http://identifiers.org/exac.variant/5-1318510-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318510
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318510
    reference: chr 5
allele count: 1
allele frequency: 8.278145695364238e-6
allele num: 120800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.752G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1591G>T
  hgvsp: ENSP00000313854.5:p.Ala531Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1483G>T
  hgvsp: ENSP00000315196.6:p.Ala495Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1084G>T
  hgvsp: ENSP00000423321.1:p.Ala362Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.286G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.3013G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.522G>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala531Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD

5-1318510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318510
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318510
    reference: chr 5
allele count: 5
allele frequency: 4.139072847682119e-5
allele num: 120800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.3013G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1483G>A
  hgvsp: ENSP00000315196.6:p.Ala495Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.752G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.286G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1084G>A
  hgvsp: ENSP00000423321.1:p.Ala362Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1591G>A
  hgvsp: ENSP00000313854.5:p.Ala531Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.522G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16646
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala531Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum

5-1318513-TCTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318513
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318510
    reference: chr 5
allele count: 1
allele frequency: 8.275953389830508e-6
allele num: 120832
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1585_1587delGAG
  hgvsp: ENSP00000313854.5:p.Glu529del
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1477_1479delGAG
  hgvsp: ENSP00000315196.6:p.Glu493del
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.746_748delGAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.3007_3009delGAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1078_1080delGAG
  hgvsp: ENSP00000423321.1:p.Glu360del
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.516_518delGAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.280_282delGAG
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16698
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu529del
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: TCTC
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

5-1318519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318519
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318519
    reference: chr 5
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.3004G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.513G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1075G>A
  hgvsp: ENSP00000423321.1:p.Glu359Lys
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1582G>A
  hgvsp: ENSP00000313854.5:p.Glu528Lys
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.277G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1474G>A
  hgvsp: ENSP00000315196.6:p.Glu492Lys
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.743G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2812
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8600
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu528Lys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

5-1318520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318520
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318520
    reference: chr 5
allele count: 5
allele frequency: 4.135922972570559e-5
allele num: 120892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.276C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.512C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1473C>T
  hgvsp: ENST00000320927.6:c.1473C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.3003C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1581C>T
  hgvsp: ENST00000320895.5:c.1581C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.742C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1074C>T
  hgvsp: ENST00000507807.1:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr527Tyr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-1318520-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318520
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318520
    reference: chr 5
allele count: 1
allele frequency: 8.271845945141119e-6
allele num: 120892
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1074C>A
  hgvsp: ENSP00000423321.1:p.Tyr358Ter
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.276C>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1473C>A
  hgvsp: ENSP00000315196.6:p.Tyr491Ter
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.742C>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1581C>A
  hgvsp: ENSP00000313854.5:p.Tyr527Ter
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.512C>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.3003C>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr527Ter
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-1318527-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318527
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318527
    reference: chr 5
allele count: 2
allele frequency: 1.653767281868095e-5
allele num: 120936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.505A>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1466A>T
  hgvsp: ENSP00000315196.6:p.Glu489Val
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1067A>T
  hgvsp: ENSP00000423321.1:p.Glu356Val
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.735A>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.269A>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1574A>T
  hgvsp: ENSP00000313854.5:p.Glu525Val
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2996A>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu525Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-1318533-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318533
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318533
    reference: chr 5
allele count: 1
allele frequency: 8.266922390132602e-6
allele num: 120964
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1568T>C
  hgvsp: ENSP00000313854.5:p.Phe523Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.729T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.263T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.499T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1061T>C
  hgvsp: ENSP00000423321.1:p.Phe354Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2990T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1460T>C
  hgvsp: ENSP00000315196.6:p.Phe487Ser
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23174
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8616
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe523Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

5-1318535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318535
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318535
    reference: chr 5
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1566G>A
  hgvsp: ENST00000320895.5:c.1566G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.727G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.261G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.497G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1458G>A
  hgvsp: ENST00000320927.6:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1059G>A
  hgvsp: ENST00000507807.1:c.1059G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2988G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2814
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu522Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

5-1318538-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318538
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318538
    reference: chr 5
allele count: 5
allele frequency: 4.133734581170012e-5
allele num: 120956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.258C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.724C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1455C>T
  hgvsp: ENST00000320927.6:c.1455C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.494C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1563C>T
  hgvsp: ENST00000320895.5:c.1563C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1056C>T
  hgvsp: ENST00000507807.1:c.1056C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2985C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3911
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34466
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn521Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

5-1318548-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318548
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318548
    reference: chr 5
allele count: 2
allele frequency: 1.653739932858159e-5
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1553G>A
  hgvsp: ENSP00000313854.5:p.Arg518His
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.248G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1445G>A
  hgvsp: ENSP00000315196.6:p.Arg482His
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1046G>A
  hgvsp: ENSP00000423321.1:p.Arg349His
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.484G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.714G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2975G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34378
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg518His
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

5-1318549-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318549
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318549
    reference: chr 5
allele count: 1
allele frequency: 8.269656974628692e-6
allele num: 120924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1045C>T
  hgvsp: ENSP00000423321.1:p.Arg349Cys
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2974C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1552C>T
  hgvsp: ENSP00000313854.5:p.Arg518Cys
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1444C>T
  hgvsp: ENSP00000315196.6:p.Arg482Cys
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.247C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.483C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.713C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34400
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8579
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg518Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

5-1318552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318552
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318552
    reference: chr 5
allele count: 1
allele frequency: 8.269656974628692e-6
allele num: 120924
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1549A>G
  hgvsp: ENSP00000313854.5:p.Lys517Glu
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.480A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1042A>G
  hgvsp: ENSP00000423321.1:p.Lys348Glu
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.710A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.244A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1441A>G
  hgvsp: ENSP00000315196.6:p.Lys481Glu
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2971A>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4181
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8589
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34431
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys517Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-1318559-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318559
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318559
    reference: chr 5
allele count: 1
allele frequency: 8.271572260455268e-6
allele num: 120896
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1542T>G
  hgvsp: ENST00000320895.5:c.1542T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2964T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.473T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.703T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1035T>G
  hgvsp: ENST00000507807.1:c.1035T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1434T>G
  hgvsp: ENST00000320927.6:c.1434T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.237T>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8588
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro514Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

5-1318585-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318585
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318585
    reference: chr 5
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2955-17C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.464-17C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1425-17C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1533-17C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1026-17C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.228-17C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.694-17C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

5-1318593-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318593
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318593
    reference: chr 5
allele count: 1
allele frequency: 8.326533331112925e-6
allele num: 120098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.464-25G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1533-25G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2955-25G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1026-25G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1425-25G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.694-25G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.228-25G>C
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22071
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7974
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4086
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-1318598-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318598
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318598
    reference: chr 5
allele count: 2
allele frequency: 1.667834150572067e-5
allele num: 119916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1026-30T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2955-30T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.694-30T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1425-30T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.228-30T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.464-30T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1533-30T>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11407
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12691
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28646
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/5-1318600-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318600
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318600
    reference: chr 5
allele count: 1
allele frequency: 8.343484572897024e-6
allele num: 119854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1425-32G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2955-32G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.464-32G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.694-32G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1533-32G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.228-32G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1026-32G>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1170
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

5-1318600-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318600
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318600
    reference: chr 5
allele count: 1
allele frequency: 8.343484572897024e-6
allele num: 119854
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.228-32G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1026-32G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1425-32G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.464-32G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.694-32G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2955-32G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1533-32G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1657
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS

5-1318602-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318602
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318602
    reference: chr 5
allele count: 1
allele frequency: 8.350591221858508e-6
allele num: 119752
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1533-34G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1425-34G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2955-34G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1026-34G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.228-34G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.694-34G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.464-34G>C
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-1318620-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1318620
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1318620
    reference: chr 5
allele count: 1
allele frequency: 8.464676903282601e-6
allele num: 118138
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.464-52A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.694-52A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.228-52A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2955-52A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1533-52A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1026-52A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1425-52A>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5119
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

5-1320685-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320685
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320685
    reference: chr 5
allele count: 53
allele frequency: 3.636613146699602e-3
allele num: 14574
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+46G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+46G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+46G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+46G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+46G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.342G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+46G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+46G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6380
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-1320688-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320688
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320688
    reference: chr 5
allele count: 1
allele frequency: 6.821282401091406e-5
allele num: 14660
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+43G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+43G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+43G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+43G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.339G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+43G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+43G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+43G>C
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum

5-1320688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320688
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320688
    reference: chr 5
allele count: 1
allele frequency: 6.821282401091406e-5
allele num: 14660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+43G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.339G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+43G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+43G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+43G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+43G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+43G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+43G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3396
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

5-1320696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320696
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320696
    reference: chr 5
allele count: 2
allele frequency: 1.353363107321694e-4
allele num: 14778
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.331G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+35G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+35G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+35G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+35G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+35G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+35G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+35G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

5-1320704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320704
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320704
    reference: chr 5
allele count: 507
allele frequency: 3.298633702016916e-2
allele num: 15370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+27G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+27G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+27G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+27G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+27G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+27G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.323G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+27G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.75e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 1.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 2.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 7.5e0
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 5984
  bin: 2.5e0
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 3.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 3096
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4270
  bin: 7.5e0
  variant carriers: 16
num of homozygotes: 15
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

5-1320708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320708
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320708
    reference: chr 5
allele count: 1
allele frequency: 6.380806533945891e-5
allele num: 15672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+23G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+23G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.319G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+23G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+23G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+23G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+23G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+23G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4788
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-1320709-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320709
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320709
    reference: chr 5
allele count: 1
allele frequency: 6.289308176100629e-5
allele num: 15900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+22C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+22C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+22C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+22C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+22C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+22C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+22C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.318C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5017
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

5-1320717-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320717
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320717
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 16512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+14C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+14C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+14C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.310C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+14C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+14C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+14C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+14C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5687
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

5-1320719-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320719
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320719
    reference: chr 5
allele count: 1
allele frequency: 5.962318149296446e-5
allele num: 16772
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+12T>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+12T>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.308T>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+12T>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+12T>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+12T>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+12T>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+12T>A
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 791
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

5-1320722-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320722
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320722
    reference: chr 5
allele count: 6456
allele frequency: 3.461291014368432e-1
allele num: 18652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.305G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1532+9G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1424+9G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1025+9G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.463+9G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.227+9G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2954+9G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.693+9G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 2.75e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 1.75e1
  variant carriers: 1042
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 3.25e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.25e1
  variant carriers: 690
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 2.5e0
  variant carriers: 465
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 9.75e1
  variant carriers: 653
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 1.25e1
  variant carriers: 869
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 2105
  bin: 7.5e0
  variant carriers: 414
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.25e1
  variant carriers: 93
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.75e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 6.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.25e1
  variant carriers: 47
num of homozygotes: 1063
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

5-1320738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320738
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320738
    reference: chr 5
allele count: 1
allele frequency: 4.968203497615263e-5
allele num: 20128
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.289C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.621C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1525C>T
  hgvsp: ENSP00000313854.5:p.Gln509Ter
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2947C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.456C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.686C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1417C>T
  hgvsp: ENSP00000315196.6:p.Gln473Ter
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.1018C>T
  hgvsp: ENSP00000423321.1:p.Gln340Ter
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.220C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.333C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8042
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln509Ter
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

5-1320757-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320757
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320757
    reference: chr 5
allele count: 9
allele frequency: 4.224955403248521e-4
allele num: 21302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1398G>A
  hgvsp: ENST00000320927.6:c.1398G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.270G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1506G>A
  hgvsp: ENST00000320895.5:c.1506G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.602G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.201G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2928G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.667G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.999G>A
  hgvsp: ENST00000507807.1:c.999G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.437G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.314G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5172
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val502Val
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-1320762-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320762
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320762
    reference: chr 5
allele count: 1
allele frequency: 4.643819076808767e-5
allele num: 21534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2923G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.196G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1501G>A
  hgvsp: ENSP00000313854.5:p.Val501Met
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.265G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.597G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.432G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.994G>A
  hgvsp: ENSP00000423321.1:p.Val332Met
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.309G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.662G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1393G>A
  hgvsp: ENSP00000315196.6:p.Val465Met
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val501Met
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

5-1320766-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320766
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320766
    reference: chr 5
allele count: 2
allele frequency: 9.188642837452908e-5
allele num: 21766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.593C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.990C>T
  hgvsp: ENST00000507807.1:c.990C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2919C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1497C>T
  hgvsp: ENST00000320895.5:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.658C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.305C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.261C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1389C>T
  hgvsp: ENST00000320927.6:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.192C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.428C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11804
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp499Asp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

5-1320770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320770
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320770
    reference: chr 5
allele count: 1
allele frequency: 4.557469692826542e-5
allele num: 21942
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2915G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.986G>A
  hgvsp: ENSP00000423321.1:p.Arg329Gln
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1493G>A
  hgvsp: ENSP00000313854.5:p.Arg498Gln
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.301G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.589G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.257G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.654G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.424G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1385G>A
  hgvsp: ENSP00000315196.6:p.Arg462Gln
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.188G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg498Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

5-1320784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320784
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320784
    reference: chr 5
allele count: 1
allele frequency: 4.491152429713464e-5
allele num: 22266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.243G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.640G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1371G>A
  hgvsp: ENST00000320927.6:c.1371G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.174G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2901G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.410G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1479G>A
  hgvsp: ENST00000320895.5:c.1479G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.972G>A
  hgvsp: ENST00000507807.1:c.972G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.575G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.287G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg493Arg
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

5-1320786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320786
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320786
    reference: chr 5
allele count: 2
allele frequency: 8.97827258035554e-5
allele num: 22276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.970C>T
  hgvsp: ENSP00000423321.1:p.Arg324Trp
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.285C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2899C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.172C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.408C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1477C>T
  hgvsp: ENSP00000313854.5:p.Arg493Trp
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.638C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1369C>T
  hgvsp: ENSP00000315196.6:p.Arg457Trp
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.241C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.573C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16963
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg493Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

5-1320793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320793
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320793
    reference: chr 5
allele count: 1
allele frequency: 4.471472008585226e-5
allele num: 22364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.566G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1470G>A
  hgvsp: ENST00000320895.5:c.1470G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1362G>A
  hgvsp: ENST00000320927.6:c.1362G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.165G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.963G>A
  hgvsp: ENST00000507807.1:c.963G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.234G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2892G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.631G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.278G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.401G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17529
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr490Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

5-1320800-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320800
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320800
    reference: chr 5
allele count: 1
allele frequency: 4.470672389127325e-5
allele num: 22368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.158T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.394T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.559T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1355T>C
  hgvsp: ENSP00000315196.6:p.Met452Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.624T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.956T>C
  hgvsp: ENSP00000423321.1:p.Met319Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.271T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2885T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1463T>C
  hgvsp: ENSP00000313854.5:p.Met488Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.518T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.227T>C
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met488Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

5-1320822-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320822
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320822
    reference: chr 5
allele count: 2
allele frequency: 9.002520705797624e-5
allele num: 22216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1333G>A
  hgvsp: ENSP00000315196.6:p.Val445Ile
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.934G>A
  hgvsp: ENSP00000423321.1:p.Val312Ile
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.372G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2863G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.602G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.136G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.496G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1441G>A
  hgvsp: ENSP00000313854.5:p.Val481Ile
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.249G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.537G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.205G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val481Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

5-1320826-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320826
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320826
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 22106
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1329T>C
  hgvsp: ENST00000320927.6:c.1329T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1437T>C
  hgvsp: ENST00000320895.5:c.1437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.368T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.132T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.598T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.492T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2859T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.201T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.930T>C
  hgvsp: ENST00000507807.1:c.930T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.533T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.245T>C
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp479Asp
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

5-1320829-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320829
    reference: chr 5
allele count: 1
allele frequency: 4.543389368468878e-5
allele num: 22010
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.198T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.927T>C
  hgvsp: ENST00000507807.1:c.927T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.242T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.489T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.530T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1326T>C
  hgvsp: ENST00000320927.6:c.1326T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2856T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1434T>C
  hgvsp: ENST00000320895.5:c.1434T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.365T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.595T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.129T>C
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile478Ile
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-1320860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320860
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320860
    reference: chr 5
allele count: 1
allele frequency: 5.043881771411278e-5
allele num: 19826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.181-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.112-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.472-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.578-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.513-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1417-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2839-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.348-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.225-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1309-14G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.910-14G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9833
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1526
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-1320861-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320861
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320861
    reference: chr 5
allele count: 1
allele frequency: 5.049484952534841e-5
allele num: 19804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1309-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.513-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.181-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.225-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.472-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.348-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2839-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.578-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1417-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.112-15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.910-15C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9737
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-1320869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320869
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320869
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 19488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2839-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.181-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.348-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.472-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1417-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.112-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.513-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.578-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.225-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1309-23C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.910-23C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9119
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS

5-1320880-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1320880
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1320880
    reference: chr 5
allele count: 6
allele frequency: 3.166895386889053e-4
allele num: 18946
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1417-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1309-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.578-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.348-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.112-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.472-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.910-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.513-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.181-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2839-34C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.225-34C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8367
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-1321699-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321699
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321699
    reference: chr 5
allele count: 1
allele frequency: 8.248647221855616e-6
allele num: 121232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+51C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+51C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

5-1321699-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321699
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321699
    reference: chr 5
allele count: 2
allele frequency: 1.649729444371123e-5
allele num: 121232
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+51C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+51C>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-1321703-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321703
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321703
    reference: chr 5
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+47T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+47T>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/5-1321704-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321704
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321704
    reference: chr 5
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+46G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+46G>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22982
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9039
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

5-1321710-GCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321710
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321708
    reference: chr 5
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+38_512+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+38_111+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+38_1416+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+38_1308+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+38_180+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+38_471+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+38_347+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+38_577+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+38_224+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+38_909+39delAG
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+38_2838+39delAG
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: GCT
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-1321726-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321726
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321726
    reference: chr 5
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+24A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+24A>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23145
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9240
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS

5-1321731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321731
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321731
    reference: chr 5
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+19G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+19G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

5-1321733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321733
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321733
    reference: chr 5
allele count: 1
allele frequency: 8.247014580721778e-6
allele num: 121256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+17G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+17G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

5-1321734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321734
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321734
    reference: chr 5
allele count: 2
allele frequency: 1.649457328538911e-5
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+16G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+16G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6491
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

5-1321735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321735
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321735
    reference: chr 5
allele count: 7
allele frequency: 5.773291105832674e-5
allele num: 121248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+15C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+15C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23210
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2982
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

5-1321739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321739
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321739
    reference: chr 5
allele count: 3
allele frequency: 2.473981956424931e-5
allele num: 121262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+11C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+11C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-1321740-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321740
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321740
    reference: chr 5
allele count: 21
allele frequency: 1.731873061951574e-4
allele num: 121256
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+10A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+10A>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23236
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

5-1321743-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321743
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321743
    reference: chr 5
allele count: 1
allele frequency: 8.246334504312833e-6
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+7G>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+7G>C
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1416+7G>C
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

5-1321746-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321746
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321746
    reference: chr 5
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838+4A>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909+4A>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1416+4A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

5-1321750-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321750
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321750
    reference: chr 5
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.180G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2838G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1416G>A
  hgvsp: ENST00000320895.5:c.1416G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.577G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.111G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.471G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.909G>A
  hgvsp: ENST00000507807.1:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.224G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.347G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1308G>A
  hgvsp: ENST00000320927.6:c.1308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.512G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4208
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1416G>A
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

5-1321756-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321756
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321756
    reference: chr 5
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.341C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.105C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.465C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.903C>G
  hgvsp: ENST00000507807.1:c.903C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.218C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2832C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.506C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1302C>G
  hgvsp: ENST00000320927.6:c.1302C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1410C>G
  hgvsp: ENST00000320895.5:c.1410C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.174C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.571C>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2978
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr470Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-1321757-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321757
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321757
    reference: chr 5
allele count: 2
allele frequency: 1.649103712132456e-5
allele num: 121278
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.104C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.173C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.505C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1409C>T
  hgvsp: ENSP00000313854.5:p.Thr470Ile
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.340C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2831C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.902C>T
  hgvsp: ENSP00000423321.1:p.Thr301Ile
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.464C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.217C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1301C>T
  hgvsp: ENSP00000315196.6:p.Thr434Ile
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.570C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr470Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

5-1321762-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321762
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321762
    reference: chr 5
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1404C>T
  hgvsp: ENST00000320895.5:c.1404C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.212C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.459C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2826C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1296C>T
  hgvsp: ENST00000320927.6:c.1296C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.897C>T
  hgvsp: ENST00000507807.1:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.565C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505605
  gene symbol: CLPTM1L
  hgvsc: ENST00000505605.1:n.386C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.168C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.99C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.500C>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.335C>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala468Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-1321782-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321782
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321782
    reference: chr 5
allele count: 2
allele frequency: 1.649593375233005e-5
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.480G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.315G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.148G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.877G>T
  hgvsp: ENSP00000423321.1:p.Ala293Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505605
  gene symbol: CLPTM1L
  hgvsc: ENST00000505605.1:n.366G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1276G>T
  hgvsp: ENSP00000315196.6:p.Ala426Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.439G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2806G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.79G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1384G>T
  hgvsp: ENSP00000313854.5:p.Ala462Ser
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.192G>T
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.545G>T
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala462Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-1321782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321782
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321782
    reference: chr 5
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.439G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.480G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.148G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.192G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2806G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.877G>A
  hgvsp: ENSP00000423321.1:p.Ala293Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505605
  gene symbol: CLPTM1L
  hgvsc: ENST00000505605.1:n.366G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1276G>A
  hgvsp: ENSP00000315196.6:p.Ala426Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.545G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1384G>A
  hgvsp: ENSP00000313854.5:p.Ala462Thr
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.79G>A
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.315G>A
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9237
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala462Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-1321798-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321798
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321798
    reference: chr 5
allele count: 3
allele frequency: 2.474716644944154e-5
allele num: 121226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.865-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1372-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.136-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.468-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2794-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1264-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.303-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.533-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.176T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.67-4T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.423T>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505605
  gene symbol: CLPTM1L
  hgvsc: ENST00000505605.1:n.350T>G
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1372-4T>G
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-1321798-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321798
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321798
    reference: chr 5
allele count: 1
allele frequency: 8.24905548314718e-6
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.176T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505605
  gene symbol: CLPTM1L
  hgvsc: ENST00000505605.1:n.350T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.303-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.468-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.533-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2794-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.865-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.136-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.67-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1372-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1264-4T>C
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.423T>C
  variant of: http://identifiers.org/hgnc/24308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1372-4T>C
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum

5-1321804-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1321804
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 1321804
    reference: chr 5
allele count: 1
allele frequency: 8.251097395953662e-6
allele num: 121196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505605
  gene symbol: CLPTM1L
  hgvsc: ENST00000505605.1:n.344C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000423321
  ensembl transcript: ENST00000507807
  gene symbol: CLPTM1L
  hgvsc: ENST00000507807.1:c.865-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000512451
  gene symbol: CLPTM1L
  hgvsc: ENST00000512451.1:n.170C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000505914
  gene symbol: CLPTM1L
  hgvsc: ENST00000505914.1:n.417C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000515719
  gene symbol: CLPTM1L
  hgvsc: ENST00000515719.1:n.67-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503534
  gene symbol: CLPTM1L
  hgvsc: ENST00000503534.1:n.303-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000313854
  ensembl transcript: ENST00000320895
  gene symbol: CLPTM1L
  hgvsc: ENST00000320895.5:c.1372-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl protein: ENSP00000315196
  ensembl transcript: ENST00000320927
  gene symbol: CLPTM1L
  hgvsc: ENST00000320927.6:c.1264-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000507195
  gene symbol: CLPTM1L
  hgvsc: ENST00000507195.1:n.468-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000503042
  gene symbol: CLPTM1L
  hgvsc: ENST00000503042.1:n.2794-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000511268
  gene symbol: CLPTM1L
  hgvsc: ENST00000511268.2:n.136-10C>G
  variant of: http://identifiers.org/hgnc/24308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000049656
  ensembl transcript: ENST00000506641
  gene symbol: CLPTM1L
  hgvsc: ENST00000506641.1:n.533-10C>G
  variant of: http://identifiers.org/hgnc/24308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34253
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.74089226573154e-5
allele num: 10266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.727579e6

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

FS
type: SiteQuality
SIO_000300: 1.785e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

QD
type: SiteQuality
SIO_000300: 1.239e1

GenotypeQuality
all individuals: 8601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4178
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.896356906292616e-4
allele num: 10266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

QD
type: SiteQuality
SIO_000300: 1.239e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

FS
type: SiteQuality
SIO_000300: 1.785e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

DP
type: SiteQuality
SIO_000300: 1.727579e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

GenotypeQuality
all individuals: 4180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34344
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1555
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8607
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

FS
type: SiteQuality
SIO_000300: 1.108e0

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

QD
type: SiteQuality
SIO_000300: 1.465e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

DP
type: SiteQuality
SIO_000300: 1.728025e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 4182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 1.068e0

VQSLOD
type: SiteQuality
SIO_000300: -1.291e0

DP
type: SiteQuality
SIO_000300: 1.729121e6

MQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQ
type: SiteQuality
SIO_000300: 5.614e1

QD
type: SiteQuality
SIO_000300: 9.07e0

GenotypeQuality
all individuals: 34423
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3916
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 124
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.021375884389583e-5
allele num: 66430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 5.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.729498e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

GenotypeQuality
all individuals: 124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1555
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8604
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4180
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505343971097396e-5
allele num: 66430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 1.251e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 1.729498e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e-1

GenotypeQuality
all individuals: 3912
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8617
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.010234798314269e-5
allele num: 66440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.774e0

DP
type: SiteQuality
SIO_000300: 1.730039e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.28e1

VQSLOD
type: SiteQuality
SIO_000300: 8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.114e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157943492357573e-4
allele num: 8636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQRankSum
type: SiteQuality
SIO_000300: 4.9e-2

DP
type: SiteQuality
SIO_000300: 1.730349e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -5.302e-1

FS
type: SiteQuality
SIO_000300: 9.98e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.255e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8613
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.149e1

DP
type: SiteQuality
SIO_000300: 1.730126e6

FS
type: SiteQuality
SIO_000300: 6.784e0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

BaseQRankSum
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SIO_000300: -3.869e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.12e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.475440222428174e-4
allele num: 8632
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.497e0

DP
type: SiteQuality
SIO_000300: 1.730776e6

InbreedingCoeff
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SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 5.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504800312998465e-5
allele num: 66454
num of homozygotes: 0

Latino
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allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.825e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.730415e6

BaseQRankSum
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SIO_000300: 1.6e0

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.856e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505026789476853e-5
allele num: 66444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e-1

QD
type: SiteQuality
SIO_000300: 9.93e0

VQSLOD
type: SiteQuality
SIO_000300: -4.033e-1

FS
type: SiteQuality
SIO_000300: 2.587e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.175e0

DP
type: SiteQuality
SIO_000300: 1.730487e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504936190705514e-5
allele num: 66448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.24e-1

DP
type: SiteQuality
SIO_000300: 1.730076e6

VQSLOD
type: SiteQuality
SIO_000300: -9.871e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 5.886e1

QD
type: SiteQuality
SIO_000300: 1.104e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505298651252408e-5
allele num: 66432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.729165e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -8.028999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.309e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.528584530724549e-4
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.674e0

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.035638394754417e-5
allele num: 65884
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
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allele num: 16420
num of homozygotes: 0

ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65844
num of homozygotes: 0

African
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allele frequency: 9.838646202282565e-5
allele num: 10164
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele num: 16420
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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SIO_000300: 1.373e0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

DP
type: SiteQuality
SIO_000300: 1.652604e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518741267237713e-5
allele num: 65844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.652604e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

QD
type: SiteQuality
SIO_000300: 1.319e1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.84e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 1.373e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.755034144633164e-5
allele num: 11422
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65784
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.682e0

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.621e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.015e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.637105e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542781326174828e-5
allele num: 64818
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.548229e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 9.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
SIO_000300: 1.29e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1894
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variant carriers: 53

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

African
type: Population
allele count: 53
allele frequency: 1.99698568198945e-2
allele num: 2654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.13e0

FS
type: SiteQuality
SIO_000300: 1.278e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.581e0

QD
type: SiteQuality
SIO_000300: 1.437e1

DP
type: SiteQuality
SIO_000300: 2.7271e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
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South Asian
type: Population
allele count: 1
allele frequency: 3.097893432465923e-4
allele num: 3228
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 2.74505e5

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.461560947091494e-4
allele num: 6842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 2.74505e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.67e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.736111111111111e-3
allele num: 576
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African
type: Population
allele count: 1
allele frequency: 3.748125937031484e-4
allele num: 2668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.711e0

FS
type: SiteQuality
SIO_000300: 4.573e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.79151e5

QD
type: SiteQuality
SIO_000300: 1.496e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 472

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 14

GenotypeQuality
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GenotypeQuality
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variant carriers: 6

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 312
allele frequency: 4.431818181818182e-2
allele num: 7040
num of homozygotes: 10

South Asian
type: Population
allele count: 90
allele frequency: 2.491694352159468e-2
allele num: 3612
num of homozygotes: 2

Latino
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allele count: 7
allele frequency: 2.023121387283237e-2
allele num: 346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 63
allele frequency: 6.645569620253164e-2
allele num: 948
num of homozygotes: 2

Other
type: Population
allele count: 14
allele frequency: 9.210526315789473e-2
allele num: 152
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African
type: Population
allele count: 21
allele frequency: 7.818317200297841e-3
allele num: 2686
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

DP
type: SiteQuality
SIO_000300: 2.87922e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.607e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1419
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7142
num of homozygotes: 0

South Asian
type: Population
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 3.711952487008166e-4
allele num: 2694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

QD
type: SiteQuality
SIO_000300: 1.294e1

DP
type: SiteQuality
SIO_000300: 2.92297e5

GenotypeQuality
all individuals: 228
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 1917
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.557544757033248e-4
allele num: 3910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.51e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.557e1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.458e0

DP
type: SiteQuality
SIO_000300: 2.94327e5

GenotypeQuality
all individuals: 1917
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 264
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.246e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-2

DP
type: SiteQuality
SIO_000300: 3.03495e5

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

GenotypeQuality
all individuals: 1918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5992
bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.279981760145919e-4
allele num: 4386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.774e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: -2.161e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

MQRankSum
type: SiteQuality
SIO_000300: -1.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

DP
type: SiteQuality
SIO_000300: 3.0681e5

QD
type: SiteQuality
SIO_000300: 7.73e0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 89

GenotypeQuality
all individuals: 1730
bin: 2.25e1
variant carriers: 59

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 75

GenotypeQuality
all individuals: 296
bin: 6.75e1
variant carriers: 68

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 65

GenotypeQuality
all individuals: 3551
bin: 7.5e0
variant carriers: 291

GenotypeQuality
all individuals: 5404
bin: 9.75e1
variant carriers: 4749

GenotypeQuality
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bin: 2.75e1
variant carriers: 76

GenotypeQuality
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bin: 3.25e1
variant carriers: 83

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 61

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 60

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 94

Latino
type: Population
allele count: 125
allele frequency: 3.396739130434783e-1
allele num: 368
num of homozygotes: 21

East Asian
type: Population
allele count: 204
allele frequency: 3.311688311688312e-1
allele num: 616
num of homozygotes: 36

European (Finnish)
type: Population
allele count: 613
allele frequency: 4.435600578871201e-1
allele num: 1382
num of homozygotes: 113

South Asian
type: Population
allele count: 1235
allele frequency: 2.34612462006079e-1
allele num: 5264
num of homozygotes: 122

African
type: Population
allele count: 1316
allele frequency: 4.788937409024746e-1
allele num: 2748
num of homozygotes: 313

Other
type: Population
allele count: 76
allele frequency: 3.877551020408163e-1
allele num: 196
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 2887
allele frequency: 3.573904431790047e-1
allele num: 8078
num of homozygotes: 444

QD
type: SiteQuality
SIO_000300: 2.037e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.429999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

FS
type: SiteQuality
SIO_000300: 7.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e-1

DP
type: SiteQuality
SIO_000300: 3.91816e5

VQSLOD
type: SiteQuality
SIO_000300: 5.68e0

GenotypeQuality
all individuals: 907
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
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variant carriers: 0

GenotypeQuality
all individuals: 257
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variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
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variant carriers: 0

GenotypeQuality
all individuals: 548
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GenotypeQuality
all individuals: 614
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variant carriers: 0

GenotypeQuality
all individuals: 181
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GenotypeQuality
all individuals: 105
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GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 190
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GenotypeQuality
all individuals: 132
bin: 5.25e1
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GenotypeQuality
all individuals: 272
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GenotypeQuality
all individuals: 2358
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.193317422434368e-4
allele num: 8380
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

QD
type: SiteQuality
SIO_000300: 5.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

VQSLOD
type: SiteQuality
SIO_000300: -1.282e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.356e0

DP
type: SiteQuality
SIO_000300: 3.80033e5

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1530
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 75
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 723
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variant carriers: 0

GenotypeQuality
all individuals: 9792
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GenotypeQuality
all individuals: 207
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variant carriers: 0

GenotypeQuality
all individuals: 295
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variant carriers: 0

GenotypeQuality
all individuals: 907
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 2367
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
all individuals: 194
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GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.525252525252525e-3
allele num: 396
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.81928390188892e-4
allele num: 7094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 6.970260223048327e-4
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.067e1

DP
type: SiteQuality
SIO_000300: 4.05324e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeQuality
all individuals: 10515
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 304
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 282
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GenotypeQuality
all individuals: 5461
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2365
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variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.153402537485582e-4
allele num: 8670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2788
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.19e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

MQRankSum
type: SiteQuality
SIO_000300: -4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 5.546e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.749e0

DP
type: SiteQuality
SIO_000300: 4.10929e5

QD
type: SiteQuality
SIO_000300: 1.659e1

GenotypeQuality
all individuals: 1503
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 128
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variant carriers: 0

GenotypeQuality
all individuals: 2367
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 73
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GenotypeQuality
all individuals: 320
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GenotypeQuality
all individuals: 152
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GenotypeQuality
all individuals: 665
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 806
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GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.289901534234028e-4
allele num: 8734
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

DP
type: SiteQuality
SIO_000300: 4.17764e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

FS
type: SiteQuality
SIO_000300: 1.981e0

QD
type: SiteQuality
SIO_000300: 1.382e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
all individuals: 116
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 64
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GenotypeQuality
all individuals: 575
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 2369
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GenotypeQuality
all individuals: 1638
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GenotypeQuality
all individuals: 12537
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GenotypeQuality
all individuals: 106
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GenotypeQuality
all individuals: 33
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GenotypeQuality
all individuals: 5946
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GenotypeQuality
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GenotypeQuality
all individuals: 829
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GenotypeQuality
all individuals: 160
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GenotypeQuality
all individuals: 286
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GenotypeQuality
all individuals: 322
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GenotypeQuality
all individuals: 45
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.573981415296641e-4
allele num: 2798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7476
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.181e0

MQRankSum
type: SiteQuality
SIO_000300: -6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.67e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

DP
type: SiteQuality
SIO_000300: 4.22432e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.68e-1

FS
type: SiteQuality
SIO_000300: 3.066e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

QD
type: SiteQuality
SIO_000300: 1.376e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.7e0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 2.5e0
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GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.119820828667413e-4
allele num: 8930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7636
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.196e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.98e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.668e1

FS
type: SiteQuality
SIO_000300: 2.894e0

DP
type: SiteQuality
SIO_000300: 4.35272e5

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 14
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.30821559392988e-4
allele num: 7644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.120322652924042e-4
allele num: 8926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.11e1

FS
type: SiteQuality
SIO_000300: 8.372999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.9e1

VQSLOD
type: SiteQuality
SIO_000300: -1.044e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.04e-2

DP
type: SiteQuality
SIO_000300: 4.36216e5

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
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variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2806
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.463054187192118e-3
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

FS
type: SiteQuality
SIO_000300: 3.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.82e-1

DP
type: SiteQuality
SIO_000300: 4.38725e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.131e0

QD
type: SiteQuality
SIO_000300: 1.152e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: -1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.09e-2

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
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variant carriers: 0

GenotypeQuality
all individuals: 16218
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GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 1413
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GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 38
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 2383
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6269
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.306165099268548e-4
allele num: 7656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.843e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

DP
type: SiteQuality
SIO_000300: 4.39251e5

FS
type: SiteQuality
SIO_000300: 4.1e0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e0

VQSLOD
type: SiteQuality
SIO_000300: -1.808e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.07e-2

QD
type: SiteQuality
SIO_000300: 7.5e0

GenotypeQuality
all individuals: 873
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 55
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 204
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GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 7.132667617689016e-4
allele num: 2804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.061e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.66e0

FS
type: SiteQuality
SIO_000300: 7.495e0

DP
type: SiteQuality
SIO_000300: 4.36568e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

QD
type: SiteQuality
SIO_000300: 1.459e1

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 873
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GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 4.33705e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.95e-2

QD
type: SiteQuality
SIO_000300: 5.28e0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.665e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 3.571428571428571e-4
allele num: 2800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.30485e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

FS
type: SiteQuality
SIO_000300: 2.928e0

MQRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.144e-1

QD
type: SiteQuality
SIO_000300: 1.507e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.88e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 301
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GenotypeQuality
all individuals: 301
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.607503607503608e-4
allele num: 2772
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.865e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.023e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

DP
type: SiteQuality
SIO_000300: 3.7558e5

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: -1.43e0

QD
type: SiteQuality
SIO_000300: 1.606e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.610108303249097e-4
allele num: 2770
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.91e1

FS
type: SiteQuality
SIO_000300: 7.092e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.556e0

DP
type: SiteQuality
SIO_000300: 3.73921e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.62e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.48e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

DP
type: SiteQuality
SIO_000300: 3.66605e5

QD
type: SiteQuality
SIO_000300: 1.505e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.836990595611285e-3
allele num: 638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.944012441679627e-4
allele num: 5144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 4.57e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.91e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.57e-2

DP
type: SiteQuality
SIO_000300: 3.56724e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.464e0

QD
type: SiteQuality
SIO_000300: 1.317e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 29304
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variant carriers: 0

GenotypeQuality
all individuals: 1968
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500960614793468e-5
allele num: 66624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
type: SiteQuality
SIO_000300: 1.066e1

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

DP
type: SiteQuality
SIO_000300: 2.089035e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001921229586936e-5
allele num: 66624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.089035e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66628
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ClippingRankSum
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SIO_000300: 1.04e-1

InbreedingCoeff
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MQRankSum
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DP
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VQSLOD
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.637625289128758e-5
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
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MQ
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ReadPosRankSum
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DP
type: SiteQuality
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.1e0

ClippingRankSum
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SIO_000300: 1.22e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 9.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5008254539997e-5
allele num: 66630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.68e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.996e1

QD
type: SiteQuality
SIO_000300: 1.827e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 2.091448e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.79e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.015e0

BaseQRankSum
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SIO_000300: 3.02e0

DP
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SIO_000300: 2.094087e6

InbreedingCoeff
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SIO_000300: 3.0e-4

ClippingRankSum
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ReadPosRankSum
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SIO_000300: -1.032e0

QD
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SIO_000300: 7.01e0

MQRankSum
type: SiteQuality
SIO_000300: -4.76e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.756e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
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SIO_000300: 1.069e1

InbreedingCoeff
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SIO_000300: -2.0e-4

BaseQRankSum
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SIO_000300: -2.892e0

FS
type: SiteQuality
SIO_000300: 2.404e0

DP
type: SiteQuality
SIO_000300: 2.09474e6

VQSLOD
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SIO_000300: -1.727e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.82e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.847e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

BaseQRankSum
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SIO_000300: -2.406e0

VQSLOD
type: SiteQuality
SIO_000300: -1.483e0

DP
type: SiteQuality
SIO_000300: 2.094802e6

GenotypeQuality
all individuals: 1963
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 2.761e1

VQSLOD
type: SiteQuality
SIO_000300: -2.924e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.035e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 2.095052e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 7.194e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.313743637204998e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.422480620155039e-4
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

BaseQRankSum
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SIO_000300: 3.59e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.095378e6

FS
type: SiteQuality
SIO_000300: 7.01e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.470615455807496e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
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MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.35e-1

DP
type: SiteQuality
SIO_000300: 2.095475e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.64e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.15144966684675e-4
allele num: 66636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
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allele num: 8644
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e-1

ClippingRankSum
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SIO_000300: -5.4e-2

InbreedingCoeff
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MQRankSum
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BaseQRankSum
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SIO_000300: 2.5e0

FS
type: SiteQuality
SIO_000300: 2.679e0

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 2.09624e6

VQSLOD
type: SiteQuality
SIO_000300: 2.16e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeDepth
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 1967
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.095347e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

VQSLOD
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SIO_000300: -1.374e0

FS
type: SiteQuality
SIO_000300: 1.1426e1

QD
type: SiteQuality
SIO_000300: 2.244e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

GenotypeDepth
all individuals: 88
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.628345850182938e-5
allele num: 10386
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 8.135999999999999e0

QD
type: SiteQuality
SIO_000300: 4.76e0

BaseQRankSum
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SIO_000300: -9.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.822e0

DP
type: SiteQuality
SIO_000300: 2.095545e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 306
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2431
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variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1446
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 3.681e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.24e-1

DP
type: SiteQuality
SIO_000300: 2.095809e6

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1977
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variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
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DP
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SIO_000300: 2.096109e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.581e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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MQRankSum
type: SiteQuality
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.887e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 1.729206294310911e-4
allele num: 11566
num of homozygotes: 0

South Asian
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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BaseQRankSum
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FS
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QD
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MQRankSum
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ClippingRankSum
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30685
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14867
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.57e-1

FS
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.174e1

DP
type: SiteQuality
SIO_000300: 2.096427e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

GenotypeDepth
all individuals: 169
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9293
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14864
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

QD
type: SiteQuality
SIO_000300: 1.37e1

DP
type: SiteQuality
SIO_000300: 2.095651e6

GenotypeDepth
all individuals: 4209
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6521
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14864
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.629999999999999e-1

FS
type: SiteQuality
SIO_000300: 3.89e-1

DP
type: SiteQuality
SIO_000300: 2.095651e6

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0