1-154920657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920657
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920657
    reference: chr 1
allele count: 2
allele frequency: 1.751804358489244e-5
allele num: 114168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.130C>T
  hgvsp: ENSP00000438584.1:p.Leu44Phe
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.76C>T
  hgvsp: ENSP00000440142.1:p.Leu26Phe
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.595C>T
  hgvsp: ENSP00000357448.3:p.Leu199Phe
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+45C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.508C>T
  hgvsp: ENSP00000357450.1:p.Leu170Phe
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.504C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*186C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu199Phe
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/1-154920661-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920661
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920661
    reference: chr 1
allele count: 1
allele frequency: 8.744927941793759e-6
allele num: 114352
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*182G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+41G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.504G>T
  hgvsp: ENSP00000357450.1:p.Met168Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.500G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.126G>T
  hgvsp: ENSP00000438584.1:p.Met42Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.72G>T
  hgvsp: ENSP00000440142.1:p.Met24Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.591G>T
  hgvsp: ENSP00000357448.3:p.Met197Ile
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7979
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41159
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4322
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met197Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

1-154920661-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920661
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920661
    reference: chr 1
allele count: 65
allele frequency: 5.684203162165944e-4
allele num: 114352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.126G>A
  hgvsp: ENSP00000438584.1:p.Met42Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.591G>A
  hgvsp: ENSP00000357448.3:p.Met197Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.72G>A
  hgvsp: ENSP00000440142.1:p.Met24Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*182G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.504G>A
  hgvsp: ENSP00000357450.1:p.Met168Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+41G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.500G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13705
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28662
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9664
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Met197Ile
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

1-154920665-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920665
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920665
    reference: chr 1
allele count: 1
allele frequency: 8.75457426505349e-6
allele num: 114226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.122A>G
  hgvsp: ENSP00000438584.1:p.Asn41Ser
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.500A>G
  hgvsp: ENSP00000357450.1:p.Asn167Ser
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.68A>G
  hgvsp: ENSP00000440142.1:p.Asn23Ser
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.587A>G
  hgvsp: ENSP00000357448.3:p.Asn196Ser
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*178A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+37A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.496A>G
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40559
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn196Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

1-154920668-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920668
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920668
    reference: chr 1
allele count: 1
allele frequency: 8.753961167428261e-6
allele num: 114234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.119T>C
  hgvsp: ENSP00000438584.1:p.Leu40Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.584T>C
  hgvsp: ENSP00000357448.3:p.Leu195Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*175T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.493T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.497T>C
  hgvsp: ENSP00000357450.1:p.Leu166Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.65T>C
  hgvsp: ENSP00000440142.1:p.Leu22Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+34T>C
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13771
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu195Pro
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

1-154920680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920680
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920680
    reference: chr 1
allele count: 1
allele frequency: 8.866663120001419e-6
allele num: 112782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.53T>C
  hgvsp: ENSP00000440142.1:p.Leu18Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.485T>C
  hgvsp: ENSP00000357450.1:p.Leu162Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.107T>C
  hgvsp: ENSP00000438584.1:p.Leu36Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.572T>C
  hgvsp: ENSP00000357448.3:p.Leu191Pro
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*163T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+22T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.481T>C
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25933
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu191Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-154920682-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920682
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920682
    reference: chr 1
allele count: 14
allele frequency: 1.245485116452858e-4
allele num: 112406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.479G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.51G>A
  hgvsp: ENST00000539880.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*161G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.105G>A
  hgvsp: ENST00000542459.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.570G>A
  hgvsp: ENST00000368463.3:c.570G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.483G>A
  hgvsp: ENST00000368465.1:c.483G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+20G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25455
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7901
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14058
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35352
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu190Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

1-154920687-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920687
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920687
    reference: chr 1
allele count: 185
allele frequency: 1.657290285591429e-3
allele num: 111628
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.100G>A
  hgvsp: ENSP00000438584.1:p.Gly34Arg
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.46G>A
  hgvsp: ENSP00000440142.1:p.Gly16Arg
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+15G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*156G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.565G>A
  hgvsp: ENSP00000357448.3:p.Gly189Arg
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.478G>A
  hgvsp: ENSP00000357450.1:p.Gly160Arg
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.474G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 24812
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7034
  bin: 3.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35415
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6365
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Gly189Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

1-154920688-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920688
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920688
    reference: chr 1
allele count: 3
allele frequency: 2.683795244314827e-5
allele num: 111782
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*155C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.473C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.45C>T
  hgvsp: ENST00000539880.1:c.45C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.564C>T
  hgvsp: ENST00000368463.3:c.564C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.99C>T
  hgvsp: ENST00000542459.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.477C>T
  hgvsp: ENST00000368465.1:c.477C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+14C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15198
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36335
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
hgvs: c.45C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

1-154920692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920692
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920692
    reference: chr 1
allele count: 2
allele frequency: 1.801477211313277e-5
allele num: 111020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*151C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-3C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.95C>T
  hgvsp: ENSP00000438584.1:p.Ala32Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+10C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.560C>T
  hgvsp: ENSP00000357448.3:p.Ala187Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.473C>T
  hgvsp: ENSP00000357450.1:p.Ala158Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.469C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23610
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala187Val
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP

1-154920698-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920698
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920698
    reference: chr 1
allele count: 2
allele frequency: 1.836210062431142e-5
allele num: 108920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.467A>T
  hgvsp: ENSP00000357450.1:p.Glu156Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-9A>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.554A>T
  hgvsp: ENSP00000357448.3:p.Glu185Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*145A>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.463A>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+4A>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.89A>T
  hgvsp: ENSP00000438584.1:p.Glu30Val
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7900
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10408
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu185Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-154920701-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920701
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920701
    reference: chr 1
allele count: 13
allele frequency: 1.203436273420721e-4
allele num: 108024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.460G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.464G>T
  hgvsp: ENSP00000357450.1:p.Gly155Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.86G>T
  hgvsp: ENSP00000438584.1:p.Gly29Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*142G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.551G>T
  hgvsp: ENSP00000357448.3:p.Gly184Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-12G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550+1G>T
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4141
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8490
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15717
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20422
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31507
  bin: 6.25e1
  variant carriers: 0
hgvs: c.550+1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/1-154920702-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920702
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920702
    reference: chr 1
allele count: 1
allele frequency: 9.29074456026906e-6
allele num: 107634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*141G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.463G>T
  hgvsp: ENSP00000357450.1:p.Gly155Cys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.550G>T
  hgvsp: ENSP00000357448.3:p.Gly184Cys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.85G>T
  hgvsp: ENSP00000438584.1:p.Gly29Cys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-13G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.550G>T
  hgvsp: ENSP00000357445.3:p.Gly184Cys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.459G>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5019
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly184Cys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

1-154920708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920708
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920708
    reference: chr 1
allele count: 1
allele frequency: 9.471490812653911e-6
allele num: 105580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.544G>A
  hgvsp: ENSP00000357445.3:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.453G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.457G>A
  hgvsp: ENSP00000357450.1:p.Ala153Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-19G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.544G>A
  hgvsp: ENSP00000357448.3:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*135G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.79G>A
  hgvsp: ENSP00000438584.1:p.Ala27Thr
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17227
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13317
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27155
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala182Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

1-154920715-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920715
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920715
    reference: chr 1
allele count: 2
allele frequency: 1.927710843373494e-5
allele num: 103750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.450G>C
  hgvsp: ENSP00000357450.1:p.Glu150Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.446G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.537G>C
  hgvsp: ENSP00000357448.3:p.Glu179Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-26G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.537G>C
  hgvsp: ENSP00000357445.3:p.Glu179Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*128G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.72G>C
  hgvsp: ENSP00000438584.1:p.Glu24Asp
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7980
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2916
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3333
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu179Asp
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

1-154920722-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920722
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920722
    reference: chr 1
allele count: 1
allele frequency: 9.812772304431448e-6
allele num: 101908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.530C>T
  hgvsp: ENSP00000357445.3:p.Ala177Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.65C>T
  hgvsp: ENSP00000438584.1:p.Ala22Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.443C>T
  hgvsp: ENSP00000357450.1:p.Ala148Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.530C>T
  hgvsp: ENSP00000357448.3:p.Ala177Val
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.439C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-33C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*121C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16333
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15931
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23786
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala177Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/1-154920732-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920732
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920732
    reference: chr 1
allele count: 1
allele frequency: 1.002667094471294e-5
allele num: 99734
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.520G>T
  hgvsp: ENSP00000357445.3:p.Val174Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.429G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.55G>T
  hgvsp: ENSP00000438584.1:p.Val19Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*111G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-43G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.520G>T
  hgvsp: ENSP00000357448.3:p.Val174Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.433G>T
  hgvsp: ENSP00000357450.1:p.Val145Leu
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13131
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val174Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-154920739-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920739
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920739
    reference: chr 1
allele count: 1
allele frequency: 1.02992975879045e-5
allele num: 97094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-50G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.422G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.426G>A
  hgvsp: ENST00000368465.1:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*104G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.513G>A
  hgvsp: ENST00000368463.3:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.513G>A
  hgvsp: ENST00000368460.3:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.48G>A
  hgvsp: ENST00000542459.1:c.48G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10793
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14321
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20660
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln171Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

1-154920743-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920743
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920743
    reference: chr 1
allele count: 1
allele frequency: 1.044299170826458e-5
allele num: 95758
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*100C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.44C>T
  hgvsp: ENSP00000438584.1:p.Pro15Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-54C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.509C>T
  hgvsp: ENSP00000357445.3:p.Pro170Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.509C>T
  hgvsp: ENSP00000357448.3:p.Pro170Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.422C>T
  hgvsp: ENSP00000357450.1:p.Pro141Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.418C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13935
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19180
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro170Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

1-154920749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920749
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920749
    reference: chr 1
allele count: 3
allele frequency: 3.285870755750274e-5
allele num: 91300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.38G>A
  hgvsp: ENSP00000438584.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.503G>A
  hgvsp: ENSP00000357448.3:p.Gly168Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.503G>A
  hgvsp: ENSP00000357445.3:p.Gly168Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*94G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.412G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-60G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.416G>A
  hgvsp: ENSP00000357450.1:p.Gly139Asp
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7798
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14063
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly168Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

1-154920751-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920751
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920751
    reference: chr 1
allele count: 3
allele frequency: 3.274322760908952e-5
allele num: 91622
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.414C>T
  hgvsp: ENST00000368465.1:c.414C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.501C>T
  hgvsp: ENST00000368460.3:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-62C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.501C>T
  hgvsp: ENST00000368463.3:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*92C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.410C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.36C>T
  hgvsp: ENST00000542459.1:c.36C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13022
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13690
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13847
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19695
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4486
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala167Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff

1-154920752-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920752
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920752
    reference: chr 1
allele count: 11
allele frequency: 1.202527494151344e-4
allele num: 91474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.35C>A
  hgvsp: ENSP00000438584.1:p.Ala12Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.413C>A
  hgvsp: ENSP00000357450.1:p.Ala138Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.500C>A
  hgvsp: ENSP00000357445.3:p.Ala167Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.409C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.500C>A
  hgvsp: ENSP00000357448.3:p.Ala167Asp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*91C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-63C>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9628
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13858
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13686
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19823
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16204
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala167Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

1-154920753-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920753
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920753
    reference: chr 1
allele count: 1
allele frequency: 1.106880368369787e-5
allele num: 90344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.499G>A
  hgvsp: ENSP00000357448.3:p.Ala167Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.408G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*90G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.499G>A
  hgvsp: ENSP00000357445.3:p.Ala167Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.412G>A
  hgvsp: ENSP00000357450.1:p.Ala138Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-64G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.34G>A
  hgvsp: ENSP00000438584.1:p.Ala12Thr
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9717
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3969
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4516
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2870
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala167Thr
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

1-154920754-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920754
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920754
    reference: chr 1
allele count: 1
allele frequency: 1.104240282685512e-5
allele num: 90560
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.498G>A
  hgvsp: ENST00000368463.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.498G>A
  hgvsp: ENST00000368460.3:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.33G>A
  hgvsp: ENST00000542459.1:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.407G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.411G>A
  hgvsp: ENST00000368465.1:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-65G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14617
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1793
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu166Glu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

1-154920755-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920755
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920755
    reference: chr 1
allele count: 61
allele frequency: 6.785618937438818e-4
allele num: 89896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.497A>C
  hgvsp: ENSP00000357445.3:p.Glu166Ala
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.410A>C
  hgvsp: ENSP00000357450.1:p.Glu137Ala
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.497A>C
  hgvsp: ENSP00000357448.3:p.Glu166Ala
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.32A>C
  hgvsp: ENSP00000438584.1:p.Glu11Ala
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*88A>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-66A>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.406A>C
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13506
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13851
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7231
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13850
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3868
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19516
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu166Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

1-154920756-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920756
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920756
    reference: chr 1
allele count: 1
allele frequency: 1.110395522885252e-5
allele num: 90058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*87G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.409G>A
  hgvsp: ENSP00000357450.1:p.Glu137Lys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.496G>A
  hgvsp: ENSP00000357448.3:p.Glu166Lys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-67G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.31G>A
  hgvsp: ENSP00000438584.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.496G>A
  hgvsp: ENSP00000357445.3:p.Glu166Lys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.405G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2760
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1590
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu166Lys
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD

1-154920759-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920759
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920759
    reference: chr 1
allele count: 25
allele frequency: 2.779754492083259e-4
allele num: 89936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.28C>T
  hgvsp: ENSP00000438584.1:p.Arg10Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*84C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-70C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.493C>T
  hgvsp: ENSP00000357448.3:p.Arg165Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.406C>T
  hgvsp: ENSP00000357450.1:p.Arg136Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.402C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.493C>T
  hgvsp: ENSP00000357445.3:p.Arg165Trp
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13697
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 8801
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14233
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7579
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13920
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16309
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Arg165Trp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

1-154920763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920763
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920763
    reference: chr 1
allele count: 1
allele frequency: 1.118518187105722e-5
allele num: 89404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*80G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.24G>A
  hgvsp: ENST00000542459.1:c.24G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.398G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.402G>A
  hgvsp: ENST00000368465.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.489G>A
  hgvsp: ENST00000368463.3:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-74G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.489G>A
  hgvsp: ENST00000368460.3:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15147
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg163Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

1-154920764-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920764
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920764
    reference: chr 1
allele count: 2
allele frequency: 2.2383382576775e-5
allele num: 89352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.488G>A
  hgvsp: ENSP00000357445.3:p.Arg163Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.488G>A
  hgvsp: ENSP00000357448.3:p.Arg163Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.23G>A
  hgvsp: ENSP00000438584.1:p.Arg8Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.397G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.401G>A
  hgvsp: ENSP00000357450.1:p.Arg134Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-75G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6713
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg163Gln
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

1-154920765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920765
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920765
    reference: chr 1
allele count: 24
allele frequency: 2.688292486222501e-4
allele num: 89276
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.487C>T
  hgvsp: ENSP00000357448.3:p.Arg163Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.487C>T
  hgvsp: ENSP00000357445.3:p.Arg163Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.22C>T
  hgvsp: ENSP00000438584.1:p.Arg8Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.400C>T
  hgvsp: ENSP00000357450.1:p.Arg134Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.396C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-76C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13158
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6288
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8276
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16156
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20232
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21856
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg163Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

1-154920773-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920773
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920773
    reference: chr 1
allele count: 3
allele frequency: 3.408781019907281e-5
allele num: 88008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.392G>A
  hgvsp: ENSP00000357450.1:p.Arg131Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-84G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.479G>A
  hgvsp: ENSP00000357448.3:p.Arg160Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*70G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.14G>A
  hgvsp: ENSP00000438584.1:p.Arg5Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.479G>A
  hgvsp: ENSP00000357445.3:p.Arg160Gln
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.388G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8100
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg160Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

1-154920774-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920774
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920774
    reference: chr 1
allele count: 8
allele frequency: 9.112032438835482e-5
allele num: 87796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.13C>T
  hgvsp: ENSP00000438584.1:p.Arg5Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*69C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.391C>T
  hgvsp: ENSP00000357450.1:p.Arg131Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-85C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.478C>T
  hgvsp: ENSP00000357448.3:p.Arg160Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.478C>T
  hgvsp: ENSP00000357445.3:p.Arg160Trp
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.387C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12293
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18652
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8125
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg160Trp
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/1-154920775-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920775
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920775
    reference: chr 1
allele count: 2
allele frequency: 2.284826467429799e-5
allele num: 87534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-86G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.390G>T
  hgvsp: ENST00000368465.1:c.390G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.12G>T
  hgvsp: ENST00000542459.1:c.12G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.477G>T
  hgvsp: ENST00000368460.3:c.477G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*68G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.386G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.477G>T
  hgvsp: ENST00000368463.3:c.477G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18526
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu159Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

1-154920776-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920776
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920775
    reference: chr 1
allele count: 1
allele frequency: 1.142308834616527e-5
allele num: 87542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*66delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.475delC
  hgvsp: ENSP00000357448.3:p.Leu159CysfsTer91
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.475delC
  hgvsp: ENSP00000357445.3:p.Leu159CysfsTer60
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.388delC
  hgvsp: ENSP00000357450.1:p.Leu130CysfsTer91
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.384delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-88delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.10delC
  hgvsp: ENSP00000438584.1:p.Leu4CysfsTer91
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15860
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu159CysfsTer91
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: AG
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

1-154920783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920783
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920783
    reference: chr 1
allele count: 2
allele frequency: 2.338798325420399e-5
allele num: 85514
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.382G>A
  hgvsp: ENSP00000357450.1:p.Glu128Lys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.4G>A
  hgvsp: ENSP00000438584.1:p.Glu2Lys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-94G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.378G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.469G>A
  hgvsp: ENSP00000357448.3:p.Glu157Lys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.469G>A
  hgvsp: ENSP00000357445.3:p.Glu157Lys
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18382
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23071
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
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genotype quality: GenotypeQuality
  all individuals: 928
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 24721
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu157Lys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

1-154920784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920784
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920784
    reference: chr 1
allele count: 1
allele frequency: 1.174232638970433e-5
allele num: 85162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.377G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.381G>A
  hgvsp: ENSP00000357450.1:p.Met127Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-95G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.468G>A
  hgvsp: ENSP00000357448.3:p.Met156Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.3G>A
  hgvsp: ENSP00000438584.1:p.Met1?
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.468G>A
  hgvsp: ENSP00000357445.3:p.Met156Ile
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*59G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16960
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12480
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
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genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25015
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

1-154920789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920789
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920789
    reference: chr 1
allele count: 1
allele frequency: 1.200393729143159e-5
allele num: 83306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.376G>A
  hgvsp: ENSP00000357450.1:p.Asp126Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*54G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-3G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.463G>A
  hgvsp: ENSP00000357445.3:p.Asp155Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-100G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.463G>A
  hgvsp: ENSP00000357448.3:p.Asp155Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.372G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17262
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26182
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp155Asn
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/1-154920792-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920792
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920792
    reference: chr 1
allele count: 1
allele frequency: 1.215982878961064e-5
allele num: 82238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.369G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*51G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-103G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.460G>T
  hgvsp: ENSP00000357445.3:p.Val154Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.373G>T
  hgvsp: ENSP00000357450.1:p.Val125Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-6G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.460G>T
  hgvsp: ENSP00000357448.3:p.Val154Leu
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16738
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val154Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

1-154920792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920792
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920792
    reference: chr 1
allele count: 2
allele frequency: 2.431965757922128e-5
allele num: 82238
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.460G>A
  hgvsp: ENSP00000357448.3:p.Val154Met
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-103G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.373G>A
  hgvsp: ENSP00000357450.1:p.Val125Met
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.369G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.460G>A
  hgvsp: ENSP00000357445.3:p.Val154Met
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*51G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16738
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val154Met
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

1-154920795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920795
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920795
    reference: chr 1
allele count: 2
allele frequency: 2.482683284093448e-5
allele num: 80558
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.457G>A
  hgvsp: ENSP00000357448.3:p.Asp153Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.366G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.370G>A
  hgvsp: ENSP00000357450.1:p.Asp124Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.457G>A
  hgvsp: ENSP00000357445.3:p.Asp153Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-106G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-9G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15908
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13779
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18895
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19339
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
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genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp153Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

1-154920796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920796
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920796
    reference: chr 1
allele count: 3
allele frequency: 3.734222908212801e-5
allele num: 80338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-107C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.456C>T
  hgvsp: ENST00000368463.3:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.365C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.456C>T
  hgvsp: ENST00000368460.3:c.456C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.369C>T
  hgvsp: ENST00000368465.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*47C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16079
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2811
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 18970
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2431
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20119
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr152Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-154920804-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920804
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920804
    reference: chr 1
allele count: 2
allele frequency: 2.601862933860644e-5
allele num: 76868
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.357G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-115G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-18G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.448G>A
  hgvsp: ENSP00000357445.3:p.Asp150Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*39G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.448G>A
  hgvsp: ENSP00000357448.3:p.Asp150Asn
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.361G>A
  hgvsp: ENSP00000357450.1:p.Asp121Asn
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13989
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17965
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp150Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

1-154920805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920805
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920805
    reference: chr 1
allele count: 1
allele frequency: 1.323591698432867e-5
allele num: 75552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-116C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.447C>T
  hgvsp: ENST00000368460.3:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.360C>T
  hgvsp: ENST00000368465.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-19C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*38C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.447C>T
  hgvsp: ENST00000368463.3:c.447C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.356C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13129
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp149Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

1-154920811-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920811
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920811
    reference: chr 1
allele count: 1
allele frequency: 1.410835214446953e-5
allele num: 70880
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.441C>A
  hgvsp: ENSP00000357448.3:p.Ser147Arg
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.354C>A
  hgvsp: ENSP00000357450.1:p.Ser118Arg
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.350C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*32C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.441C>A
  hgvsp: ENSP00000357445.3:p.Ser147Arg
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-25C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-122C>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17178
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2718
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2300
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser147Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

1-154920812-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920812
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920812
    reference: chr 1
allele count: 1
allele frequency: 1.416189882739478e-5
allele num: 70612
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.440G>C
  hgvsp: ENSP00000357448.3:p.Ser147Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.353G>C
  hgvsp: ENSP00000357450.1:p.Ser118Thr
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-123G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.349G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-26G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*31G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.440G>C
  hgvsp: ENSP00000357445.3:p.Ser147Thr
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22705
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser147Thr
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

1-154920821-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920821
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920821
    reference: chr 1
allele count: 1
allele frequency: 1.551253412757508e-5
allele num: 64464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.431G>A
  hgvsp: ENSP00000357445.3:p.Arg144His
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.431G>A
  hgvsp: ENSP00000357448.3:p.Arg144His
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.344G>A
  hgvsp: ENSP00000357450.1:p.Arg115His
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-35G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.340G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-132G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18334
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36643
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8850
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg144His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

1-154920822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920822
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920822
    reference: chr 1
allele count: 109
allele frequency: 1.693440636360812e-3
allele num: 64366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-133C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.430C>T
  hgvsp: ENSP00000357445.3:p.Arg144Cys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.343C>T
  hgvsp: ENSP00000357450.1:p.Arg115Cys
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.339C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-36C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.430C>T
  hgvsp: ENSP00000357448.3:p.Arg144Cys
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 24761
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18333
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 7309
  bin: 2.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3405
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Arg144Cys
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

1-154920845-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920845
    reference: chr 1
allele count: 1
allele frequency: 2.125127507650459e-5
allele num: 47056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-3T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: stop_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.442T>C
  hgvsp: ENSP00000432543.1:p.Ter148GlnextTer?
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-3T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-156T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-3T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-3T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-3T>C
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: stop lost
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 17785
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ter148GlnextTer?
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

1-154920845-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920845
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920844
    reference: chr 1
allele count: 1
allele frequency: 2.125127507650459e-5
allele num: 47056
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-4delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-157delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.441delC
  hgvsp: ENSP00000432543.1:p.Ter148SerfsTer13
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-4delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-4delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-4delC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-4delC
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17785
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36331
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ter148SerfsTer13
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: AG
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

1-154920847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920847
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920847
    reference: chr 1
allele count: 1
allele frequency: 2.170327285354631e-5
allele num: 46076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-5C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-158C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-5C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-5C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-5C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.440C>T
  hgvsp: ENSP00000432543.1:p.Pro147Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-5C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17481
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36431
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro147Leu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

1-154920850-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920850
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920850
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 43292
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-8T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-8T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-8T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-8T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.437T>C
  hgvsp: ENSP00000432543.1:p.Phe146Ser
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-8T>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-161T>C
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26534
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12554
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Phe146Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

1-154920856-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920856
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920856
    reference: chr 1
allele count: 2
allele frequency: 5.689253001080958e-5
allele num: 35154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-167G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-14G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-14G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-14G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-14G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.431G>C
  hgvsp: ENSP00000432543.1:p.Cys144Ser
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-14G>C
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13792
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15853
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Cys144Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ

1-154920883-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920883
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920883
    reference: chr 1
allele count: 1
allele frequency: 6.023370678231538e-5
allele num: 16602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-41C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-41C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-194C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-41C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-6C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-41C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-41C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20341
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 6.75e1
  variant carriers: 1
hgvs: c.410-6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

1-154920888-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920888
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920888
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 15860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-11C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-46C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-46C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-46C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-46C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-199C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-46C>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19563
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30382
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30497
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/1-154920897-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920897
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 12672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-208G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-55G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-55G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-55G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-20G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-55G>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-55G>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17275
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

1-154920897-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920897
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920897
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 12672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-55G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-208G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-55G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-55G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-20G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-55G>C
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-55G>C
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33094
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17275
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3236
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13722
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32470
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

1-154920903-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920903
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920903
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 11244
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-61C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-26C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-61C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-61C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-61C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-61C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-214C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 16251
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

1-154920908-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920908
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920908
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 9894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-66C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-31C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-66C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-66C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-219C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-66C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-66C>G
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15549
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

1-154920913-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920913
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920913
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 9346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-71A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-71A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-71A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-224A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-71A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-71A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-36A>G
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15430
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4646
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

1-154920924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920924
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920924
    reference: chr 1
allele count: 3
allele frequency: 3.696402168555939e-4
allele num: 8116
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.410-82G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.410-82G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-56-82G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.319-82G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.44-235G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.323-82G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.410-47G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34276
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15453
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2583
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28855
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

1-154920926-C-CAGGGAGGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154920926
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154920934
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 7952
alternate allele: CAGGGAGGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4742
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7949
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28091
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

1-154923668-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923668
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923668
    reference: chr 1
allele count: 2
allele frequency: 1.702011777921503e-5
allele num: 117508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.409+40G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.318+40G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.409+40G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.322+40G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2487G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-57+40G>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.409+40G>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum

1-154923669-TAGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923669
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923666
    reference: chr 1
allele count: 1
allele frequency: 8.499354049092269e-6
allele num: 117656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.409+36_409+38delTCT
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.409+36_409+38delTCT
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.409+36_409+38delTCT
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.322+36_322+38delTCT
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-57+36_-57+38delTCT
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.318+36_318+38delTCT
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2483_43+2485delTCT
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22251
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21308
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: TAGA
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

1-154923674-GGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923674
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923672
    reference: chr 1
allele count: 1
allele frequency: 8.483203257550051e-6
allele num: 117880
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-57+32_-57+33delTC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2479_43+2480delTC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.322+32_322+33delTC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.318+32_318+33delTC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.409+32_409+33delTC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.409+32_409+33delTC
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.409+32_409+33delTC
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24952
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: GGA
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

1-154923675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923675
    reference: chr 1
allele count: 1
allele frequency: 8.47802495930548e-6
allele num: 117952
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.409+33C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-57+33C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.322+33C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.318+33C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.409+33C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2480C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.409+33C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25159
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

1-154923675-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923675
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923675
    reference: chr 1
allele count: 1
allele frequency: 8.47802495930548e-6
allele num: 117952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.409+33C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.409+33C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.409+33C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.318+33C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-57+33C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.322+33C>A
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2480C>A
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3331
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS

1-154923677-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923677
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923677
    reference: chr 1
allele count: 2
allele frequency: 1.693508780843029e-5
allele num: 118098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.409+31C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.322+31C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.409+31C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2478C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.409+31C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-57+31C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.318+31C>G
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5822
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1693
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

1-154923714-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923714
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923714
    reference: chr 1
allele count: 1
allele frequency: 8.300408380092301e-6
allele num: 120476
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.403A>G
  hgvsp: ENSP00000432543.1:p.Lys135Glu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2441A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.403A>G
  hgvsp: ENSP00000357445.3:p.Lys135Glu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.312A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.316A>G
  hgvsp: ENSP00000357450.1:p.Lys106Glu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000493133
  gene symbol: PBXIP1
  hgvsc: ENST00000493133.1:n.698A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-63A>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.403A>G
  hgvsp: ENSP00000357448.3:p.Lys135Glu
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28283
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5052
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys135Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

1-154923715-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923715
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923715
    reference: chr 1
allele count: 2
allele frequency: 1.659971448491086e-5
allele num: 120484
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.402C>G
  hgvsp: ENST00000368463.3:c.402C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.402C>G
  hgvsp: ENST00000490230.1:c.402C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.315C>G
  hgvsp: ENST00000368465.1:c.315C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-64C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.311C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000493133
  gene symbol: PBXIP1
  hgvsc: ENST00000493133.1:n.697C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.402C>G
  hgvsp: ENST00000368460.3:c.402C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2440C>G
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro134Pro
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

1-154923722-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923722
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923722
    reference: chr 1
allele count: 0
allele frequency: 0.0e0
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-71C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000493133
  gene symbol: PBXIP1
  hgvsc: ENST00000493133.1:n.690C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.304C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.308C>T
  hgvsp: ENSP00000357450.1:p.Ser103Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.395C>T
  hgvsp: ENSP00000357448.3:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.395C>T
  hgvsp: ENSP00000357445.3:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.395C>T
  hgvsp: ENSP00000432543.1:p.Ser132Leu
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2433C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16070
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27321
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3624
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser132Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

1-154923726-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923726
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923726
    reference: chr 1
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-75C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000493133
  gene symbol: PBXIP1
  hgvsc: ENST00000493133.1:n.686C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.300C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.391C>G
  hgvsp: ENSP00000357448.3:p.Pro131Ala
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.391C>G
  hgvsp: ENSP00000357445.3:p.Pro131Ala
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.304C>G
  hgvsp: ENSP00000357450.1:p.Pro102Ala
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2429C>G
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.391C>G
  hgvsp: ENSP00000432543.1:p.Pro131Ala
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3632
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro131Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

1-154923729-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 154923729
    reference: chr 1
  end: Position
    type: ExactPosition
    position: 154923729
    reference: chr 1
allele count: 1
allele frequency: 8.275131574592036e-6
allele num: 120844
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357448
  ensembl transcript: ENST00000368463
  gene symbol: PBXIP1
  hgvsc: ENST00000368463.3:c.388C>T
  hgvsp: ENST00000368463.3:c.388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357450
  ensembl transcript: ENST00000368465
  gene symbol: PBXIP1
  hgvsc: ENST00000368465.1:c.301C>T
  hgvsp: ENST00000368465.1:c.301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000440142
  ensembl transcript: ENST00000539880
  gene symbol: PBXIP1
  hgvsc: ENST00000539880.1:c.43+2426C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000498553
  gene symbol: PBXIP1
  hgvsc: ENST00000498553.1:n.297C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000432543
  ensembl transcript: ENST00000490230
  gene symbol: PBXIP1
  hgvsc: ENST00000490230.1:c.388C>T
  hgvsp: ENST00000490230.1:c.388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000357445
  ensembl transcript: ENST00000368460
  gene symbol: PBXIP1
  hgvsc: ENST00000368460.3:c.388C>T
  hgvsp: ENST00000368460.3:c.388C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000163346
  ensembl protein: ENSP00000438584
  ensembl transcript: ENST00000542459
  gene symbol: PBXIP1
  hgvsc: ENST00000542459.1:c.-78C>T
  variant of: http://identifiers.org/hgnc/21199
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000163346
  ensembl transcript: ENST00000493133
  gene symbol: PBXIP1
  hgvsc: ENST00000493133.1:n.683C>T
  variant of: http://identifiers.org/hgnc/21199
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Leu130Leu
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.1187624750499e-5
allele num: 64128
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.16e0

VQSLOD
type: SiteQuality
SIO_000300: -1.015e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.52e-1

DP
type: SiteQuality
SIO_000300: 1.53188e6

MQRankSum
type: SiteQuality
SIO_000300: -6.52e-1

QD
type: SiteQuality
SIO_000300: 8.91e0

GenotypeQuality
all individuals: 1813
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13102
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.978048293753742e-5
allele num: 10022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.351e0

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.531203e6

GenotypeQuality
all individuals: 7979
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 60

GenotypeQuality
all individuals: 1476
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variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10022
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.775008775008775e-5
allele num: 11396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6332
num of homozygotes: 0

South Asian
type: Population
allele count: 64
allele frequency: 4.88475041978324e-3
allele num: 13102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64124
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

DP
type: SiteQuality
SIO_000300: 1.531203e6

QD
type: SiteQuality
SIO_000300: 1.089e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.351e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeQuality
all individuals: 1788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.564308731971342e-5
allele num: 63926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.279e0

DP
type: SiteQuality
SIO_000300: 1.522292e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.833e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.85e-1

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40459
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565876421032852e-5
allele num: 63862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13470
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e0

DP
type: SiteQuality
SIO_000300: 1.518773e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.909e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

VQSLOD
type: SiteQuality
SIO_000300: 6.909999999999999e-1

FS
type: SiteQuality
SIO_000300: 1.935e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36874
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variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6000
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025851456709069e-4
allele num: 9748
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13914
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.205e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.458278e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.59e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: -1.021e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeQuality
all individuals: 646
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6823
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 1565
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
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variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.236350276348998e-4
allele num: 62602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

FS
type: SiteQuality
SIO_000300: 5.824e0

DP
type: SiteQuality
SIO_000300: 1.443479e6

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 284
bin: 9.75e1
variant carriers: 184

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 324
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 98
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GenotypeQuality
all individuals: 498
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.230125523012552e-4
allele num: 9560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.098239636570131e-5
allele num: 14088
num of homozygotes: 0

Latino
type: Population
allele count: 40
allele frequency: 3.664345914254306e-3
allele num: 10916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 134
allele frequency: 2.155935257585996e-3
allele num: 62154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 6.297229219143577e-3
allele num: 794
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e0

DP
type: SiteQuality
SIO_000300: 1.416135e6

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.37e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1536
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 317
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GenotypeQuality
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GenotypeQuality
all individuals: 767
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 474
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GenotypeQuality
all individuals: 1441
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.409443269908386e-4
allele num: 14190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.60818243221511e-5
allele num: 62182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

QD
type: SiteQuality
SIO_000300: 1.326e1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

FS
type: SiteQuality
SIO_000300: 2.786e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

DP
type: SiteQuality
SIO_000300: 1.412255e6

GenotypeQuality
all individuals: 569
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
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GenotypeQuality
all individuals: 1766
bin: 3.25e1
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GenotypeQuality
all individuals: 1093
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GenotypeQuality
all individuals: 394
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GenotypeQuality
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GenotypeQuality
all individuals: 113
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 401
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.447980416156671e-4
allele num: 8170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.203e0

FS
type: SiteQuality
SIO_000300: 1.081e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.89e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

DP
type: SiteQuality
SIO_000300: 1.381464e6

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.307315782510914e-5
allele num: 60472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7998
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.322518e6

FS
type: SiteQuality
SIO_000300: 3.645e0

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.902e0

QD
type: SiteQuality
SIO_000300: 1.144e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.004170141784821e-5
allele num: 59950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 1.826817683595177e-3
allele num: 5474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.295775e6

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 9.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

FS
type: SiteQuality
SIO_000300: 3.431e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e-1

GenotypeQuality
all individuals: 31002
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 9.759906304899473e-5
allele num: 10246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.618e0

QD
type: SiteQuality
SIO_000300: 1.231e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.751e0

DP
type: SiteQuality
SIO_000300: 1.286261e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.36e-1

GenotypeQuality
all individuals: 1055
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2972
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GenotypeQuality
all individuals: 65
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.708467163261122e-5
allele num: 58532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14464
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.198e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

FS
type: SiteQuality
SIO_000300: 3.413e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 1.225738e6

MQRankSum
type: SiteQuality
SIO_000300: -6.99e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 663
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1519
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variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 1
allele frequency: 1.040149781568546e-4
allele num: 9614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14470
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.141031492469192e-4
allele num: 8764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57476
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

DP
type: SiteQuality
SIO_000300: 1.176018e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.151e1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.906077348066299e-5
allele num: 14480
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.285e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.238e0

VQSLOD
type: SiteQuality
SIO_000300: -1.895e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.359e0

DP
type: SiteQuality
SIO_000300: 1.140076e6

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 55234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.964758322886195e-5
allele num: 14358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.163e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.426e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.66e-1

FS
type: SiteQuality
SIO_000300: 5.993e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 1.099052e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14174
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.86219739292365e-5
allele num: 53700
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.968e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.95e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.055087e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.888645463473597e-5
allele num: 52948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.677e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
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MQRankSum
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DP
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VQSLOD
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QD
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ClippingRankSum
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SIO_000300: 9.2e-2

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 50458
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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East Asian
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allele frequency: 4.505857614899369e-4
allele num: 6658
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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DP
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 50646
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Latino
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allele num: 8054
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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MQRankSum
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ClippingRankSum
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VQSLOD
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DP
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 1.580090855224175e-4
allele num: 50630
num of homozygotes: 0

African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 3
allele frequency: 7.320644216691069e-4
allele num: 4098
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East Asian
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Other
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

ClippingRankSum
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InbreedingCoeff
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DP
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SIO_000300: 9.87586e5

ReadPosRankSum
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QD
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SIO_000300: 8.880000000000001e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.002242511613007e-5
allele num: 49944
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European (Finnish)
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allele frequency: 0.0e0
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FS
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 646
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 50090
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South Asian
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QD
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MQRankSum
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ReadPosRankSum
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FS
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DP
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 45
allele frequency: 9.033605010639579e-4
allele num: 49814
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 9.26906779661017e-4
allele num: 7552
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East Asian
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Latino
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allele frequency: 8.905852417302799e-4
allele num: 7860
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Other
type: Population
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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South Asian
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
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MQ
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 49888
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Other
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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Other
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FS
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3470
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.498800959232614e-4
allele num: 13344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7730
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 1.476e1

DP
type: SiteQuality
SIO_000300: 9.9257e5

GenotypeQuality
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1378
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3569
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.75e1
variant carriers: 22

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 4.837344297980409e-4
allele num: 49614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7724
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.919999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.064e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.419999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

FS
type: SiteQuality
SIO_000300: 5.28e-1

DP
type: SiteQuality
SIO_000300: 9.96688e5

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 961
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22945
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 3.75e1
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GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 799
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3850
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.567398119122257e-3
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.080633314290378e-5
allele num: 49012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13156
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.033e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

FS
type: SiteQuality
SIO_000300: 1.3272e1

DP
type: SiteQuality
SIO_000300: 1.001575e6

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

QD
type: SiteQuality
SIO_000300: 1.232e1

GenotypeQuality
all individuals: 23051
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 865
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variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13108
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.336183858898984e-4
allele num: 7484
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.716981132075472e-4
allele num: 6360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.134969325153375e-5
allele num: 48900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.604166666666667e-4
allele num: 3840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.003781e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.088e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

GenotypeQuality
all individuals: 987
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22815
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.147623544224111e-4
allele num: 6354
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.329e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

MQ
type: SiteQuality
SIO_000300: 5.892e1

VQSLOD
type: SiteQuality
SIO_000300: -1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 9.42e0

DP
type: SiteQuality
SIO_000300: 9.98801e5

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23474
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7474
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.664009809932556e-5
allele num: 13048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.94e-1

DP
type: SiteQuality
SIO_000300: 1.001376e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.332e1

GenotypeQuality
all individuals: 1220
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2495
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.192169028255219e-5
allele num: 47708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3704
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.87895e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQRankSum
type: SiteQuality
SIO_000300: 8.129999999999999e-1

FS
type: SiteQuality
SIO_000300: 4.702e0

VQSLOD
type: SiteQuality
SIO_000300: -3.229e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.025e0

GenotypeQuality
all individuals: 269
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 956
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GenotypeQuality
all individuals: 26
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GenotypeQuality
all individuals: 645
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
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GenotypeQuality
all individuals: 1736
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GenotypeQuality
all individuals: 1207
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variant carriers: 0

GenotypeQuality
all individuals: 2219
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variant carriers: 0

GenotypeQuality
all individuals: 22883
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.106416143573324e-5
allele num: 47474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7186
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.644e0

MQRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.84539e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.23e-1

FS
type: SiteQuality
SIO_000300: 4.628e0

QD
type: SiteQuality
SIO_000300: 1.495e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
all individuals: 548
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 21476
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GenotypeQuality
all individuals: 229
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 1069
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GenotypeQuality
all individuals: 2462
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
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variant carriers: 0

GenotypeQuality
all individuals: 1605
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12362
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.391982182628062e-4
allele num: 7184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6948
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 9.64413e5

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.02e-1

FS
type: SiteQuality
SIO_000300: 7.726e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

QD
type: SiteQuality
SIO_000300: 3.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 1121
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 27037
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variant carriers: 0

GenotypeQuality
all individuals: 525
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variant carriers: 0

GenotypeQuality
all individuals: 20838
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variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 1157
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.17732102421181e-5
allele num: 45928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

QD
type: SiteQuality
SIO_000300: 7.0e0

DP
type: SiteQuality
SIO_000300: 9.51738e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

FS
type: SiteQuality
SIO_000300: 1.175e0

VQSLOD
type: SiteQuality
SIO_000300: -1.836e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

GenotypeQuality
all individuals: 525
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45928
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.313452617627568e-4
allele num: 6036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.175e0

DP
type: SiteQuality
SIO_000300: 9.51738e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 7.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.836e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

GenotypeQuality
all individuals: 2201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11964
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.420858198351804e-4
allele num: 7038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.225882562436006e-5
allele num: 44926
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 2.313e0

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.32965e5

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.518372304889159e-4
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.854695974878676e-4
allele num: 7006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

FS
type: SiteQuality
SIO_000300: 5.225e0

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

DP
type: SiteQuality
SIO_000300: 9.33308e5

GenotypeQuality
all individuals: 30695
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 170
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variant carriers: 0

GenotypeQuality
all individuals: 424
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GenotypeQuality
all individuals: 223
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variant carriers: 0

GenotypeQuality
all individuals: 92
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variant carriers: 0

GenotypeQuality
all individuals: 1075
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variant carriers: 0

GenotypeQuality
all individuals: 1279
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.333613366937366e-5
allele num: 42852
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.754385964912281e-4
allele num: 5700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.121e0

QD
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: -7.86e-1

FS
type: SiteQuality
SIO_000300: 1.639e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 8.89349e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 368
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2481
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GenotypeQuality
all individuals: 16578
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variant carriers: 0

GenotypeQuality
all individuals: 669
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variant carriers: 0

GenotypeQuality
all individuals: 384
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GenotypeQuality
all individuals: 711
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 39
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variant carriers: 1

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.374169040835707e-5
allele num: 42120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3276
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.74682e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

FS
type: SiteQuality
SIO_000300: 5.215e0

VQSLOD
type: SiteQuality
SIO_000300: -1.475e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQ
type: SiteQuality
SIO_000300: 5.763e1

QD
type: SiteQuality
SIO_000300: 9.25e0

GenotypeQuality
all individuals: 430
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 34215
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 1022
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variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.871958068139274e-4
allele num: 5342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10460
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.05e1

DP
type: SiteQuality
SIO_000300: 8.10908e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 4.4152e1

QD
type: SiteQuality
SIO_000300: 2.143e1

MQ
type: SiteQuality
SIO_000300: 5.833e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.526e0

GenotypeQuality
all individuals: 1157
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34431
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
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variant carriers: 0

GenotypeQuality
all individuals: 183
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GenotypeQuality
all individuals: 2678
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 514
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GenotypeQuality
all individuals: 2246
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12741
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variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.540521314973833e-5
allele num: 39362
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3062
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 8.10102e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

FS
type: SiteQuality
SIO_000300: 7.957e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

GenotypeQuality
all individuals: 3441
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 8.75e1
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GenotypeQuality
all individuals: 38
bin: 9.75e1
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GenotypeQuality
all individuals: 147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.773617351750152e-5
allele num: 36054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2740
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.40722e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 8.57e-1

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
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GenotypeQuality
all individuals: 558
bin: 1.25e1
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GenotypeQuality
all individuals: 851
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36985
bin: 2.25e1
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GenotypeQuality
all individuals: 133
bin: 9.75e1
variant carriers: 96

GenotypeQuality
all individuals: 9155
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 561
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 3

Latino
type: Population
allele count: 10
allele frequency: 2.026753141467369e-3
allele num: 4934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4916
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2732
num of homozygotes: 0

African
type: Population
allele count: 92
allele frequency: 1.535893155258765e-2
allele num: 5990
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.389738173328145e-4
allele num: 35978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.291845493562232e-3
allele num: 466
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.72e-1

FS
type: SiteQuality
SIO_000300: 1.868e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.04e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

QD
type: SiteQuality
SIO_000300: 1.336e1

DP
type: SiteQuality
SIO_000300: 7.3836e5

GenotypeQuality
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.122241086587436e-4
allele num: 4712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3234
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -8.154e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

FS
type: SiteQuality
SIO_000300: 1.5097e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

DP
type: SiteQuality
SIO_000300: 5.81407e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
all individuals: 1615
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.472754050073638e-4
allele num: 6790
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 5.81407e5

FS
type: SiteQuality
SIO_000300: 1.5097e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.154e-1

GenotypeQuality
all individuals: 2489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.87086784857165e-5
allele num: 25834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 2.837e0

QD
type: SiteQuality
SIO_000300: 1.502e1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 5.73815e5

GenotypeQuality
all individuals: 34
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35422
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2824
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.52637e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.083e0

QD
type: SiteQuality
SIO_000300: 1.951e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.47e-2

GenotypeQuality
all individuals: 3008
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
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variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.028171910343409e-4
allele num: 19452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.23e-2

FS
type: SiteQuality
SIO_000300: 5.928e0

VQSLOD
type: SiteQuality
SIO_000300: 3.46e-1

DP
type: SiteQuality
SIO_000300: 5.03303e5

QD
type: SiteQuality
SIO_000300: 1.209e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 17815
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.194630872483221e-4
allele num: 2384
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 9.27e0

DP
type: SiteQuality
SIO_000300: 3.55704e5

GenotypeQuality
all individuals: 744
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.416e0

QD
type: SiteQuality
SIO_000300: 1.05e1

DP
type: SiteQuality
SIO_000300: 3.46048e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.68e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 3

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.042e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.82e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 3.12047e5

GenotypeQuality
all individuals: 322
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.042e1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 2.69e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.82e-2

DP
type: SiteQuality
SIO_000300: 3.12047e5

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6064
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.696e1

DP
type: SiteQuality
SIO_000300: 2.94154e5

VQSLOD
type: SiteQuality
SIO_000300: -1.141e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.510000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.638e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.54e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1216
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 8.91e0

DP
type: SiteQuality
SIO_000300: 2.76317e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 32091
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5118
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 2.68861e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 6.89e0

GenotypeQuality
all individuals: 211
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5363
bin: 1.25e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 672
bin: 3.25e1
variant carriers: 2

African
type: Population
allele count: 3
allele frequency: 1.818181818181818e-3
allele num: 1650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.529e0

VQSLOD
type: SiteQuality
SIO_000300: -1.325e0

DP
type: SiteQuality
SIO_000300: 2.57495e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.480000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.063e1

GenotypeQuality
all individuals: 224
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 2.57747e5

MQ
type: SiteQuality
SIO_000300: 5.596e1

GenotypeQuality
all individuals: 2670
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5769
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 2
allele frequency: 1.993620414673046e-4
allele num: 10032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15750
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64910
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e-1

DP
type: SiteQuality
SIO_000300: 1.496815e6

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.71e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

FS
type: SiteQuality
SIO_000300: 4.377e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 1706
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6909
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variant carriers: 0

GenotypeQuality
all individuals: 2872
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64984
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17343346632246e-4
allele num: 8522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

QD
type: SiteQuality
SIO_000300: 1.512e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.844e1

DP
type: SiteQuality
SIO_000300: 1.504267e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4231
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variant carriers: 0

GenotypeQuality
all individuals: 5809
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536239899222663e-5
allele num: 65094
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.079e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

QD
type: SiteQuality
SIO_000300: 1.491e1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

FS
type: SiteQuality
SIO_000300: 1.284e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.541026e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 1434
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GenotypeQuality
all individuals: 7412
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535390756947643e-5
allele num: 65130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.127e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.703e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.545538e6

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5816
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7412
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variant carriers: 0

GenotypeQuality
all individuals: 465
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GenotypeQuality
all individuals: 4281
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GenotypeQuality
all individuals: 3103
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.313928526329082e-5
allele num: 15838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.609999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.545538e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.127e-1

MQ
type: SiteQuality
SIO_000300: 5.863e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.703e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 638
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7511
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GenotypeQuality
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GenotypeQuality
all individuals: 1434
bin: 3.75e1
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GenotypeQuality
all individuals: 72
bin: 7.5e0
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GenotypeQuality
all individuals: 536
bin: 4.25e1
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GenotypeQuality
all individuals: 1945
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.988071570576541e-4
allele num: 10060
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65188
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.197e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

QD
type: SiteQuality
SIO_000300: 2.892e1

DP
type: SiteQuality
SIO_000300: 1.555032e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508159140952553e-5
allele num: 66306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.185e0

DP
type: SiteQuality
SIO_000300: 1.644501e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.135e1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.965e0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.016045361322234e-5
allele num: 66312
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.645741e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.413e0

FS
type: SiteQuality
SIO_000300: 1.803e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.386e1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQ
type: SiteQuality
SIO_000300: 5.893e1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.81e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.649773e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.667e0

FS
type: SiteQuality
SIO_000300: 3.642e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.383e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.56e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.578e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.825e0

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
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DP
type: SiteQuality
SIO_000300: 1.651451e6