2-218750436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750436
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750436
    reference: chr 2
allele count: 1
allele frequency: 8.368761088608442e-6
allele num: 119492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.137+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.834+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.67+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.741+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.945+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1116+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.741+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.741+31C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/2-218750450-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750450
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750450
    reference: chr 2
allele count: 2
allele frequency: 2.222074083949959e-5
allele num: 90006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.741+17G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1116+17G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.741+17G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.741+17G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.137+17G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.945+17G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.834+17G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.67+17G>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2876
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4595
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

2-218750453-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750453
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750454
    reference: chr 2
allele count: 58440
allele frequency: 4.816139506518765e-1
allele num: 121342
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.137+13dupC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.67+13dupC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.741+13dupC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.741+13dupC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.945+13dupC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1116+13dupC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.741+13dupC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.834+13dupC
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 3.75e1
  variant carriers: 687
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 4.75e1
  variant carriers: 1349
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 6.75e1
  variant carriers: 2086
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 8.75e1
  variant carriers: 2579
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.75e1
  variant carriers: 1719
genotype depth: GenotypeDepth
  all individuals: 19586
  bin: 9.75e1
  variant carriers: 19031
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 2.75e1
  variant carriers: 256
genotype depth: GenotypeDepth
  all individuals: 3569
  bin: 3.25e1
  variant carriers: 433
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 6.25e1
  variant carriers: 1810
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 9.25e1
  variant carriers: 2617
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 4.25e1
  variant carriers: 1011
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 5.25e1
  variant carriers: 1487
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 7.75e1
  variant carriers: 2443
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 7.25e1
  variant carriers: 2318
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 8.25e1
  variant carriers: 2716
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 50556
  bin: 9.75e1
  variant carriers: 42378
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 6.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 4
num of homozygotes: 15760
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

2-218750473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750473
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750473
    reference: chr 2
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.735C>T
  hgvsp: ENST00000430930.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1110C>T
  hgvsp: ENST00000446903.1:c.1110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.939C>T
  hgvsp: ENST00000413554.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.61C>T
  hgvsp: ENST00000453356.1:c.61C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.735C>T
  hgvsp: ENST00000171887.4:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.131C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.828C>T
  hgvsp: ENST00000310858.6:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.735C>T
  hgvsp: ENST00000419504.1:c.735C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4112
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4864
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2688
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp245Asp
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

2-218750497-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750497
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750497
    reference: chr 2
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.711G>A
  hgvsp: ENST00000419504.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.37G>A
  hgvsp: ENST00000453356.1:c.37G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.915G>A
  hgvsp: ENST00000413554.1:c.915G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.711G>A
  hgvsp: ENST00000171887.4:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.711G>A
  hgvsp: ENST00000430930.1:c.711G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1086G>A
  hgvsp: ENST00000446903.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.107G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.804G>A
  hgvsp: ENST00000310858.6:c.804G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4944
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu237Glu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

2-218750499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750499
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750499
    reference: chr 2
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.709G>A
  hgvsp: ENSP00000408724.1:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1084G>A
  hgvsp: ENSP00000405460.1:p.Glu362Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.913G>A
  hgvsp: ENSP00000400383.1:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.709G>A
  hgvsp: ENSP00000171887.4:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.709G>A
  hgvsp: ENSP00000406016.1:p.Glu237Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.35G>A
  hgvsp: ENSP00000414704.1:p.Glu13Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.105G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.802G>A
  hgvsp: ENSP00000308321.6:p.Glu268Lys
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4944
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu237Lys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

2-218750514-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750514
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750514
    reference: chr 2
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.90G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.694G>A
  hgvsp: ENSP00000408724.1:p.Val232Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.694G>A
  hgvsp: ENSP00000171887.4:p.Val232Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1069G>A
  hgvsp: ENSP00000405460.1:p.Val357Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.20G>A
  hgvsp: ENSP00000414704.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.898G>A
  hgvsp: ENSP00000400383.1:p.Val300Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.694G>A
  hgvsp: ENSP00000406016.1:p.Val232Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.787G>A
  hgvsp: ENSP00000308321.6:p.Val263Ile
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val232Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-218750515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750515
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750515
    reference: chr 2
allele count: 5
allele frequency: 4.118548294097296e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1068C>T
  hgvsp: ENST00000446903.1:c.1068C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.786C>T
  hgvsp: ENST00000310858.6:c.786C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.693C>T
  hgvsp: ENST00000430930.1:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.19C>T
  hgvsp: ENST00000453356.1:c.19C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.693C>T
  hgvsp: ENST00000171887.4:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.693C>T
  hgvsp: ENST00000419504.1:c.693C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.89C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.897C>T
  hgvsp: ENST00000413554.1:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25625
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser231Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

2-218750522-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750522
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750522
    reference: chr 2
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.686A>C
  hgvsp: ENSP00000171887.4:p.Gln229Pro
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.686A>C
  hgvsp: ENSP00000408724.1:p.Gln229Pro
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.686A>C
  hgvsp: ENSP00000406016.1:p.Gln229Pro
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.890A>C
  hgvsp: ENSP00000400383.1:p.Gln297Pro
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1061A>C
  hgvsp: ENSP00000405460.1:p.Gln354Pro
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.82A>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.779A>C
  hgvsp: ENSP00000308321.6:p.Gln260Pro
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.12A>C
  hgvsp: ENSP00000414704.1:p.Gln5Pro
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln229Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

2-218750524-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750524
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750524
    reference: chr 2
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1059C>A
  hgvsp: ENSP00000405460.1:p.Ser353Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.80C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.888C>A
  hgvsp: ENSP00000400383.1:p.Ser296Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.684C>A
  hgvsp: ENSP00000171887.4:p.Ser228Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.684C>A
  hgvsp: ENSP00000406016.1:p.Ser228Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.684C>A
  hgvsp: ENSP00000408724.1:p.Ser228Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.777C>A
  hgvsp: ENSP00000308321.6:p.Ser259Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.10C>A
  hgvsp: ENSP00000414704.1:p.Ser4Arg
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11921
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5970
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4864
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser228Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

2-218750529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750529
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750529
    reference: chr 2
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.883G>A
  hgvsp: ENSP00000400383.1:p.Asp295Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1054G>A
  hgvsp: ENSP00000405460.1:p.Asp352Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000414704
  ensembl transcript: ENST00000453356
  gene symbol: TNS1
  hgvsc: ENST00000453356.1:c.5G>A
  hgvsp: ENSP00000414704.1:p.Asp3Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.679G>A
  hgvsp: ENSP00000408724.1:p.Asp227Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.75G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.772G>A
  hgvsp: ENSP00000308321.6:p.Asp258Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.679G>A
  hgvsp: ENSP00000171887.4:p.Asp227Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.679G>A
  hgvsp: ENSP00000406016.1:p.Asp227Asn
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp227Asn
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-218750534-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750534
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750534
    reference: chr 2
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.767C>T
  hgvsp: ENSP00000308321.6:p.Pro256Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1049C>T
  hgvsp: ENSP00000405460.1:p.Pro350Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.674C>T
  hgvsp: ENSP00000406016.1:p.Pro225Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.674C>T
  hgvsp: ENSP00000171887.4:p.Pro225Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.878C>T
  hgvsp: ENSP00000400383.1:p.Pro293Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.674C>T
  hgvsp: ENSP00000408724.1:p.Pro225Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.70C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8605
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro225Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

2-218750537-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750537
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750537
    reference: chr 2
allele count: 2
allele frequency: 1.647582173160887e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.67T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.671T>A
  hgvsp: ENSP00000408724.1:p.Ile224Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.671T>A
  hgvsp: ENSP00000406016.1:p.Ile224Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.764T>A
  hgvsp: ENSP00000308321.6:p.Ile255Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.671T>A
  hgvsp: ENSP00000171887.4:p.Ile224Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.875T>A
  hgvsp: ENSP00000400383.1:p.Ile292Asn
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1046T>A
  hgvsp: ENSP00000405460.1:p.Ile349Asn
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4943
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25611
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Ile224Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

2-218750539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750539
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750539
    reference: chr 2
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.669C>T
  hgvsp: ENST00000419504.1:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1044C>T
  hgvsp: ENST00000446903.1:c.1044C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.669C>T
  hgvsp: ENST00000430930.1:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.669C>T
  hgvsp: ENST00000171887.4:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.762C>T
  hgvsp: ENST00000310858.6:c.762C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.65C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.873C>T
  hgvsp: ENST00000413554.1:c.873C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn223Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

2-218750548-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750548
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750548
    reference: chr 2
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-6C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-6C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-6C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-6C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-6C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.56C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-6C>G
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8598
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: c.666-6C>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

2-218750564-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750564
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750564
    reference: chr 2
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-22T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-22T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-22T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.40T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-22T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-22T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-22T>A
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7911
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5901
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3265
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25567
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

2-218750568-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750568
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750568
    reference: chr 2
allele count: 4
allele frequency: 3.296576505299247e-5
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-26T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-26T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-26T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-26T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-26T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-26T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.36T>C
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25559
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

2-218750568-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750568
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750567
    reference: chr 2
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-27delC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-27delC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-27delC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-27delC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.35delC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-27delC
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-27delC
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10419
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5882
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4901
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8784
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: AG
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

2-218750569-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750569
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750569
    reference: chr 2
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-27C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-27C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-27C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-27C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.35C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-27C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-27C>G
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6357
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

2-218750570-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750570
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750570
    reference: chr 2
allele count: 1
allele frequency: 8.241712957621112e-6
allele num: 121334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-28T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.34T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-28T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-28T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-28T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-28T>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-28T>A
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4829
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4893
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5866
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

2-218750573-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750573
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750573
    reference: chr 2
allele count: 5
allele frequency: 4.1209244057627e-5
allele num: 121332
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-31C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6351
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10375
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25550
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8424
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4823
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/2-218750576-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750576
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750576
    reference: chr 2
allele count: 20
allele frequency: 1.648804616652927e-4
allele num: 121300
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-34G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-34G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-34G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-34G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.28G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-34G>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-34G>T
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6337
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4103
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10327
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2551
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11420
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

2-218750581-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750581
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750581
    reference: chr 2
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-39C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-39C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-39C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.23C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-39C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-39C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-39C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7304
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

2-218750584-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750584
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750584
    reference: chr 2
allele count: 1
allele frequency: 8.247694769311978e-6
allele num: 121246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-42C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-42C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-42C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-42C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.20C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-42C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-42C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10055
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6887
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

2-218750586-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750586
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750586
    reference: chr 2
allele count: 3
allele frequency: 2.475329218786098e-5
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1041-44C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.666-44C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.666-44C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000079308
  ensembl transcript: ENST00000479185
  gene symbol: TNS1
  hgvsc: ENST00000479185.1:n.18C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.666-44C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.870-44C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.759-44C>G
  variant of: http://identifiers.org/hgnc/11973
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25486
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6256
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

2-218750719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750719
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750719
    reference: chr 2
allele count: 1
allele frequency: 8.269109913008963e-6
allele num: 120932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+48G>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

2-218750726-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750726
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750726
    reference: chr 2
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+41G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+41G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+41G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+41G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+41G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+41G>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2483
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6338
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7025
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37460
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4739
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

2-218750731-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750731
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750731
    reference: chr 2
allele count: 18731
allele frequency: 1.547019276829812e-1
allele num: 121078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+36C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+36C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+36C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+36C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+36C>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+36C>G
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 5.75e1
  variant carriers: 471
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 6.25e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 2.25e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 3.25e1
  variant carriers: 354
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.75e1
  variant carriers: 421
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 8.75e1
  variant carriers: 1075
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.75e1
  variant carriers: 962
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 2.75e1
  variant carriers: 531
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 3.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 832
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 5.25e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 6.75e1
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 9.75e1
  variant carriers: 6890
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 9.25e1
  variant carriers: 1050
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 4.25e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 4.75e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 8.25e1
  variant carriers: 1020
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 7.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 9.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3060
  bin: 8.25e1
  variant carriers: 28
num of homozygotes: 2037
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

2-218750731-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750731
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750731
    reference: chr 2
allele count: 1
allele frequency: 8.259138737012504e-6
allele num: 121078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+36C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+36C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+36C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+36C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+36C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+36C>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6057
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1762
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

2-218750734-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750734
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750734
    reference: chr 2
allele count: 18751
allele frequency: 1.548082956309237e-1
allele num: 121124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+33A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+33A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+33A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+33A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+33A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+33A>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 8.25e1
  variant carriers: 896
genotype depth: GenotypeDepth
  all individuals: 3510
  bin: 5.75e1
  variant carriers: 406
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 5.25e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 578
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 7.75e1
  variant carriers: 818
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 8.75e1
  variant carriers: 985
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 1044
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 3.75e1
  variant carriers: 260
genotype depth: GenotypeDepth
  all individuals: 6792
  bin: 4.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 352
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 6.75e1
  variant carriers: 573
genotype depth: GenotypeDepth
  all individuals: 9312
  bin: 9.75e1
  variant carriers: 7877
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 3.25e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 6.25e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 7.25e1
  variant carriers: 656
genotype depth: GenotypeDepth
  all individuals: 6038
  bin: 4.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 2.75e1
  variant carriers: 546
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 7.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 8.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3046
  bin: 6.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4572
  bin: 6.25e1
  variant carriers: 25
num of homozygotes: 2042
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
reference allele: T
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

2-218750741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750741
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750741
    reference: chr 2
allele count: 1
allele frequency: 8.250688932525866e-6
allele num: 121202
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+26C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+26C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+26C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+26C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+26C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+26C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37678
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

2-218750748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750748
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750748
    reference: chr 2
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+19T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+19T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+19T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+19T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+19T>C
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+19T>C
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6842
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

2-218750749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750749
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750749
    reference: chr 2
allele count: 1
allele frequency: 8.250552787036732e-6
allele num: 121204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+18G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+18G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+18G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+18G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+18G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+18G>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8778
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

2-218750750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750750
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750750
    reference: chr 2
allele count: 6
allele frequency: 4.949106686243133e-5
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+17C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6444
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37685
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

2-218750755-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750755
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750755
    reference: chr 2
allele count: 1
allele frequency: 8.246878556466378e-6
allele num: 121258
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.665+12A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.758+12A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1040+12A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.665+12A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.869+12A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.665+12A>G
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3439
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37691
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1857
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3291
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-218750786-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750786
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.646G>C
  hgvsp: ENSP00000171887.4:p.Val216Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1021G>C
  hgvsp: ENSP00000405460.1:p.Val341Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.646G>C
  hgvsp: ENSP00000406016.1:p.Val216Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.646G>C
  hgvsp: ENSP00000408724.1:p.Val216Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.850G>C
  hgvsp: ENSP00000400383.1:p.Val284Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.739G>C
  hgvsp: ENSP00000308321.6:p.Val247Leu
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37695
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val216Leu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

2-218750786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750786
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750786
    reference: chr 2
allele count: 3
allele frequency: 2.471821237888076e-5
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.739G>A
  hgvsp: ENSP00000308321.6:p.Val247Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.646G>A
  hgvsp: ENSP00000406016.1:p.Val216Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1021G>A
  hgvsp: ENSP00000405460.1:p.Val341Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.850G>A
  hgvsp: ENSP00000400383.1:p.Val284Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.646G>A
  hgvsp: ENSP00000171887.4:p.Val216Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.646G>A
  hgvsp: ENSP00000408724.1:p.Val216Met
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6845
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37695
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val216Met
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

2-218750789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750789
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750789
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.643C>T
  hgvsp: ENSP00000171887.4:p.Pro215Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.847C>T
  hgvsp: ENSP00000400383.1:p.Pro283Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.643C>T
  hgvsp: ENSP00000406016.1:p.Pro215Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.643C>T
  hgvsp: ENSP00000408724.1:p.Pro215Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1018C>T
  hgvsp: ENSP00000405460.1:p.Pro340Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.736C>T
  hgvsp: ENSP00000308321.6:p.Pro246Ser
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6847
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37692
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro215Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

2-218750792-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750792
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750792
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.640C>A
  hgvsp: ENSP00000171887.4:p.Gln214Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.640C>A
  hgvsp: ENSP00000408724.1:p.Gln214Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.844C>A
  hgvsp: ENSP00000400383.1:p.Gln282Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.640C>A
  hgvsp: ENSP00000406016.1:p.Gln214Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1015C>A
  hgvsp: ENSP00000405460.1:p.Gln339Lys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.733C>A
  hgvsp: ENSP00000308321.6:p.Gln245Lys
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln214Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

2-218750793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750793
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750793
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.843G>A
  hgvsp: ENSP00000400383.1:p.Met281Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.639G>A
  hgvsp: ENSP00000171887.4:p.Met213Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.639G>A
  hgvsp: ENSP00000408724.1:p.Met213Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.732G>A
  hgvsp: ENSP00000308321.6:p.Met244Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1014G>A
  hgvsp: ENSP00000405460.1:p.Met338Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.639G>A
  hgvsp: ENSP00000406016.1:p.Met213Ile
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met213Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

2-218750798-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750798
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750798
    reference: chr 2
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.727G>A
  hgvsp: ENSP00000308321.6:p.Ala243Thr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.838G>A
  hgvsp: ENSP00000400383.1:p.Ala280Thr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.634G>A
  hgvsp: ENSP00000171887.4:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.634G>A
  hgvsp: ENSP00000408724.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1009G>A
  hgvsp: ENSP00000405460.1:p.Ala337Thr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.634G>A
  hgvsp: ENSP00000406016.1:p.Ala212Thr
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala212Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

2-218750800-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750800
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750800
    reference: chr 2
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.725A>G
  hgvsp: ENSP00000308321.6:p.Gln242Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.836A>G
  hgvsp: ENSP00000400383.1:p.Gln279Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.632A>G
  hgvsp: ENSP00000406016.1:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.632A>G
  hgvsp: ENSP00000408724.1:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.632A>G
  hgvsp: ENSP00000171887.4:p.Gln211Arg
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.1007A>G
  hgvsp: ENSP00000405460.1:p.Gln336Arg
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln211Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-218750809-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750809
    reference: chr 2
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.716G>T
  hgvsp: ENSP00000308321.6:p.Arg239Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.998G>T
  hgvsp: ENSP00000405460.1:p.Arg333Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.827G>T
  hgvsp: ENSP00000400383.1:p.Arg276Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.623G>T
  hgvsp: ENSP00000406016.1:p.Arg208Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.623G>T
  hgvsp: ENSP00000171887.4:p.Arg208Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.623G>T
  hgvsp: ENSP00000408724.1:p.Arg208Leu
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37692
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3296
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3297
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg208Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum

2-218750809-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750809
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750809
    reference: chr 2
allele count: 10
allele frequency: 8.238996819747228e-5
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.827G>A
  hgvsp: ENSP00000400383.1:p.Arg276His
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.998G>A
  hgvsp: ENSP00000405460.1:p.Arg333His
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.716G>A
  hgvsp: ENSP00000308321.6:p.Arg239His
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.623G>A
  hgvsp: ENSP00000171887.4:p.Arg208His
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.623G>A
  hgvsp: ENSP00000408724.1:p.Arg208His
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.623G>A
  hgvsp: ENSP00000406016.1:p.Arg208His
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8777
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37692
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg208His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

2-218750810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750810
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750810
    reference: chr 2
allele count: 5
allele frequency: 4.119430529923544e-5
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.826C>T
  hgvsp: ENSP00000400383.1:p.Arg276Cys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.622C>T
  hgvsp: ENSP00000171887.4:p.Arg208Cys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.997C>T
  hgvsp: ENSP00000405460.1:p.Arg333Cys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.715C>T
  hgvsp: ENSP00000308321.6:p.Arg239Cys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.622C>T
  hgvsp: ENSP00000406016.1:p.Arg208Cys
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.622C>T
  hgvsp: ENSP00000408724.1:p.Arg208Cys
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2504
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37687
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg208Cys
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-218750817-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750817
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750817
    reference: chr 2
allele count: 18929
allele frequency: 1.559996703477831e-1
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.708A>G
  hgvsp: ENST00000310858.6:c.708A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.615A>G
  hgvsp: ENST00000430930.1:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.615A>G
  hgvsp: ENST00000171887.4:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.990A>G
  hgvsp: ENST00000446903.1:c.990A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.819A>G
  hgvsp: ENST00000413554.1:c.819A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.615A>G
  hgvsp: ENST00000419504.1:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 571
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.25e1
  variant carriers: 977
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 8.75e1
  variant carriers: 877
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2480
  bin: 6.25e1
  variant carriers: 538
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 3.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 7.75e1
  variant carriers: 685
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 3.75e1
  variant carriers: 274
genotype depth: GenotypeDepth
  all individuals: 6984
  bin: 4.25e1
  variant carriers: 365
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 2.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 658
genotype depth: GenotypeDepth
  all individuals: 6289
  bin: 4.75e1
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 10573
  bin: 9.75e1
  variant carriers: 9185
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 8.25e1
  variant carriers: 816
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 5.25e1
  variant carriers: 500
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.75e1
  variant carriers: 560
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39836
  bin: 9.75e1
  variant carriers: 16759
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Pro205Pro
num of homozygotes: 2088
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

2-218750821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750821
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750821
    reference: chr 2
allele count: 2
allele frequency: 1.648315421639085e-5
allele num: 121336
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.611G>A
  hgvsp: ENSP00000408724.1:p.Arg204Gln
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.704G>A
  hgvsp: ENSP00000308321.6:p.Arg235Gln
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.815G>A
  hgvsp: ENSP00000400383.1:p.Arg272Gln
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.611G>A
  hgvsp: ENSP00000171887.4:p.Arg204Gln
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.611G>A
  hgvsp: ENSP00000406016.1:p.Arg204Gln
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.986G>A
  hgvsp: ENSP00000405460.1:p.Arg329Gln
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2459
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg204Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD

2-218750822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750822
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750822
    reference: chr 2
allele count: 2
allele frequency: 1.648396933981703e-5
allele num: 121330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.610C>T
  hgvsp: ENSP00000406016.1:p.Arg204Trp
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.703C>T
  hgvsp: ENSP00000308321.6:p.Arg235Trp
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.814C>T
  hgvsp: ENSP00000400383.1:p.Arg272Trp
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.985C>T
  hgvsp: ENSP00000405460.1:p.Arg329Trp
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.610C>T
  hgvsp: ENSP00000171887.4:p.Arg204Trp
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.610C>T
  hgvsp: ENSP00000408724.1:p.Arg204Trp
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8292
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg204Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-218750826-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750826
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750826
    reference: chr 2
allele count: 1
allele frequency: 8.24279991427488e-6
allele num: 121318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.606A>G
  hgvsp: ENST00000419504.1:c.606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.606A>G
  hgvsp: ENST00000430930.1:c.606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.606A>G
  hgvsp: ENST00000171887.4:c.606A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.981A>G
  hgvsp: ENST00000446903.1:c.981A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.810A>G
  hgvsp: ENST00000413554.1:c.810A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.699A>G
  hgvsp: ENST00000310858.6:c.699A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8263
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8262
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: c.606A>G
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

2-218750837-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750837
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750837
    reference: chr 2
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-10A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-10A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-10A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-10A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-10A>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-10A>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2458
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29789
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

2-218750844-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750844
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750844
    reference: chr 2
allele count: 3
allele frequency: 2.475410918212423e-5
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-17C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-17C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4814
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

2-218750849-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750849
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750848
    reference: chr 2
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-23delT
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-23delT
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-23delT
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-23delT
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-23delT
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-23delT
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: TA
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

2-218750851-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750851
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750851
    reference: chr 2
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-24C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-24C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-24C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-24C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-24C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-24C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2378
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

2-218750860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750860
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750860
    reference: chr 2
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-33C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-33C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-33C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-33C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-33C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-33C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4044
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6130
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

2-218750867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750867
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750867
    reference: chr 2
allele count: 2
allele frequency: 1.653739932858159e-5
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-40G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-40G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-40G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-40G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-40G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-40G>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8658
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 750
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genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 7601
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genotype quality: GenotypeQuality
  all individuals: 6096
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 578
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 28
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genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 2280
  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 655
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
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genotype quality: GenotypeQuality
  all individuals: 39
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genotype quality: GenotypeQuality
  all individuals: 23
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genotype quality: GenotypeQuality
  all individuals: 29754
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

2-218750868-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750868
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750868
    reference: chr 2
allele count: 1
allele frequency: 8.267469162340024e-6
allele num: 120956
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-41A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-41A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-41A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-41A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-41A>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-41A>G
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8921
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29754
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  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

2-218750871-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750871
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750871
    reference: chr 2
allele count: 3
allele frequency: 2.482950407203867e-5
allele num: 120824
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-44G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-44G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-44G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-44G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-44G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-44G>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8627
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4215
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genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

2-218750875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750875
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750875
    reference: chr 2
allele count: 1
allele frequency: 8.285004142502071e-6
allele num: 120700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-48G>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-48G>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2111
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/2-218750879-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218750879
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218750879
    reference: chr 2
allele count: 1
allele frequency: 8.284043275842073e-6
allele num: 120714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.605-52T>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.605-52T>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.809-52T>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.980-52T>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.605-52T>G
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.698-52T>G
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6741
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8387
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 6.25e1
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genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 6.75e1
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genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 756
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 4245
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genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3881
  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

2-218751207-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751207
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751207
    reference: chr 2
allele count: 1
allele frequency: 3.360666756284447e-5
allele num: 29756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.979+50C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.604+50C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.697+50C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.808+50C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.604+50C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.604+50C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24090
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2399
  bin: 6.25e1
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genotype quality: GenotypeQuality
  all individuals: 7170
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genotype quality: GenotypeQuality
  all individuals: 16923
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 513
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genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

2-218751226-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751226
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751226
    reference: chr 2
allele count: 1
allele frequency: 3.191828917969997e-5
allele num: 31330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.604+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.808+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.697+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.604+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.604+31C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.979+31C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
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genotype depth: GenotypeDepth
  all individuals: 293
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2457
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

2-218751253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751253
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751253
    reference: chr 2
allele count: 1
allele frequency: 2.443195699975568e-5
allele num: 40930
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.979+4C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.604+4C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.808+4C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.604+4C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.604+4C>T
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.697+4C>T
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
hgvs: c.604+4C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

2-218751253-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751253
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751253
    reference: chr 2
allele count: 1
allele frequency: 2.443195699975568e-5
allele num: 40930
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.604+4C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.604+4C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.808+4C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.979+4C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.604+4C>A
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.697+4C>A
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32543
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
hgvs: c.604+4C>A
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/2-218751260-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751260
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751260
    reference: chr 2
allele count: 1
allele frequency: 2.236836218852056e-5
allele num: 44706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.601G>T
  hgvsp: ENSP00000408724.1:p.Gly201Ter
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.601G>T
  hgvsp: ENSP00000406016.1:p.Gly201Ter
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.694G>T
  hgvsp: ENSP00000308321.6:p.Gly232Ter
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.601G>T
  hgvsp: ENSP00000171887.4:p.Gly201Ter
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.976G>T
  hgvsp: ENSP00000405460.1:p.Gly326Ter
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.805G>T
  hgvsp: ENSP00000400383.1:p.Gly269Ter
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9178
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Gly201Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

2-218751272-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751272
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751272
    reference: chr 2
allele count: 3
allele frequency: 5.742506029631331e-5
allele num: 52242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.793T>A
  hgvsp: ENSP00000400383.1:p.Phe265Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.589T>A
  hgvsp: ENSP00000408724.1:p.Phe197Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.682T>A
  hgvsp: ENSP00000308321.6:p.Phe228Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.589T>A
  hgvsp: ENSP00000171887.4:p.Phe197Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.964T>A
  hgvsp: ENSP00000405460.1:p.Phe322Ile
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.589T>A
  hgvsp: ENSP00000406016.1:p.Phe197Ile
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe197Ile
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

2-218751284-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751284
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751284
    reference: chr 2
allele count: 26
allele frequency: 4.513888888888889e-4
allele num: 57600
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.577G>A
  hgvsp: ENSP00000171887.4:p.Gly193Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.670G>A
  hgvsp: ENSP00000308321.6:p.Gly224Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.952G>A
  hgvsp: ENSP00000405460.1:p.Gly318Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.577G>A
  hgvsp: ENSP00000408724.1:p.Gly193Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.781G>A
  hgvsp: ENSP00000400383.1:p.Gly261Ser
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.577G>A
  hgvsp: ENSP00000406016.1:p.Gly193Ser
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29394
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3786
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2156
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3888
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13343
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly193Ser
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

2-218751285-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751285
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751285
    reference: chr 2
allele count: 1
allele frequency: 1.717622810030917e-5
allele num: 58220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.576C>T
  hgvsp: ENST00000419504.1:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.780C>T
  hgvsp: ENST00000413554.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.576C>T
  hgvsp: ENST00000430930.1:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.669C>T
  hgvsp: ENST00000310858.6:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.576C>T
  hgvsp: ENST00000171887.4:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.951C>T
  hgvsp: ENST00000446903.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29856
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His192His
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

2-218751296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751296
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751296
    reference: chr 2
allele count: 23
allele frequency: 3.730980112253836e-4
allele num: 61646
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.565G>A
  hgvsp: ENSP00000406016.1:p.Val189Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.658G>A
  hgvsp: ENSP00000308321.6:p.Val220Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.940G>A
  hgvsp: ENSP00000405460.1:p.Val314Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.769G>A
  hgvsp: ENSP00000400383.1:p.Val257Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.565G>A
  hgvsp: ENSP00000408724.1:p.Val189Met
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.565G>A
  hgvsp: ENSP00000171887.4:p.Val189Met
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14817
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27844
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16523
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val189Met
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

2-218751297-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751297
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751297
    reference: chr 2
allele count: 3
allele frequency: 4.838865769863544e-5
allele num: 61998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.564C>T
  hgvsp: ENST00000419504.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.657C>T
  hgvsp: ENST00000310858.6:c.657C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.768C>T
  hgvsp: ENST00000413554.1:c.768C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.939C>T
  hgvsp: ENST00000446903.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.564C>T
  hgvsp: ENST00000171887.4:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.564C>T
  hgvsp: ENST00000430930.1:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14959
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27736
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His188His
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

2-218751301-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751301
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751301
    reference: chr 2
allele count: 1
allele frequency: 1.598823266076168e-5
allele num: 62546
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.560A>T
  hgvsp: ENSP00000171887.4:p.His187Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.653A>T
  hgvsp: ENSP00000308321.6:p.His218Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.935A>T
  hgvsp: ENSP00000405460.1:p.His312Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.560A>T
  hgvsp: ENSP00000406016.1:p.His187Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.764A>T
  hgvsp: ENSP00000400383.1:p.His255Leu
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.560A>T
  hgvsp: ENSP00000408724.1:p.His187Leu
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His187Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

2-218751302-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751302
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751302
    reference: chr 2
allele count: 1
allele frequency: 1.605858170606372e-5
allele num: 62272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.559C>T
  hgvsp: ENSP00000406016.1:p.His187Tyr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.559C>T
  hgvsp: ENSP00000171887.4:p.His187Tyr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.559C>T
  hgvsp: ENSP00000408724.1:p.His187Tyr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.934C>T
  hgvsp: ENSP00000405460.1:p.His312Tyr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.763C>T
  hgvsp: ENSP00000400383.1:p.His255Tyr
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.652C>T
  hgvsp: ENSP00000308321.6:p.His218Tyr
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4104
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.25e1
  variant carriers: 0
hgvs: p.His187Tyr
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

2-218751309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 218751309
    reference: chr 2
  end: Position
    type: ExactPosition
    position: 218751309
    reference: chr 2
allele count: 2
allele frequency: 3.220508196193359e-5
allele num: 62102
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000171887
  ensembl transcript: ENST00000171887
  gene symbol: TNS1
  hgvsc: ENST00000171887.4:c.552G>A
  hgvsp: ENST00000171887.4:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000400383
  ensembl transcript: ENST00000413554
  gene symbol: TNS1
  hgvsc: ENST00000413554.1:c.756G>A
  hgvsp: ENST00000413554.1:c.756G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000405460
  ensembl transcript: ENST00000446903
  gene symbol: TNS1
  hgvsc: ENST00000446903.1:c.927G>A
  hgvsp: ENST00000446903.1:c.927G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000308321
  ensembl transcript: ENST00000310858
  gene symbol: TNS1
  hgvsc: ENST00000310858.6:c.645G>A
  hgvsp: ENST00000310858.6:c.645G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000408724
  ensembl transcript: ENST00000419504
  gene symbol: TNS1
  hgvsc: ENST00000419504.1:c.552G>A
  hgvsp: ENST00000419504.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000079308
  ensembl protein: ENSP00000406016
  ensembl transcript: ENST00000430930
  gene symbol: TNS1
  hgvsc: ENST00000430930.1:c.552G>A
  hgvsp: ENST00000430930.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11973
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu184Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

GenotypeQuality
all individuals: 3939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4860
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28032
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2509
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.98e-1

DP
type: SiteQuality
SIO_000300: 3.524279e6

VQSLOD
type: SiteQuality
SIO_000300: -3.461e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.596e0

FS
type: SiteQuality
SIO_000300: 2.323e1

QD
type: SiteQuality
SIO_000300: 1.286e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2332
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27722
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2324
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.932363350373574e-4
allele num: 5086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.804e0

QD
type: SiteQuality
SIO_000300: 1.163e1

DP
type: SiteQuality
SIO_000300: 3.89222e6

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.81e0

GenotypeQuality
all individuals: 864
bin: 8.75e1
variant carriers: 51

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 10

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1481
bin: 8.25e1
variant carriers: 46

GenotypeQuality
all individuals: 1302
bin: 9.25e1
variant carriers: 60

GenotypeQuality
all individuals: 950
bin: 7.25e1
variant carriers: 29

GenotypeQuality
all individuals: 1381
bin: 7.75e1
variant carriers: 29

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 10146
allele frequency: 6.146855688840421e-1
allele num: 16506
num of homozygotes: 3170

Latino
type: Population
allele count: 6167
allele frequency: 5.329243000345661e-1
allele num: 11572
num of homozygotes: 1614

European (Finnish)
type: Population
allele count: 2557
allele frequency: 3.867211131276467e-1
allele num: 6612
num of homozygotes: 516

African
type: Population
allele count: 9100
allele frequency: 8.74495483374976e-1
allele num: 10406
num of homozygotes: 3994

European (Non-Finnish)
type: Population
allele count: 24498
allele frequency: 3.672753440676442e-1
allele num: 66702
num of homozygotes: 4551

Other
type: Population
allele count: 437
allele frequency: 4.812775330396476e-1
allele num: 908
num of homozygotes: 108

East Asian
type: Population
allele count: 5535
allele frequency: 6.409217230199167e-1
allele num: 8636
num of homozygotes: 1807

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.143e-1

DP
type: SiteQuality
SIO_000300: 4.929635e6

FS
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

MQ
type: SiteQuality
SIO_000300: 6.013e1

QD
type: SiteQuality
SIO_000300: 2.143e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25651
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.569e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.86e-2

QD
type: SiteQuality
SIO_000300: 1.117e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.343e0

DP
type: SiteQuality
SIO_000300: 2.727325e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5973
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4863
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25632
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.059e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.682e0

DP
type: SiteQuality
SIO_000300: 2.726942e6

QD
type: SiteQuality
SIO_000300: 1.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

MQ
type: SiteQuality
SIO_000300: 6.059e1

MQRankSum
type: SiteQuality
SIO_000300: -5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.86e-1

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25631
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4863
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5972
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.219e1

FS
type: SiteQuality
SIO_000300: 9.305e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 2.726944e6

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5972
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4186
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.26e-1

DP
type: SiteQuality
SIO_000300: 2.726772e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.223e0

QD
type: SiteQuality
SIO_000300: 8.9e0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.844675124951942e-4
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.726729e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.167e0

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 1.172e0

MQ
type: SiteQuality
SIO_000300: 6.037e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.911e0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2691
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25623
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.17e-1

MQ
type: SiteQuality
SIO_000300: 6.082e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

DP
type: SiteQuality
SIO_000300: 2.726357e6

VQSLOD
type: SiteQuality
SIO_000300: -1.203e0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4187
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4942
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498531439189594e-5
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.009e1

VQSLOD
type: SiteQuality
SIO_000300: -6.079e-1

QD
type: SiteQuality
SIO_000300: 1.083e1

FS
type: SiteQuality
SIO_000300: 8.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.705e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.616e0

DP
type: SiteQuality
SIO_000300: 2.726263e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.01e-1

GenotypeQuality
all individuals: 4944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5968
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25619
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.495729057395475e-5
allele num: 66730
num of homozygotes: 0

MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

QD
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VQSLOD
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FS
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BaseQRankSum
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MQ
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SIO_000300: 5.958e1

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele frequency: 0.0e0
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.997242536866083e-5
allele num: 66728
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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VQSLOD
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ClippingRankSum
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SIO_000300: 1.69e-1

BaseQRankSum
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QD
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MQ
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DP
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InbreedingCoeff
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FS
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SIO_000300: 1.377e0

MQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66728
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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InbreedingCoeff
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DP
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MQ
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SIO_000300: 5.975e1

MQRankSum
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ClippingRankSum
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FS
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.114e0

ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.751e0

MQRankSum
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.157e0

QD
type: SiteQuality
SIO_000300: 1.089e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8652
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South Asian
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allele frequency: 0.0e0
allele num: 16506
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Latino
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allele num: 11564
num of homozygotes: 0

Other
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num of homozygotes: 0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
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BaseQRankSum
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ClippingRankSum
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SIO_000300: -4.13e-1

VQSLOD
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DP
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16502
num of homozygotes: 0

East Asian
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European (Non-Finnish)
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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Latino
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African
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FS
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BaseQRankSum
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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num of homozygotes: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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European (Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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Latino
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Other
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VQSLOD
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DP
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MQ
type: SiteQuality
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
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num of homozygotes: 0

East Asian
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South Asian
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Other
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Latino
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num of homozygotes: 0

InbreedingCoeff
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QD
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BaseQRankSum
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ReadPosRankSum
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FS
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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Latino
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African
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South Asian
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European (Non-Finnish)
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MQ
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DP
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2676
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5808
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4886
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.497600767754318e-5
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.571e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.938e0

FS
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

DP
type: SiteQuality
SIO_000300: 2.711758e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.24e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25537
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4800
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 20
allele frequency: 1.922337562475971e-3
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.446e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

FS
type: SiteQuality
SIO_000300: 1.517e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.041e0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

DP
type: SiteQuality
SIO_000300: 2.706903e6

GenotypeQuality
all individuals: 4772
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25509
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.695849e6

MQRankSum
type: SiteQuality
SIO_000300: -1.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.486e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
all individuals: 2892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4702
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25493
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 524
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.354e0

VQSLOD
type: SiteQuality
SIO_000300: -5.433e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.85e0

MQRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.571e1

DP
type: SiteQuality
SIO_000300: 2.680493e6

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.819725827975252e-4
allele num: 16486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.210000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.321e0

FS
type: SiteQuality
SIO_000300: 3.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 2.67504e6

GenotypeQuality
all individuals: 489
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1728
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37461
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.891e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.328586e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.388e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.073e1

FS
type: SiteQuality
SIO_000300: 3.791e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.33e0

GenotypeQuality
all individuals: 3001
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3159
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16216
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

FS
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.331233e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.606e0

QD
type: SiteQuality
SIO_000300: 1.278e1

VQSLOD
type: SiteQuality
SIO_000300: -5.86e-2

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2879
bin: 7.75e1
variant carriers: 37

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 33

GenotypeQuality
all individuals: 4424
bin: 6.25e1
variant carriers: 25

GenotypeQuality
all individuals: 1762
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 39588
bin: 9.75e1
variant carriers: 16402

Other
type: Population
allele count: 128
allele frequency: 1.415929203539823e-1
allele num: 904
num of homozygotes: 9

East Asian
type: Population
allele count: 2831
allele frequency: 3.286510332017646e-1
allele num: 8614
num of homozygotes: 462

European (Finnish)
type: Population
allele count: 494
allele frequency: 7.473524962178517e-2
allele num: 6610
num of homozygotes: 9

European (Non-Finnish)
type: Population
allele count: 6047
allele frequency: 9.073312726945353e-2
allele num: 66646
num of homozygotes: 289

South Asian
type: Population
allele count: 4279
allele frequency: 2.619047619047619e-1
allele num: 16338
num of homozygotes: 568

African
type: Population
allele count: 3554
allele frequency: 3.418622547133513e-1
allele num: 10396
num of homozygotes: 617

Latino
type: Population
allele count: 1398
allele frequency: 1.208297320656871e-1
allele num: 11570
num of homozygotes: 83

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 3.568305e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.51e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

QD
type: SiteQuality
SIO_000300: 2.118e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 4424
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39588
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.85e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 2.118e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.51e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 3.568305e6

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 5

GenotypeQuality
all individuals: 3153
bin: 9.25e1
variant carriers: 27

GenotypeQuality
all individuals: 3066
bin: 8.25e1
variant carriers: 27

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 35

GenotypeQuality
all individuals: 143
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1649
bin: 7.25e1
variant carriers: 24

GenotypeQuality
all individuals: 39586
bin: 9.75e1
variant carriers: 16400

European (Non-Finnish)
type: Population
allele count: 6049
allele frequency: 9.074679708362086e-2
allele num: 66658
num of homozygotes: 289

European (Finnish)
type: Population
allele count: 494
allele frequency: 7.473524962178517e-2
allele num: 6610
num of homozygotes: 9

East Asian
type: Population
allele count: 2832
allele frequency: 3.286145277326526e-1
allele num: 8618
num of homozygotes: 462

South Asian
type: Population
allele count: 4292
allele frequency: 2.623471882640587e-1
allele num: 16360
num of homozygotes: 571

Other
type: Population
allele count: 128
allele frequency: 1.415929203539823e-1
allele num: 904
num of homozygotes: 9

African
type: Population
allele count: 3557
allele frequency: 3.420192307692307e-1
allele num: 10400
num of homozygotes: 619

Latino
type: Population
allele count: 1399
allele frequency: 1.20874373595991e-1
allele num: 11574
num of homozygotes: 83

QD
type: SiteQuality
SIO_000300: 2.018e1

MQ
type: SiteQuality
SIO_000300: 5.944e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.665e0

DP
type: SiteQuality
SIO_000300: 3.6444e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.480000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

GenotypeQuality
all individuals: 196
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1849
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5192
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.056e0

FS
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.176e1

ClippingRankSum
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SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

VQSLOD
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

DP
type: SiteQuality
SIO_000300: 3.605533e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

DP
type: SiteQuality
SIO_000300: 3.60938e6

VQSLOD
type: SiteQuality
SIO_000300: -1.107e0

QD
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SIO_000300: 1.139e1

BaseQRankSum
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SIO_000300: -1.323e0

MQRankSum
type: SiteQuality
SIO_000300: -7.99e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 5.868e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.542e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

QD
type: SiteQuality
SIO_000300: 1.033e1

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.59e-1

DP
type: SiteQuality
SIO_000300: 3.610147e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
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allele count: 4
allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.161e0

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

DP
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SIO_000300: 3.610921e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
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SIO_000300: -1.0e-4

BaseQRankSum
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SIO_000300: -4.5e-2

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66672
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.352e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

DP
type: SiteQuality
SIO_000300: 3.612532e6

MQRankSum
type: SiteQuality
SIO_000300: 4.73e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

FS
type: SiteQuality
SIO_000300: 2.073e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.442e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.157e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -3.25e-1

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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DP
type: SiteQuality
SIO_000300: 3.616026e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 8.149999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

South Asian
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num of homozygotes: 0

BaseQRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.06134076857801e-5
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DP
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
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South Asian
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African
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Latino
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European (Finnish)
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num of homozygotes: 0

Other
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InbreedingCoeff
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QD
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DP
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MQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Latino
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Other
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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Other
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Latino
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allele num: 11578
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.118e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.181e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.615788e6

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.656e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.073e1

FS
type: SiteQuality
SIO_000300: 7.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.02e-1

DP
type: SiteQuality
SIO_000300: 3.615847e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
all individuals: 3465
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

DP
type: SiteQuality
SIO_000300: 3.616209e6

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

FS
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3296
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494454103963068e-5
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.777675063554426e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.145e1

DP
type: SiteQuality
SIO_000300: 3.616209e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.25e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
all individuals: 3299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3298
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6087
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1864
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995563283170454e-5
allele num: 66716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 3.615601e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.172e0

FS
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.06e-1

QD
type: SiteQuality
SIO_000300: 2.279e1

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1758
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 14

GenotypeQuality
all individuals: 5216
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 3143
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4345
allele frequency: 2.632695104217159e-1
allele num: 16504
num of homozygotes: 582

European (Finnish)
type: Population
allele count: 504
allele frequency: 7.620199576655579e-2
allele num: 6614
num of homozygotes: 11

Latino
type: Population
allele count: 1404
allele frequency: 1.213063763608087e-1
allele num: 11574
num of homozygotes: 86

Other
type: Population
allele count: 129
allele frequency: 1.420704845814978e-1
allele num: 908
num of homozygotes: 9

European (Non-Finnish)
type: Population
allele count: 6140
allele frequency: 9.202913756407566e-2
allele num: 66718
num of homozygotes: 303

East Asian
type: Population
allele count: 2844
allele frequency: 3.298538622129436e-1
allele num: 8622
num of homozygotes: 474

African
type: Population
allele count: 3563
allele frequency: 3.425961538461538e-1
allele num: 10400
num of homozygotes: 623

VQSLOD
type: SiteQuality
SIO_000300: 5.32e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.584e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.64e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

DP
type: SiteQuality
SIO_000300: 3.829617e6

GenotypeQuality
all individuals: 2403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4881
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29792
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998231043684226e-5
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.815874e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.562e1

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: -1.206e0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4880
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4161
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29791
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

FS
type: SiteQuality
SIO_000300: 1.888e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

DP
type: SiteQuality
SIO_000300: 2.815644e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.08e0

QD
type: SiteQuality
SIO_000300: 1.259e1

GenotypeQuality
all individuals: 2417
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29791
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4282
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4878
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

VQSLOD
type: SiteQuality
SIO_000300: -3.049e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.814793e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 1.812e1

GenotypeQuality
all individuals: 2398
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8050
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4838
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 2.811515e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.358e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

MQ
type: SiteQuality
SIO_000300: 5.867e1

GenotypeQuality
all individuals: 2397
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2396
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29774
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499505054444011e-5
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.93e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.806e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

DP
type: SiteQuality
SIO_000300: 2.80773e6

QD
type: SiteQuality
SIO_000300: 9.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.0e0

QD
type: SiteQuality
SIO_000300: 1.615e1

ClippingRankSum
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SIO_000300: -1.401e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.803815e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-3

GenotypeQuality
all individuals: 29768
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4274
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e0

QD
type: SiteQuality
SIO_000300: 1.601e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.552e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.800738e6

FS
type: SiteQuality
SIO_000300: 2.435e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.301e-1

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 4244
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.983e1

FS
type: SiteQuality
SIO_000300: 6.533e0

QD
type: SiteQuality
SIO_000300: 1.522e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

DP
type: SiteQuality
SIO_000300: 2.786986e6

GenotypeQuality
all individuals: 4235
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 134
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 2.781278e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.974e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.52e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4232
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.136475208640157e-5
allele num: 16296
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.4e1

DP
type: SiteQuality
SIO_000300: 2.77983e6

MQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

FS
type: SiteQuality
SIO_000300: 3.041e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.828e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.505451596431682e-5
allele num: 66586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 2.775771e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.578e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.005e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.84e-1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.652015919709292e-5
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
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Latino
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allele frequency: 0.0e0
allele num: 676
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.13063320022818e-5
allele num: 14024
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 238
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South Asian
type: Population
allele count: 0
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allele num: 8368
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FS
type: SiteQuality
SIO_000300: 2.975e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
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allele num: 8538
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East Asian
type: Population
allele count: 0
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allele num: 2184
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Latino
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allele frequency: 1.291989664082687e-3
allele num: 774
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 4156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.902e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.989e0

VQSLOD
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InbreedingCoeff
type: SiteQuality
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FS
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.891410682840931e-5
allele num: 20444
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.265e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 9.4891e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

FS
type: SiteQuality
SIO_000300: 3.801e0

VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1355
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 2.935995302407516e-4
allele num: 3406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 314
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

DP
type: SiteQuality
SIO_000300: 9.4891e5

FS
type: SiteQuality
SIO_000300: 3.801e0

VQSLOD
type: SiteQuality
SIO_000300: 8.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.265e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.411116012351125e-5
allele num: 22670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.228e0

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.89746e5

FS
type: SiteQuality
SIO_000300: 3.416e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.092657342657343e-4
allele num: 27456
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-1

DP
type: SiteQuality
SIO_000300: 1.059536e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.686e0

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 2.466942964278666e-3
allele num: 10134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.24380433372259e-5
allele num: 30828
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.658e0

QD
type: SiteQuality
SIO_000300: 1.196e1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.5e-2

DP
type: SiteQuality
SIO_000300: 1.106256e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.197339813275355e-5
allele num: 31276
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.9e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.22e-1

DP
type: SiteQuality
SIO_000300: 1.111319e6

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 3.18e0

VQSLOD
type: SiteQuality
SIO_000300: -7.936e-1

QD
type: SiteQuality
SIO_000300: 6.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 20

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.889281507656066e-4
allele num: 5094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 2.692353715448128e-4
allele num: 33428
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 2.155172413793103e-3
allele num: 464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 4.8828125e-3
allele num: 2048
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3694
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.13637e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.55e0

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.658160552897395e-4
allele num: 3762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.942476824340385e-5
allele num: 33656
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.21e-1

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 2.524e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.138276e6

VQSLOD
type: SiteQuality
SIO_000300: 2.5e0

QD
type: SiteQuality
SIO_000300: 1.177e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3830
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6654
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.940830490530526e-5
allele num: 34004
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.268e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.878e1

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.509661835748792e-4
allele num: 6624
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2098
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.1e-3

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.11e-1

FS
type: SiteQuality
SIO_000300: 1.209e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e-1

DP
type: SiteQuality
SIO_000300: 1.136318e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 686
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GenotypeQuality
all individuals: 4106
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GenotypeQuality
all individuals: 1685
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GenotypeQuality
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GenotypeQuality
all individuals: 355
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GenotypeQuality
all individuals: 444
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.930142916444286e-5
allele num: 33726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 3.227e0

QD
type: SiteQuality
SIO_000300: 9.68e0

DP
type: SiteQuality
SIO_000300: 1.129452e6

MQ
type: SiteQuality
SIO_000300: 5.843e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3