1-171483652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483652
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483652
    reference: chr 1
allele count: 2
allele frequency: 8.913450396648542e-5
allele num: 22438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3614-23A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.291-23A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.533-23A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.285-23A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.482-23A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.291-23A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.285-23A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32920
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28870
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

1-171483656-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483656
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483656
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 22746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.285-19A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.285-19A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3614-19A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.482-19A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.533-19A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.291-19A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.291-19A>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33606
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3098
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30349
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

1-171483662-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483662
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483663
    reference: chr 1
allele count: 34
allele frequency: 1.684669507481915e-3
allele num: 20182
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.533-4dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3614-4dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.285-4dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.291-4dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.482-4dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.285-4dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.291-4dupT
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33061
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 29556
  bin: 7.5e0
  variant carriers: 9
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-171483662-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483662
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483661
    reference: chr 1
allele count: 154
allele frequency: 7.630561886829848e-3
allele num: 20182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.533-4delT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.291-4delT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.285-4delT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3614-4delT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.482-4delT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.291-4delT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.285-4delT
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 33061
  bin: 2.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 7.5e0
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 1.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 29556
  bin: 7.5e0
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 4.25e1
  variant carriers: 23
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: AT
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-171483671-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483671
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483671
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 23766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3614-4T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.285-4T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.291-4T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.533-4T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.285-4T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.291-4T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.482-4T>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31722
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1589
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 7.25e1
  variant carriers: 0
hgvs: c.285-4T>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-171483680-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483680
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483680
    reference: chr 1
allele count: 1
allele frequency: 4.08797318289592e-5
allele num: 24462
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.290C>G
  hgvsp: ENSP00000343629.4:p.Pro97Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.296C>G
  hgvsp: ENSP00000356716.3:p.Pro99Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.487C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.290C>G
  hgvsp: ENSP00000410219.2:p.Pro97Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.538C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.296C>G
  hgvsp: ENSP00000375928.3:p.Pro99Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3619C>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro97Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

1-171483694-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483694
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483694
    reference: chr 1
allele count: 5
allele frequency: 1.978004588970646e-4
allele num: 25278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.552G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.310G>A
  hgvsp: ENSP00000375928.3:p.Ala104Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.310G>A
  hgvsp: ENSP00000356716.3:p.Ala104Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3633G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.304G>A
  hgvsp: ENSP00000343629.4:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.501G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.304G>A
  hgvsp: ENSP00000410219.2:p.Ala102Thr
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16535
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Ala102Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/1-171483707-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483707
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483707
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 25922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.323C>A
  hgvsp: ENSP00000375928.3:p.Pro108His
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3646C>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.514C>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.323C>A
  hgvsp: ENSP00000356716.3:p.Pro108His
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.317C>A
  hgvsp: ENSP00000343629.4:p.Pro106His
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.565C>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.317C>A
  hgvsp: ENSP00000410219.2:p.Pro106His
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18547
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26297
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25195
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro106His
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

1-171483715-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483715
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483715
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 26384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.522G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.325G>T
  hgvsp: ENSP00000343629.4:p.Ala109Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3654G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.331G>T
  hgvsp: ENSP00000356716.3:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.325G>T
  hgvsp: ENSP00000410219.2:p.Ala109Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.331G>T
  hgvsp: ENSP00000375928.3:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.573G>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19630
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24997
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24035
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala109Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

1-171483716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483716
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483716
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 26402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.326C>T
  hgvsp: ENSP00000410219.2:p.Ala109Val
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.574C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.326C>T
  hgvsp: ENSP00000343629.4:p.Ala109Val
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3655C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.332C>T
  hgvsp: ENSP00000375928.3:p.Ala111Val
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.523C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.332C>T
  hgvsp: ENSP00000356716.3:p.Ala111Val
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24907
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19573
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15324
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala109Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/1-171483717-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483717
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483717
    reference: chr 1
allele count: 6716
allele frequency: 2.279701289884589e-1
allele num: 29460
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.327A>C
  hgvsp: ENST00000426496.2:c.327A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.333A>C
  hgvsp: ENST00000367742.3:c.333A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.333A>C
  hgvsp: ENST00000392078.3:c.333A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.524A>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3656A>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.575A>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.327A>C
  hgvsp: ENST00000338920.4:c.327A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.25e1
  variant carriers: 1489
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 21134
  bin: 2.5e0
  variant carriers: 989
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 2.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 20367
  bin: 7.5e0
  variant carriers: 3970
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 349
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 2.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.75e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 996
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 276
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.75e1
  variant carriers: 354
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.75e1
  variant carriers: 155
genotype quality: GenotypeQuality
  all individuals: 12474
  bin: 2.25e1
  variant carriers: 475
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 349
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.75e1
  variant carriers: 416
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 343
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 400
hgvs: p.Ala109Ala
num of homozygotes: 662
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

1-171483717-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483717
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483717
    reference: chr 1
allele count: 1
allele frequency: 3.394433129667346e-5
allele num: 29460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.327A>T
  hgvsp: ENST00000426496.2:c.327A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.333A>T
  hgvsp: ENST00000367742.3:c.333A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.333A>T
  hgvsp: ENST00000392078.3:c.333A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.327A>T
  hgvsp: ENST00000338920.4:c.327A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.524A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3656A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.575A>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2318
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18468
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7008
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala109Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

1-171483718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483718
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483718
    reference: chr 1
allele count: 2
allele frequency: 7.205649228995533e-5
allele num: 27756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.334G>A
  hgvsp: ENSP00000356716.3:p.Ala112Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.576G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.328G>A
  hgvsp: ENSP00000343629.4:p.Ala110Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3657G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.525G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.328G>A
  hgvsp: ENSP00000410219.2:p.Ala110Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.334G>A
  hgvsp: ENSP00000375928.3:p.Ala112Thr
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24146
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19786
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23070
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala110Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

1-171483718-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483718
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483718
    reference: chr 1
allele count: 229
allele frequency: 8.250468367199885e-3
allele num: 27756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.525G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.334G>T
  hgvsp: ENSP00000356716.3:p.Ala112Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.328G>T
  hgvsp: ENSP00000410219.2:p.Ala110Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.334G>T
  hgvsp: ENSP00000375928.3:p.Ala112Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3657G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.328G>T
  hgvsp: ENSP00000343629.4:p.Ala110Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.576G>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19786
  bin: 7.5e0
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 24146
  bin: 2.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 23070
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala110Ser
num of homozygotes: 5
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

1-171483721-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483721
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483721
    reference: chr 1
allele count: 1
allele frequency: 3.59945288316176e-5
allele num: 27782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.528C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.337C>T
  hgvsp: ENSP00000356716.3:p.Pro113Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.331C>T
  hgvsp: ENSP00000343629.4:p.Pro111Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3660C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.331C>T
  hgvsp: ENSP00000410219.2:p.Pro111Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.579C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.337C>T
  hgvsp: ENSP00000375928.3:p.Pro113Ser
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro111Ser
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

1-171483725-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483725
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483725
    reference: chr 1
allele count: 2
allele frequency: 7.193209610128039e-5
allele num: 27804
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.335C>G
  hgvsp: ENSP00000343629.4:p.Pro112Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3664C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.583C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.341C>G
  hgvsp: ENSP00000375928.3:p.Pro114Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.532C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.341C>G
  hgvsp: ENSP00000356716.3:p.Pro114Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.335C>G
  hgvsp: ENSP00000410219.2:p.Pro112Arg
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19644
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6679
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro112Arg
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

1-171483733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483733
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483733
    reference: chr 1
allele count: 2
allele frequency: 7.167944950182782e-5
allele num: 27902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.540G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3672G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.349G>A
  hgvsp: ENSP00000356716.3:p.Ala117Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.349G>A
  hgvsp: ENSP00000375928.3:p.Ala117Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.591G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.343G>A
  hgvsp: ENSP00000410219.2:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.343G>A
  hgvsp: ENSP00000343629.4:p.Ala115Thr
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19566
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24476
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23682
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala115Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

1-171483736-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483736
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483736
    reference: chr 1
allele count: 1
allele frequency: 3.581661891117478e-5
allele num: 27920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.352C>T
  hgvsp: ENSP00000375928.3:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.594C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.346C>T
  hgvsp: ENSP00000410219.2:p.Pro116Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.346C>T
  hgvsp: ENSP00000343629.4:p.Pro116Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.352C>T
  hgvsp: ENSP00000356716.3:p.Pro118Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.543C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3675C>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19087
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24886
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro116Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

1-171483738-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483738
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483738
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 27838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.348T>G
  hgvsp: ENST00000426496.2:c.348T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.596T>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.545T>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.354T>G
  hgvsp: ENST00000367742.3:c.354T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.354T>G
  hgvsp: ENST00000392078.3:c.354T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.348T>G
  hgvsp: ENST00000338920.4:c.348T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3677T>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25546
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18259
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro116Pro
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

1-171483754-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483754
    reference: chr 1
allele count: 1
allele frequency: 3.65764447695684e-5
allele num: 27340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.370G>T
  hgvsp: ENSP00000356716.3:p.Ala124Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.370G>T
  hgvsp: ENSP00000375928.3:p.Ala124Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.612G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.561G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.364G>T
  hgvsp: ENSP00000343629.4:p.Ala122Ser
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3693G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.364G>T
  hgvsp: ENSP00000410219.2:p.Ala122Ser
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28414
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27419
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala122Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

1-171483758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483758
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483758
    reference: chr 1
allele count: 1
allele frequency: 3.678634490876986e-5
allele num: 27184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.616G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.374G>A
  hgvsp: ENSP00000375928.3:p.Ser125Asn
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3697G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.368G>A
  hgvsp: ENSP00000410219.2:p.Ser123Asn
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.374G>A
  hgvsp: ENSP00000356716.3:p.Ser125Asn
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.368G>A
  hgvsp: ENSP00000343629.4:p.Ser123Asn
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.565G>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser123Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-171483795-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483795
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483795
    reference: chr 1
allele count: 1
allele frequency: 3.917267314321529e-5
allele num: 25528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+11A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+26A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+26A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+11A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+11A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+11A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+11A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32855
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2233
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

1-171483802-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483802
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483802
    reference: chr 1
allele count: 1
allele frequency: 3.984381225595665e-5
allele num: 25098
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+18G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+18G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+18G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+18G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+33G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+33G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+18G>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3593
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

1-171483805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483805
    reference: chr 1
allele count: 115
allele frequency: 4.603314386358178e-3
allele num: 24982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+36G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+36G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+21G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+21G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+21G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+21G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+21G>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31919
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4070
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2316
  bin: 9.75e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 964
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 1.75e1
  variant carriers: 2
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

1-171483811-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483811
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483811
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 24564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+27G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+27G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+42G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+27G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+27G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+42G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+27G>C
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5558
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

1-171483813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483813
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483813
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 24532
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+44C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+44C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+29C>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5526
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-171483817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483817
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483817
    reference: chr 1
allele count: 1
allele frequency: 4.098696614476597e-5
allele num: 24398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+33G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+48G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+48G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+33G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+33G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+33G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+33G>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1927
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

1-171483830-TGAACA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483830
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483825
    reference: chr 1
allele count: 2
allele frequency: 8.329862557267805e-5
allele num: 24010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+48_591+52delAACAG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+48_400+52delAACAG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+63_627+67delAACAG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+48_394+52delAACAG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+63_3708+67delAACAG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+48_400+52delAACAG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+48_394+52delAACAG
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10355
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: TGAACA
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-171483831-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171483831
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171483831
    reference: chr 1
allele count: 1
allele frequency: 4.165278240586471e-5
allele num: 24008
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.394+47G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.400+47G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.627+62G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.400+47G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.591+47G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3708+62G>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.394+47G>C
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19823
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

1-171484844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484844
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484844
    reference: chr 1
allele count: 1
allele frequency: 2.544917799155087e-5
allele num: 39294
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.401-29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.395-29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.592-29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3709-29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.628-29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.395-29C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.401-29C>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32442
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11110
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6935
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4834
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

1-171484849-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484849
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484849
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 41764
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.628-24A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.401-24A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.395-24A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3709-24A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.395-24A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.401-24A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.592-24A>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33375
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5411
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-171484858-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484858
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484858
    reference: chr 1
allele count: 2
allele frequency: 4.076474664709959e-5
allele num: 49062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.628-15T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.395-15T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.401-15T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.395-15T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.592-15T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.401-15T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3709-15T>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11919
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32108
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31111
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

1-171484858-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484858
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484859
    reference: chr 1
allele count: 41
allele frequency: 8.356773062655415e-4
allele num: 49062
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.395-8dupA
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.395-8dupA
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.401-8dupA
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3709-8dupA
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.628-8dupA
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.401-8dupA
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.592-8dupA
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32108
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11919
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3373
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31111
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

1-171484859-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484859
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484859
    reference: chr 1
allele count: 2
allele frequency: 4.005126561999359e-5
allele num: 49936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.401-14A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.401-14A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.395-14A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.592-14A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.395-14A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.628-14A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3709-14A>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12596
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

1-171484867-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484867
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484867
    reference: chr 1
allele count: 2
allele frequency: 3.080050512828411e-5
allele num: 64934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3709-6C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.395-6C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.628-6C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.401-6C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.395-6C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.401-6C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.592-6C>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20699
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 6.75e1
  variant carriers: 0
hgvs: c.395-6C>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

1-171484869-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484869
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484869
    reference: chr 1
allele count: 1
allele frequency: 1.425151066012997e-5
allele num: 70168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.628-4A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.395-4A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.592-4A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3709-4A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.401-4A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.395-4A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.401-4A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24773
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
hgvs: c.395-4A>G
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

1-171484878-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484878
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484878
    reference: chr 1
allele count: 1
allele frequency: 1.124328213892199e-5
allele num: 88942
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3714C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.406C>G
  hgvsp: ENSP00000356716.3:p.Gln136Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.597C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.400C>G
  hgvsp: ENSP00000343629.4:p.Gln134Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.400C>G
  hgvsp: ENSP00000410219.2:p.Gln134Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.406C>G
  hgvsp: ENSP00000375928.3:p.Gln136Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.633C>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln134Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

1-171484896-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484896
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484896
    reference: chr 1
allele count: 1
allele frequency: 9.430937246543562e-6
allele num: 106034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.651C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.615C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.418C>G
  hgvsp: ENSP00000410219.2:p.Gln140Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.424C>G
  hgvsp: ENSP00000375928.3:p.Gln142Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3732C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.418C>G
  hgvsp: ENSP00000343629.4:p.Gln140Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.424C>G
  hgvsp: ENSP00000356716.3:p.Gln142Glu
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln140Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

1-171484897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484897
    reference: chr 1
allele count: 1
allele frequency: 9.366979523782762e-6
allele num: 106758
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.652A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.425A>G
  hgvsp: ENSP00000375928.3:p.Gln142Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.616A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.419A>G
  hgvsp: ENSP00000343629.4:p.Gln140Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.419A>G
  hgvsp: ENSP00000410219.2:p.Gln140Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.425A>G
  hgvsp: ENSP00000356716.3:p.Gln142Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3733A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln140Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/1-171484910-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484910
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484910
    reference: chr 1
allele count: 1
allele frequency: 8.884150675195451e-6
allele num: 112560
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.432C>A
  hgvsp: ENST00000338920.4:c.432C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.629C>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.665C>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.438C>A
  hgvsp: ENST00000367742.3:c.438C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.432C>A
  hgvsp: ENST00000426496.2:c.432C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.438C>A
  hgvsp: ENST00000392078.3:c.438C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3746C>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40890
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro144Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

1-171484910-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484910
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484910
    reference: chr 1
allele count: 2
allele frequency: 1.77683013503909e-5
allele num: 112560
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3746C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.438C>T
  hgvsp: ENST00000392078.3:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.665C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.432C>T
  hgvsp: ENST00000338920.4:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.438C>T
  hgvsp: ENST00000367742.3:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.629C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.432C>T
  hgvsp: ENST00000426496.2:c.432C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42075
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4482
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro144Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

1-171484913-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484913
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484913
    reference: chr 1
allele count: 1
allele frequency: 8.784567272216171e-6
allele num: 113836
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.668C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.435C>G
  hgvsp: ENSP00000343629.4:p.Ser145Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.441C>G
  hgvsp: ENSP00000356716.3:p.Ser147Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.632C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3749C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.441C>G
  hgvsp: ENSP00000375928.3:p.Ser147Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.435C>G
  hgvsp: ENSP00000410219.2:p.Ser145Arg
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser145Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

1-171484919-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484919
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484919
    reference: chr 1
allele count: 1
allele frequency: 8.632149577887885e-6
allele num: 115846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3755G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.447G>A
  hgvsp: ENST00000367742.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.638G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.674G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.441G>A
  hgvsp: ENST00000338920.4:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.441G>A
  hgvsp: ENST00000426496.2:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.447G>A
  hgvsp: ENST00000392078.3:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln147Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

1-171484923-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484923
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484923
    reference: chr 1
allele count: 1
allele frequency: 8.553880895762407e-6
allele num: 116906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.445G>A
  hgvsp: ENSP00000410219.2:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.678G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000463586
  gene symbol: PRRC2C
  hgvsc: ENST00000463586.1:n.3759G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.445G>A
  hgvsp: ENSP00000343629.4:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.451G>A
  hgvsp: ENSP00000375928.3:p.Ala151Thr
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.642G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.451G>A
  hgvsp: ENSP00000356716.3:p.Ala151Thr
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5346
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala149Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

1-171484938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484938
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484938
    reference: chr 1
allele count: 2
allele frequency: 1.671122994652406e-5
allele num: 119680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.466A>G
  hgvsp: ENSP00000375928.3:p.Lys156Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.657A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.693A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.466A>G
  hgvsp: ENSP00000356716.3:p.Lys156Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.460A>G
  hgvsp: ENSP00000343629.4:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.460A>G
  hgvsp: ENSP00000410219.2:p.Lys154Glu
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4538
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys154Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

1-171484944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484944
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484944
    reference: chr 1
allele count: 2
allele frequency: 1.666083537428567e-5
allele num: 120042
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.466G>A
  hgvsp: ENSP00000343629.4:p.Glu156Lys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.472G>A
  hgvsp: ENSP00000356716.3:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.472G>A
  hgvsp: ENSP00000375928.3:p.Glu158Lys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.663G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.466G>A
  hgvsp: ENSP00000410219.2:p.Glu156Lys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.699G>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu156Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-171484948-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484948
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484948
    reference: chr 1
allele count: 1
allele frequency: 8.317530026283395e-6
allele num: 120228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.476A>G
  hgvsp: ENSP00000356716.3:p.Lys159Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.476A>G
  hgvsp: ENSP00000375928.3:p.Lys159Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.667A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.703A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.470A>G
  hgvsp: ENSP00000343629.4:p.Lys157Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.470A>G
  hgvsp: ENSP00000410219.2:p.Lys157Arg
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys157Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-171484960-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484960
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484960
    reference: chr 1
allele count: 6
allele frequency: 4.984051036682616e-5
allele num: 120384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.488A>G
  hgvsp: ENSP00000375928.3:p.Asp163Gly
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.482A>G
  hgvsp: ENSP00000343629.4:p.Asp161Gly
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.482A>G
  hgvsp: ENSP00000410219.2:p.Asp161Gly
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.715A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.488A>G
  hgvsp: ENSP00000356716.3:p.Asp163Gly
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.679A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp161Gly
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-171484964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484964
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484964
    reference: chr 1
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.719C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.486C>T
  hgvsp: ENST00000426496.2:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.683C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.492C>T
  hgvsp: ENST00000392078.3:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.492C>T
  hgvsp: ENST00000367742.3:c.492C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.486C>T
  hgvsp: ENST00000338920.4:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4619
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp162Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

1-171484969-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484969
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484969
    reference: chr 1
allele count: 3
allele frequency: 2.493807045836173e-5
allele num: 120298
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.497A>G
  hgvsp: ENSP00000356716.3:p.Tyr166Cys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.497A>G
  hgvsp: ENSP00000375928.3:p.Tyr166Cys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.491A>G
  hgvsp: ENSP00000343629.4:p.Tyr164Cys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.491A>G
  hgvsp: ENSP00000410219.2:p.Tyr164Cys
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.724A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.688A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5975
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr164Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

1-171484975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484975
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484975
    reference: chr 1
allele count: 4
allele frequency: 3.327178053933557e-5
allele num: 120222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.503C>T
  hgvsp: ENSP00000375928.3:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.497C>T
  hgvsp: ENSP00000410219.2:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.694C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.730C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.503C>T
  hgvsp: ENSP00000356716.3:p.Pro168Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.497C>T
  hgvsp: ENSP00000343629.4:p.Pro166Leu
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 5954
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro166Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

1-171484979-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484979
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484979
    reference: chr 1
allele count: 1
allele frequency: 8.334305668994715e-6
allele num: 119986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.507A>G
  hgvsp: ENST00000392078.3:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.734A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.507A>G
  hgvsp: ENST00000367742.3:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.501A>G
  hgvsp: ENST00000426496.2:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.698A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.501A>G
  hgvsp: ENST00000338920.4:c.501A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly167Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

1-171484988-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484988
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484988
    reference: chr 1
allele count: 1
allele frequency: 8.365680631776201e-6
allele num: 119536
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.510A>G
  hgvsp: ENST00000338920.4:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.510A>G
  hgvsp: ENST00000426496.2:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.516A>G
  hgvsp: ENST00000367742.3:c.516A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.707A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.743A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.516A>G
  hgvsp: ENST00000392078.3:c.516A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1504
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu170Leu
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD

1-171484990-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484990
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484990
    reference: chr 1
allele count: 8
allele frequency: 6.702525176360194e-5
allele num: 119358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.709G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.745G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.512G>A
  hgvsp: ENSP00000343629.4:p.Arg171His
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.518G>A
  hgvsp: ENSP00000356716.3:p.Arg173His
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.512G>A
  hgvsp: ENSP00000410219.2:p.Arg171His
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.518G>A
  hgvsp: ENSP00000375928.3:p.Arg173His
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg171His
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

1-171484990-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484990
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484990
    reference: chr 1
allele count: 1
allele frequency: 8.378156470450242e-6
allele num: 119358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.512G>T
  hgvsp: ENSP00000410219.2:p.Arg171Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.518G>T
  hgvsp: ENSP00000356716.3:p.Arg173Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.745G>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.512G>T
  hgvsp: ENSP00000343629.4:p.Arg171Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.518G>T
  hgvsp: ENSP00000375928.3:p.Arg173Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.709G>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg171Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

1-171484998-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484998
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171484998
    reference: chr 1
allele count: 8
allele frequency: 6.730267696397624e-5
allele num: 118866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000467601
  gene symbol: PRRC2C
  hgvsc: ENST00000467601.1:n.717A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520A>G
  hgvsp: ENSP00000343629.4:p.Asn174Asp
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526A>G
  hgvsp: ENSP00000375928.3:p.Asn176Asp
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526A>G
  hgvsp: ENSP00000356716.3:p.Asn176Asp
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520A>G
  hgvsp: ENSP00000410219.2:p.Asn174Asp
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2031
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn174Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-171484999-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171484999
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171485000
    reference: chr 1
allele count: 1
allele frequency: 8.416941620092923e-6
allele num: 118808
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520+2dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753+2dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526+2dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526+2dupT
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520+2dupT
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: splice donor
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5806
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 9.75e1
  variant carriers: 1
hgvs: c.520+2dupT
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

1-171485008-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171485008
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171485008
    reference: chr 1
allele count: 1
allele frequency: 8.457804015765346e-6
allele num: 118234
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520+10C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753+10C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526+10C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520+10C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526+10C>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

1-171485016-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171485016
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171485016
    reference: chr 1
allele count: 4
allele frequency: 3.393223732206783e-5
allele num: 117882
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753+18T>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526+18T>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526+18T>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520+18T>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520+18T>C
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3008
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2352
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2021
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39147
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

1-171485018-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171485018
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171485018
    reference: chr 1
allele count: 2
allele frequency: 1.698398410299088e-5
allele num: 117758
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520+20A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526+20A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520+20A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753+20A>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526+20A>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

1-171485029-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171485029
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171485028
    reference: chr 1
allele count: 144
allele frequency: 1.22852219018206e-3
allele num: 117214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526+32delG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526+32delG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520+32delG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520+32delG
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753+32delG
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9315
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4429
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36589
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 1
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: AG
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

1-171485031-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171485031
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171485031
    reference: chr 1
allele count: 1
allele frequency: 8.563256777817739e-6
allele num: 116778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520+33A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520+33A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526+33A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753+33A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526+33A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37759
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

1-171485042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171485042
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171485042
    reference: chr 1
allele count: 14
allele frequency: 1.205337925096857e-4
allele num: 116150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.526+44G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.753+44G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.520+44G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.520+44G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.526+44G>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36189
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2425
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

1-171486705-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486705
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486705
    reference: chr 1
allele count: 1
allele frequency: 8.637219506296534e-6
allele num: 115778
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.521-25C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.527-25C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.527-25C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.521-25C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.754-25C>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4552
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

1-171486713-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486713
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486713
    reference: chr 1
allele count: 1
allele frequency: 8.409863087428936e-6
allele num: 118908
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.527-17C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.521-17C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.754-17C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.521-17C>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.527-17C>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3685
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4963
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44450
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD

1-171486718-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486718
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486718
    reference: chr 1
allele count: 4
allele frequency: 3.3345004084763e-5
allele num: 119958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.527-12C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.521-12C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.521-12C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.527-12C>T
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.754-12C>T
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45329
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

1-171486723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486723
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486723
    reference: chr 1
allele count: 9
allele frequency: 7.467764151413067e-5
allele num: 120518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.754-7A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.521-7A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.527-7A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.527-7A>G
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.521-7A>G
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13744
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1068
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45761
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 9.75e1
  variant carriers: 9
hgvs: c.521-7A>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

1-171486732-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486732
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486732
    reference: chr 1
allele count: 4
allele frequency: 3.306058351929912e-5
allele num: 120990
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.523G>C
  hgvsp: ENSP00000343629.4:p.Val175Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.529G>C
  hgvsp: ENSP00000375928.3:p.Val177Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.529G>C
  hgvsp: ENSP00000356716.3:p.Val177Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.523G>C
  hgvsp: ENSP00000410219.2:p.Val175Leu
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.756G>C
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46074
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val175Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

1-171486737-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486737
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486737
    reference: chr 1
allele count: 2
allele frequency: 1.651718613217052e-5
allele num: 121086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.528T>A
  hgvsp: ENST00000426496.2:c.528T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.761T>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.528T>A
  hgvsp: ENST00000338920.4:c.528T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.534T>A
  hgvsp: ENST00000392078.3:c.534T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.534T>A
  hgvsp: ENST00000367742.3:c.534T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala176Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

1-171486776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486776
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486776
    reference: chr 1
allele count: 2
allele frequency: 1.648532805802836e-5
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.567G>A
  hgvsp: ENST00000338920.4:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.573G>A
  hgvsp: ENST00000367742.3:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.573G>A
  hgvsp: ENST00000392078.3:c.573G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.567G>A
  hgvsp: ENST00000426496.2:c.567G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.800G>A
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1653
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser189Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

1-171486780-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486780
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486780
    reference: chr 1
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.577T>C
  hgvsp: ENSP00000356716.3:p.Ser193Pro
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.804T>C
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.571T>C
  hgvsp: ENSP00000410219.2:p.Ser191Pro
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.571T>C
  hgvsp: ENSP00000343629.4:p.Ser191Pro
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.577T>C
  hgvsp: ENSP00000375928.3:p.Ser193Pro
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14244
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser191Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

1-171486783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486783
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486783
    reference: chr 1
allele count: 1
allele frequency: 8.242392271933006e-6
allele num: 121324
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000343629
  ensembl transcript: ENST00000338920
  gene symbol: PRRC2C
  hgvsc: ENST00000338920.4:c.574G>A
  hgvsp: ENSP00000343629.4:p.Asp192Asn
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.574G>A
  hgvsp: ENSP00000410219.2:p.Asp192Asn
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000356716
  ensembl transcript: ENST00000367742
  gene symbol: PRRC2C
  hgvsc: ENST00000367742.3:c.580G>A
  hgvsp: ENSP00000356716.3:p.Asp194Asn
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000117523
  ensembl transcript: ENST00000476522
  gene symbol: PRRC2C
  hgvsc: ENST00000476522.1:n.807G>A
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.580G>A
  hgvsp: ENSP00000375928.3:p.Asp194Asn
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46254
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp192Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

1-171486787-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 171486787
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 171486787
    reference: chr 1
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000410219
  ensembl transcript: ENST00000426496
  gene symbol: PRRC2C
  hgvsc: ENST00000426496.2:c.578A>G
  hgvsp: ENSP00000410219.2:p.Gln193Arg
  variant of: http://identifiers.org/hgnc/24903
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000117523
  ensembl protein: ENSP00000375928
  ensembl transcript: ENST00000392078
  gene symbol: PRRC2C
  hgvsc: ENST00000392078.3:c.584A>G
  hgvsp: ENSP00000375928.3:p.Gln195Arg
  variant of: http://identifiers.org/hgnc/24903
canonical: true
consequence: missense
filter: PASS
hgvs: p.Gln193Arg
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5543
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 460
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.148227712137487e-4
allele num: 9310
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.047e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.45e-1

FS
type: SiteQuality
SIO_000300: 2.588e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.497e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.04e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.03406e5

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5855
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.596e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.909999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.806e-1

QD
type: SiteQuality
SIO_000300: 1.504e1

DP
type: SiteQuality
SIO_000300: 4.17116e5

GenotypeQuality
all individuals: 5863
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3856
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1361
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3960
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 320
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 8.00182898948331e-4
allele num: 8748
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.957713390759593e-3
allele num: 2554
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1592
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.5662100456621e-3
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 3.351206434316354e-3
allele num: 5968
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.87928e5

FS
type: SiteQuality
SIO_000300: 3.184e0

QD
type: SiteQuality
SIO_000300: 6.14e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.35e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 326
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 716
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 5863
bin: 2.5e0
variant carriers: 12

GenotypeQuality
all individuals: 3856
bin: 2.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1361
bin: 9.75e1
variant carriers: 94

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 947
bin: 6.75e1
variant carriers: 19

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 7

European (Non-Finnish)
type: Population
allele count: 75
allele frequency: 8.573388203017833e-3
allele num: 8748
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.529051987767584e-3
allele num: 654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.281407035175879e-4
allele num: 1592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 35
allele frequency: 5.864611260053619e-3
allele num: 5968
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 1.566170712607674e-2
allele num: 2554
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.5662100456621e-3
allele num: 438
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.35e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

QD
type: SiteQuality
SIO_000300: 6.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

FS
type: SiteQuality
SIO_000300: 3.184e0

VQSLOD
type: SiteQuality
SIO_000300: 2.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 4.87928e5

GenotypeQuality
all individuals: 1017
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6566
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 483
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.834e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.370000000000001e-2

FS
type: SiteQuality
SIO_000300: 1.176e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 4.99603e5

QD
type: SiteQuality
SIO_000300: 1.0e1

GenotypeQuality
all individuals: 1150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30327
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10436
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.261988894497728e-4
allele num: 7924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.74e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.566e0

DP
type: SiteQuality
SIO_000300: 5.35484e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.96e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

FS
type: SiteQuality
SIO_000300: 5.618e0

QD
type: SiteQuality
SIO_000300: 2.832e1

GenotypeQuality
all individuals: 1036
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27312
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14135
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6096
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11050
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 1.632919660352711e-3
allele num: 3062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

QD
type: SiteQuality
SIO_000300: 1.42e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.65806e5

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.93e-1

FS
type: SiteQuality
SIO_000300: 4.539e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.02e-2

GenotypeQuality
all individuals: 6204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1075
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15142
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 5.81547e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.112000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.63e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 525
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1710
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7978
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.613e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.91479e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-2

QD
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.98e-1

GenotypeQuality
all individuals: 23811
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 288
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1529
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 526
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11886
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.039e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.26e-2

QD
type: SiteQuality
SIO_000300: 6.07e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 5.92267e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 341
bin: 3.25e1
variant carriers: 241

GenotypeQuality
all individuals: 18468
bin: 7.5e0
variant carriers: 394

GenotypeQuality
all individuals: 4537
bin: 2.5e0
variant carriers: 10

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 160

GenotypeQuality
all individuals: 2293
bin: 1.75e1
variant carriers: 527

GenotypeQuality
all individuals: 416
bin: 8.75e1
variant carriers: 283

GenotypeQuality
all individuals: 5148
bin: 6.25e1
variant carriers: 457

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 197

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 188

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 91

GenotypeQuality
all individuals: 7008
bin: 9.75e1
variant carriers: 5879

Other
type: Population
allele count: 60
allele frequency: 2.054794520547945e-1
allele num: 292
num of homozygotes: 3

Latino
type: Population
allele count: 172
allele frequency: 2.305630026809651e-1
allele num: 746
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 3434
allele frequency: 2.435460992907801e-1
allele num: 14100
num of homozygotes: 310

East Asian
type: Population
allele count: 118
allele frequency: 1.285403050108933e-1
allele num: 918
num of homozygotes: 5

African
type: Population
allele count: 547
allele frequency: 1.604105571847507e-1
allele num: 3410
num of homozygotes: 29

European (Finnish)
type: Population
allele count: 398
allele frequency: 2.128342245989305e-1
allele num: 1870
num of homozygotes: 40

South Asian
type: Population
allele count: 1987
allele frequency: 2.445839487936977e-1
allele num: 8124
num of homozygotes: 262

FS
type: SiteQuality
SIO_000300: 5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.357e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 8.15882e5

GenotypeQuality
all individuals: 513
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4537
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 918
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.932551319648094e-4
allele num: 3410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1870
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

DP
type: SiteQuality
SIO_000300: 8.15882e5

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.3e0

QD
type: SiteQuality
SIO_000300: 1.473e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.357e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 5.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 2
allele frequency: 2.4919013207077e-4
allele num: 8026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12856
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.38e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.5043e5

VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 8

GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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bin: 9.75e1
variant carriers: 232

GenotypeQuality
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bin: 6.75e1
variant carriers: 9

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 6.222775357809583e-4
allele num: 12856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

South Asian
type: Population
allele count: 141
allele frequency: 1.756790431098929e-2
allele num: 8026
num of homozygotes: 4

African
type: Population
allele count: 76
allele frequency: 2.30722525804493e-2
allele num: 3294
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 4.672897196261682e-3
allele num: 642
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.546099290780142e-3
allele num: 282
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.76e0

FS
type: SiteQuality
SIO_000300: 5.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.38e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

DP
type: SiteQuality
SIO_000300: 6.5043e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.756748371082842e-5
allele num: 12892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.463e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.38e-1

DP
type: SiteQuality
SIO_000300: 6.42801e5

VQSLOD
type: SiteQuality
SIO_000300: -1.394e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.22e-2

QD
type: SiteQuality
SIO_000300: 1.048e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 306
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.093845216331506e-4
allele num: 3282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.12e-1

FS
type: SiteQuality
SIO_000300: 1.2908e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.4e1

DP
type: SiteQuality
SIO_000300: 6.42974e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.341e0

VQSLOD
type: SiteQuality
SIO_000300: -1.349e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.536570374923171e-4
allele num: 13016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.249e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.31e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.4497e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39
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variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.501501501501501e-3
allele num: 666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 13032
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 3292
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 6.42922e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12966
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.59e-2

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1722
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 624
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 12612
num of homozygotes: 0

East Asian
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South Asian
type: Population
allele count: 1
allele frequency: 1.251251251251251e-4
allele num: 7992
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Other
type: Population
allele count: 0
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allele num: 280
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African
type: Population
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.977026164645821e-5
allele num: 12536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele num: 280
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.663e1

DP
type: SiteQuality
SIO_000300: 6.10749e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.812125484666901e-5
allele num: 11348
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 2.764e0

DP
type: SiteQuality
SIO_000300: 5.38424e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.74e-2

QD
type: SiteQuality
SIO_000300: 1.679e1

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 428
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3092
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1634
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.040816326530612e-3
allele num: 490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7880
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 11022
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.89e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: -2.303e0

DP
type: SiteQuality
SIO_000300: 5.18507e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 5057
bin: 6.25e1
variant carriers: 6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 50
allele frequency: 4.573728503476033e-3
allele num: 10932
num of homozygotes: 0

South Asian
type: Population
allele count: 60
allele frequency: 7.621951219512195e-3
allele num: 7872
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.493506493506494e-4
allele num: 3080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.066115702479339e-3
allele num: 484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 1.222493887530562e-3
allele num: 1636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.318e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 7.4e-1

DP
type: SiteQuality
SIO_000300: 5.11196e5

VQSLOD
type: SiteQuality
SIO_000300: 3.27e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 188
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.13e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.435e0

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 4.91101e5

QD
type: SiteQuality
SIO_000300: 6.89e0

GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.89615e5

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.157e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.289473684210526e-4
allele num: 3040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.272e-1

DP
type: SiteQuality
SIO_000300: 4.82263e5

FS
type: SiteQuality
SIO_000300: 2.372e0

MQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.23e-2

QD
type: SiteQuality
SIO_000300: 1.623e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.082e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.64451827242525e-4
allele num: 3010
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

FS
type: SiteQuality
SIO_000300: 8.041e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.91e-2

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -9.199000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

DP
type: SiteQuality
SIO_000300: 4.69829e5

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.769441187964049e-5
allele num: 10236
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.70087e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.88e-2

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 3.052e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.982e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 205
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.726344645051517e-5
allele num: 21158
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.72e-1

DP
type: SiteQuality
SIO_000300: 6.7088e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.832e1

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 183
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2658
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 22508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -5.925e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

DP
type: SiteQuality
SIO_000300: 7.05434e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 224
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.463661000246366e-4
allele num: 8118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2980
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.96273e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

MQ
type: SiteQuality
SIO_000300: 6.012e1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

GenotypeQuality
all individuals: 848
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 488
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1890
bin: 9.75e1
variant carriers: 31

GenotypeQuality
all individuals: 10546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 778
bin: 6.75e1
variant carriers: 3

Latino
type: Population
allele count: 6
allele frequency: 1.811594202898551e-3
allele num: 3312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.894226397939082e-4
allele num: 26396
num of homozygotes: 0

African
type: Population
allele count: 30
allele frequency: 7.249879168680522e-3
allele num: 4138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2980
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

DP
type: SiteQuality
SIO_000300: 7.96273e5

MQ
type: SiteQuality
SIO_000300: 6.012e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

GenotypeQuality
all individuals: 3129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11470
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.439369141496801e-5
allele num: 26884
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.26e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

FS
type: SiteQuality
SIO_000300: 7.345e0

VQSLOD
type: SiteQuality
SIO_000300: -7.608e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

DP
type: SiteQuality
SIO_000300: 8.08836e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 26296
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.987676406281057e-4
allele num: 10062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.50532e5

VQSLOD
type: SiteQuality
SIO_000300: 4.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.605e0

FS
type: SiteQuality
SIO_000300: 1.738e0

QD
type: SiteQuality
SIO_000300: 1.154e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e0

GenotypeQuality
all individuals: 1925
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1798
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10740
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.639079489074211e-5
allele num: 37892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.96231e5

QD
type: SiteQuality
SIO_000300: 8.81e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

MQ
type: SiteQuality
SIO_000300: 5.829e1

VQSLOD
type: SiteQuality
SIO_000300: -1.414e0

MQRankSum
type: SiteQuality
SIO_000300: -1.369e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

GenotypeQuality
all individuals: 567
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
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variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.716049382716049e-5
allele num: 12960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.147e1

FS
type: SiteQuality
SIO_000300: 3.59e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.516e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.161756e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

GenotypeQuality
all individuals: 7590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1957
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variant carriers: 1

GenotypeQuality
all individuals: 1384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720755755928004e-5
allele num: 58114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14922
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.631e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.314313e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.804e1

GenotypeQuality
all individuals: 211
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
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GenotypeQuality
all individuals: 4222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1964
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.662225183211193e-5
allele num: 15010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.266e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

DP
type: SiteQuality
SIO_000300: 1.320084e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.392e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.862e1

QD
type: SiteQuality
SIO_000300: 1.311e1

GenotypeQuality
all individuals: 4741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.056859015007398e-4
allele num: 9462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61932
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

QD
type: SiteQuality
SIO_000300: 9.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

DP
type: SiteQuality
SIO_000300: 1.385318e6

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40890
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61932
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.113718030014796e-4
allele num: 9462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7812
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.937e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.98e0

QD
type: SiteQuality
SIO_000300: 9.77e0

DP
type: SiteQuality
SIO_000300: 1.385318e6

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4927
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3840
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595150741745095e-5
allele num: 62690
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.826e0

VQSLOD
type: SiteQuality
SIO_000300: -1.097e0

QD
type: SiteQuality
SIO_000300: 1.377e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -1.914e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.506e0

DP
type: SiteQuality
SIO_000300: 1.401577e6

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1706
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GenotypeQuality
all individuals: 1346
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.192866335723479e-5
allele num: 10878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.771e0

DP
type: SiteQuality
SIO_000300: 1.427276e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.68e0

VQSLOD
type: SiteQuality
SIO_000300: -5.45e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

QD
type: SiteQuality
SIO_000300: 1.449e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 468
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variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551927493947483e-5
allele num: 64436
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

FS
type: SiteQuality
SIO_000300: 7.979e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e0

QD
type: SiteQuality
SIO_000300: 1.324e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.44055e6

VQSLOD
type: SiteQuality
SIO_000300: -5.256e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16286
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.764290755116443e-4
allele num: 11336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.26e-1

DP
type: SiteQuality
SIO_000300: 1.502126e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 1.121e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.145e1

GenotypeQuality
all individuals: 5939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2333
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1654
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.758396342535608e-4
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66122
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.239e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

DP
type: SiteQuality
SIO_000300: 1.507433e6

QD
type: SiteQuality
SIO_000300: 1.566e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.918e1

GenotypeQuality
all individuals: 107
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.5e0

MQ
type: SiteQuality
SIO_000300: 5.924e1

FS
type: SiteQuality
SIO_000300: 6.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e0

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.4e-1

DP
type: SiteQuality
SIO_000300: 1.508713e6

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.226391954868776e-4
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10232
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.641448131817127e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.312e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 1.818e0

DP
type: SiteQuality
SIO_000300: 1.510668e6

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

VQSLOD
type: SiteQuality
SIO_000300: 2.88e0

GenotypeQuality
all individuals: 660
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43574
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5976
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variant carriers: 0

GenotypeQuality
all individuals: 695
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variant carriers: 0

GenotypeQuality
all individuals: 2545
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1658
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.142506142506142e-5
allele num: 16280
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.510527e6

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.908e0

QD
type: SiteQuality
SIO_000300: 1.175e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.81e-1

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
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variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018321209743141e-5
allele num: 66262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16208
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.68e-1

FS
type: SiteQuality
SIO_000300: 4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.509757e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
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GenotypeQuality
all individuals: 1661
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
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GenotypeQuality
all individuals: 43393
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variant carriers: 0

GenotypeQuality
all individuals: 161
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GenotypeQuality
all individuals: 695
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.479236395190282e-4
allele num: 16134
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

FS
type: SiteQuality
SIO_000300: 5.425e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 1.509365e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2535
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5930
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 696
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43069
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510756586898719e-5
allele num: 66192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15952
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.329e0

VQSLOD
type: SiteQuality
SIO_000300: -2.56e-1

FS
type: SiteQuality
SIO_000300: 3.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

DP
type: SiteQuality
SIO_000300: 1.50509e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 9.92e0

GenotypeQuality
all individuals: 2341
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.497023e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQ
type: SiteQuality
SIO_000300: 5.725e1

MQRankSum
type: SiteQuality
SIO_000300: -3.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.488e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.13e-1

FS
type: SiteQuality
SIO_000300: 5.341e0

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeQuality
all individuals: 2536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 5860
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.02929326588107e-5
allele num: 66022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15518
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.364525139664804e-4
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.494693e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 1.191e1

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2042
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514646632940535e-5
allele num: 66022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

FS
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.95e-1

DP
type: SiteQuality
SIO_000300: 1.494693e6

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.191e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.16e-1

GenotypeQuality
all individuals: 695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 2253
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 1654
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41181
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GenotypeQuality
all individuals: 2353
bin: 9.75e1
variant carriers: 8

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15174
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.214181641573579e-4
allele num: 65888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.28e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.48269e6

VQSLOD
type: SiteQuality
SIO_000300: 3.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41091
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.729050279329609e-5
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65880
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.86e-1

DP
type: SiteQuality
SIO_000300: 1.481452e6

MQ
type: SiteQuality
SIO_000300: 5.994e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

FS
type: SiteQuality
SIO_000300: 1.799e0

QD
type: SiteQuality
SIO_000300: 1.431e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.838e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521190179196203e-5
allele num: 65738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14728
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 3.955e0

DP
type: SiteQuality
SIO_000300: 1.4677e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -6.881e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.96078431372549e-4
allele num: 10200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.046551303923958e-5
allele num: 65648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.12e-2

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.217000000000001e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.458179e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320724065908564e-4
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.09e-1

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 143

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.293577981651376e-3
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.580012824035908e-5
allele num: 65502
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13982
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.250262513125656e-4
allele num: 11428
num of homozygotes: 0

African
type: Population
allele count: 133
allele frequency: 1.303155006858711e-2
allele num: 10206
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.688e0

DP
type: SiteQuality
SIO_000300: 1.451208e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.08e0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.96e-1

MQ
type: SiteQuality
SIO_000300: 6.005e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

FS
type: SiteQuality
SIO_000300: 1.391e0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528023959415684e-5
allele num: 65444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.691e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.18e0

DP
type: SiteQuality
SIO_000300: 1.44924e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.706e0

VQSLOD
type: SiteQuality
SIO_000300: -2.75e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 1.509e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.626016260162602e-3
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13304
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.439886e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

VQSLOD
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.82e0

FS
type: SiteQuality
SIO_000300: 5.612e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15030
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.223091976516634e-4
allele num: 8176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64422
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10976
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.116e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

FS
type: SiteQuality
SIO_000300: 2.065e0

DP
type: SiteQuality
SIO_000300: 1.516886e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.806e0

MQ
type: SiteQuality
SIO_000300: 5.71e1

QD
type: SiteQuality
SIO_000300: 1.801e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-5
allele num: 65840
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

FS
type: SiteQuality
SIO_000300: 4.406e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.569329e6

VQSLOD
type: SiteQuality
SIO_000300: 8.3e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 1
allele frequency: 9.904912836767037e-5
allele num: 10096
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.528575310207409e-5
allele num: 66246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 9.52e0

DP
type: SiteQuality
SIO_000300: 1.584038e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 3.632e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -4.347e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1524
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.04384133611691e-3
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16280
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.06e-1

FS
type: SiteQuality
SIO_000300: 4.124e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.61e-1

QD
type: SiteQuality
SIO_000300: 1.314e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 1.590875e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.005284650492433e-5
allele num: 66608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 2.539e0

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.966e1

VQSLOD
type: SiteQuality
SIO_000300: 9.79e-1

DP
type: SiteQuality
SIO_000300: 1.596621e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.278e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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Other
type: Population
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Latino
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allele count: 2
allele frequency: 1.738525730180807e-4
allele num: 11504
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
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VQSLOD
type: SiteQuality
SIO_000300: -1.42e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10402
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498800959232614e-5
allele num: 66720
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Other
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allele num: 906
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.95e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.926e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.601377e6

VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.615384615384615e-5
allele num: 10400
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European (Finnish)
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allele num: 6614
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East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
allele num: 11534
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

Other
type: Population
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DP
type: SiteQuality
SIO_000300: 1.601309e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.1467e1

ClippingRankSum
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InbreedingCoeff
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