
num of homozygotes: 0

FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 9704
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South Asian
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allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
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InbreedingCoeff
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SIO_000300: 9.5e-3

DP
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.94e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11548
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

African
type: Population
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allele num: 9704
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Other
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East Asian
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European (Finnish)
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allele num: 6606
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: -6.081e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 4.94e-1

DP
type: SiteQuality
SIO_000300: 3.752246e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.53e-1

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 371
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 747
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 3

South Asian
type: Population
allele count: 1844
allele frequency: 1.11730489578284e-1
allele num: 16504
num of homozygotes: 139

African
type: Population
allele count: 2347
allele frequency: 2.258902791145332e-1
allele num: 10390
num of homozygotes: 272

European (Finnish)
type: Population
allele count: 1033
allele frequency: 1.561838524342304e-1
allele num: 6614
num of homozygotes: 85

European (Non-Finnish)
type: Population
allele count: 11480
allele frequency: 1.720881427072403e-1
allele num: 66710
num of homozygotes: 1028

Other
type: Population
allele count: 105
allele frequency: 1.161504424778761e-1
allele num: 904
num of homozygotes: 8

East Asian
type: Population
allele count: 841
allele frequency: 9.720295885344429e-2
allele num: 8652
num of homozygotes: 30

Latino
type: Population
allele count: 886
allele frequency: 7.655088992569553e-2
allele num: 11574
num of homozygotes: 46

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

VQSLOD
type: SiteQuality
SIO_000300: 6.9e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.332841e6

QD
type: SiteQuality
SIO_000300: 1.555e1

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56903
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.647e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.77e-1

DP
type: SiteQuality
SIO_000300: 5.261133e6

MQRankSum
type: SiteQuality
SIO_000300: -1.119e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 1.076e1

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.996282304970918e-5
allele num: 66708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.236e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -4.519e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 5.261116e6

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 1.819e0

GenotypeQuality
all individuals: 431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56907
bin: 9.75e1
variant carriers: 165

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 1.295784381478922e-3
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 149
allele frequency: 1.434347323835194e-2
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e0

QD
type: SiteQuality
SIO_000300: 1.137e1

FS
type: SiteQuality
SIO_000300: 1.869e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 5.262983e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56882
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.148e0

DP
type: SiteQuality
SIO_000300: 5.253659e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

FS
type: SiteQuality
SIO_000300: 1.184e0

VQSLOD
type: SiteQuality
SIO_000300: 8.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56881
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1089
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.253224e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.004e0

FS
type: SiteQuality
SIO_000300: 3.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.758e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
SIO_000300: 9.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 49
allele frequency: 5.663430420711974e-3
allele num: 8652
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.86e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 5.254975e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

GenotypeQuality
all individuals: 1137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498980693128672e-5
allele num: 66712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.112e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.631e0

DP
type: SiteQuality
SIO_000300: 5.250019e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.956e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
all individuals: 1142
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

FS
type: SiteQuality
SIO_000300: 1.0005e1

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.53e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 5.249915e6

VQSLOD
type: SiteQuality
SIO_000300: -1.557e0

QD
type: SiteQuality
SIO_000300: 1.128e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
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variant carriers: 0

GenotypeQuality
all individuals: 236
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variant carriers: 0

GenotypeQuality
all individuals: 56880
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

FS
type: SiteQuality
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ClippingRankSum
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SIO_000300: -7.099999999999999e-2

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.249852e6

QD
type: SiteQuality
SIO_000300: 2.325e1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
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SIO_000300: 1.07e0

VQSLOD
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SIO_000300: -2.161e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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MQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
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QD
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MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 3.467406380027739e-4
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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DP
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QD
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
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allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e0

VQSLOD
type: SiteQuality
SIO_000300: 5.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10390
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South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.296e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
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QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.27e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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SIO_000300: 1.53e0

MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

African
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East Asian
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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FS
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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Other
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African
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South Asian
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European (Finnish)
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Latino
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QD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
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FS
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MQRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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Other
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African
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East Asian
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ClippingRankSum
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FS
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BaseQRankSum
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DP
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InbreedingCoeff
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MQ
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Latino
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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FS
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BaseQRankSum
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MQRankSum
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MQ
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QD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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VQSLOD
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QD
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FS
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 16504
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East Asian
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allele frequency: 0.0e0
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Other
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MQRankSum
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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FS
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66732
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East Asian
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Latino
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allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

DP
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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ClippingRankSum
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VQSLOD
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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QD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66732
num of homozygotes: 0

African
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Latino
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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MQ
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QD
type: SiteQuality
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MQRankSum
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SIO_000300: -2.32e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.62e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
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Latino
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allele frequency: 5.183137525915688e-4
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

FS
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ClippingRankSum
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MQ
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QD
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 4.495459585818323e-4
allele num: 66734
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African
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Other
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FS
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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South Asian
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Other
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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South Asian
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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African
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East Asian
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European (Finnish)
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Other
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VQSLOD
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DP
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MQ
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QD
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 1.873e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.32e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.463e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

DP
type: SiteQuality
SIO_000300: 2.807997e6

FS
type: SiteQuality
SIO_000300: 2.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.799e0

VQSLOD
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
all individuals: 1212
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.12294881214793e-5
allele num: 16332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

FS
type: SiteQuality
SIO_000300: 8.718e0

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

DP
type: SiteQuality
SIO_000300: 2.808981e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2074
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573712703008939e-5
allele num: 63544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 2.809609e6

QD
type: SiteQuality
SIO_000300: 1.54e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.258e0

FS
type: SiteQuality
SIO_000300: 5.013e0

VQSLOD
type: SiteQuality
SIO_000300: -6.252e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.103e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2075
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.639e0

FS
type: SiteQuality
SIO_000300: 5.626e0

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e0

QD
type: SiteQuality
SIO_000300: 1.117e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -9.660000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.4e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

DP
type: SiteQuality
SIO_000300: 2.810276e6

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.576044129235618e-5
allele num: 63450
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.811073e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.821e0

VQSLOD
type: SiteQuality
SIO_000300: -4.579e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.203e0

MQRankSum
type: SiteQuality
SIO_000300: 8.78e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.92e-1

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 66
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9200
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.719916288803627e-5
allele num: 11468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 2.810687e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.674e0

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.147037128104254e-5
allele num: 16268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 2.810356e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.080000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

FS
type: SiteQuality
SIO_000300: 1.541e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.087429317094389e-4
allele num: 9196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16268
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.315e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 4.594e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 2.810364e6

QD
type: SiteQuality
SIO_000300: 1.47e1

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.146788990825688e-3
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63380
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

FS
type: SiteQuality
SIO_000300: 4.33e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 1.32e1

VQSLOD
type: SiteQuality
SIO_000300: 9.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.96e0

DP
type: SiteQuality
SIO_000300: 2.810406e6

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577983967682888e-5
allele num: 63372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.810091e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.12e0

QD
type: SiteQuality
SIO_000300: 1.221e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.09e-1

MQ
type: SiteQuality
SIO_000300: 5.997e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.059e0

GenotypeQuality
all individuals: 3652
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2758
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2077
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 1.411e1

FS
type: SiteQuality
SIO_000300: 1.311e0

MQRankSum
type: SiteQuality
SIO_000300: -4.44e-1

DP
type: SiteQuality
SIO_000300: 2.81007e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.168e0

GenotypeQuality
all individuals: 132
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9791
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2145
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31838
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2907
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578083575306148e-5
allele num: 63368
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.279e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

DP
type: SiteQuality
SIO_000300: 2.809193e6

VQSLOD
type: SiteQuality
SIO_000300: -3.395e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.087e0

QD
type: SiteQuality
SIO_000300: 2.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2906
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63360
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.623e0

VQSLOD
type: SiteQuality
SIO_000300: -1.253e-1

QD
type: SiteQuality
SIO_000300: 1.429e1

MQRankSum
type: SiteQuality
SIO_000300: -1.419e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.808588e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1